Wall clock time and date at job start Sat Apr 11 2020 00:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47057 * 2 1 4 4 C 1.36451 * 127.13805 * 83.77049 * 3 2 1 5 5 N 1.38575 * 126.47581 * 0.02562 * 4 3 2 6 6 C 1.44271 * 111.00064 * 77.19511 * 5 4 3 7 7 C 1.54072 * 111.98184 * 219.31328 * 6 5 4 8 8 C 1.54291 * 112.28917 * 318.91331 * 7 6 5 9 9 C 1.50461 * 113.03333 * 318.30826 * 8 7 6 10 10 C 1.54500 * 108.85620 * 92.15243 * 9 8 7 11 11 H 1.08994 * 109.05757 * 43.35002 * 10 9 8 12 12 C 1.53003 * 109.00139 * 162.30155 * 10 9 8 13 13 C 1.45869 * 111.59149 * 282.80479 * 10 9 8 14 14 N 1.31225 * 107.05138 * 180.02562 * 4 3 2 15 15 N 1.28523 * 109.85936 * 359.72982 * 14 4 3 16 16 C 1.30297 * 110.05817 * 0.45276 * 15 14 4 17 17 C 1.50699 * 126.35038 * 179.82041 * 16 15 14 18 18 C 1.52996 * 109.47024 * 114.83021 * 17 16 15 19 19 C 1.52996 * 109.46973 * 234.83092 * 17 16 15 20 20 C 1.50698 * 109.46989 * 354.82928 * 17 16 15 21 21 H 1.08000 * 120.00380 * 358.59330 * 20 17 16 22 22 C 1.37878 * 119.99945 * 178.59017 * 20 17 16 23 23 N 1.31518 * 120.00085 * 192.46632 * 22 20 17 24 24 Si 1.86800 * 119.99770 * 12.46713 * 22 20 17 25 25 H 1.48502 * 109.47034 * 95.69916 * 24 22 20 26 26 H 1.48506 * 109.47017 * 215.69362 * 24 22 20 27 27 H 1.48497 * 109.47436 * 335.69512 * 24 22 20 28 28 H 1.09004 * 109.46780 * 179.60779 * 1 2 3 29 29 H 1.09000 * 109.47508 * 299.60724 * 1 2 3 30 30 H 1.09003 * 109.47210 * 59.61703 * 1 2 3 31 31 H 1.08997 * 109.47405 * 239.99973 * 2 1 3 32 32 H 1.08998 * 109.47039 * 119.99615 * 2 1 3 33 33 H 1.09000 * 108.98198 * 339.95440 * 6 5 4 34 34 H 1.08997 * 108.98088 * 98.67070 * 6 5 4 35 35 H 1.09006 * 108.91510 * 198.19810 * 7 6 5 36 36 H 1.08994 * 108.84633 * 79.59252 * 7 6 5 37 37 H 1.08994 * 108.77306 * 197.39018 * 8 7 6 38 38 H 1.09004 * 108.76816 * 79.21936 * 8 7 6 39 39 H 1.08997 * 109.57545 * 332.33656 * 9 8 7 40 40 H 1.09007 * 109.68028 * 212.02705 * 9 8 7 41 41 H 1.09003 * 109.46968 * 182.05149 * 12 10 9 42 42 H 1.08999 * 109.46726 * 302.04999 * 12 10 9 43 43 H 1.08996 * 109.47197 * 62.05286 * 12 10 9 44 44 H 1.08993 * 108.79386 * 300.44118 * 13 10 9 45 45 H 1.09002 * 108.79594 * 182.21346 * 13 10 9 46 46 H 1.09004 * 109.46944 * 188.66791 * 18 17 16 47 47 H 1.08999 * 109.47496 * 308.66607 * 18 17 16 48 48 H 1.08999 * 109.47311 * 68.67076 * 18 17 16 49 49 H 1.09002 * 109.47418 * 287.86562 * 19 17 16 50 50 H 1.09002 * 109.47333 * 47.86304 * 19 17 16 51 51 H 1.09004 * 109.47348 * 167.86533 * 19 17 16 52 52 H 0.96995 * 119.99966 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1816 2.1973 1.0813 5 7 1.9158 1.8766 2.4030 6 6 2.9610 1.0491 2.9546 7 6 2.3996 -0.0533 3.8729 8 6 1.2565 0.4606 4.7729 9 6 1.5266 1.8253 5.3459 10 6 0.9292 2.8911 4.4002 11 1 -0.0606 2.5671 4.0789 12 6 0.7998 4.2137 5.1585 13 6 1.7680 3.0963 3.2246 14 7 2.6380 3.3431 0.6333 15 7 2.7728 3.2901 -0.6438 16 6 2.4044 2.1203 -1.0838 17 6 2.4091 1.6641 -2.5201 18 6 3.4214 0.5298 -2.6916 19 6 1.0141 1.1648 -2.9012 20 6 2.7909 2.8173 -3.4121 21 1 2.9862 3.7894 -2.9841 22 6 2.8909 2.6312 -4.7746 23 7 3.4547 3.5528 -5.5245 24 14 2.2256 1.0700 -5.5553 25 1 0.8517 1.3167 -6.0621 26 1 3.1041 0.6671 -6.6828 27 1 2.1920 -0.0149 -4.5418 28 1 -0.3633 -1.0277 -0.0070 29 1 -0.3634 0.5077 0.8935 30 1 -0.3634 0.5198 -0.8865 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5125 0.5833 2.1380 34 1 3.6432 1.6757 3.5291 35 1 3.2040 -0.4308 4.5043 36 1 2.0236 -0.8686 3.2550 37 1 1.1132 -0.2423 5.5935 38 1 0.3393 0.5021 4.1854 39 1 2.6022 1.9778 5.4348 40 1 1.0635 1.9089 6.3291 41 1 0.3451 4.9618 4.5091 42 1 0.1739 4.0679 6.0388 43 1 1.7883 4.5534 5.4676 44 1 2.7558 3.4219 3.5505 45 1 1.3267 3.8817 2.6110 46 1 3.5380 0.3041 -3.7516 47 1 4.3823 0.8345 -2.2772 48 1 3.0649 -0.3575 -2.1683 49 1 0.8245 0.2086 -2.4133 50 1 0.2677 1.8911 -2.5793 51 1 0.9559 1.0389 -3.9823 52 1 3.5254 3.4217 -6.4830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263035006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:31 Heat of formation + Delta-G solvation = 100.414390 kcal Electronic energy + Delta-G solvation = -29607.388475 eV Core-core repulsion = 26030.211506 eV Total energy + Delta-G solvation = -3577.176969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45522 -39.56954 -36.42782 -35.43935 -34.48400 -33.60927 -31.66412 -30.25962 -28.97397 -27.82853 -26.54607 -25.88946 -25.00340 -24.48717 -23.63334 -22.25481 -21.16786 -20.14113 -19.67747 -19.18826 -17.08025 -16.33654 -16.01386 -15.71646 -15.45726 -15.10985 -14.98298 -14.66640 -14.31330 -14.10126 -13.57318 -13.38577 -13.04548 -12.89858 -12.83039 -12.60611 -12.45556 -12.36895 -12.26604 -12.15806 -11.91128 -11.71577 -11.47109 -11.28820 -11.03372 -11.01235 -10.76385 -10.65751 -10.57435 -10.50806 -10.31814 -10.27623 -10.15402 -9.99125 -9.57998 -9.29233 -8.90750 -8.78723 -8.48013 -7.84064 -6.07428 -4.04795 2.37036 2.67464 3.22225 3.27497 3.37123 3.60429 3.83784 4.36339 4.47749 4.60856 4.71757 4.81191 4.86326 4.99302 5.03545 5.08951 5.14281 5.18474 5.20953 5.25539 5.37224 5.46909 5.52290 5.54650 5.56546 5.66175 5.67458 5.71430 5.80206 5.85019 5.90747 5.92842 5.97673 6.06892 6.08668 6.13749 6.15157 6.17550 6.22987 6.28633 6.30144 6.32082 6.51256 6.57110 6.69285 6.86609 6.92881 7.19071 7.21711 7.63139 7.72611 8.52387 9.13679 9.52449 9.57724 11.05365 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.003815 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.185339 B = 7337.526944 C = 7896.618645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.477 5.477 4 C 0.319 3.681 5 N -0.443 5.443 6 C 0.057 3.943 7 C -0.107 4.107 8 C -0.110 4.110 9 C -0.112 4.112 10 C -0.089 4.089 11 H 0.076 0.924 12 C -0.146 4.146 13 C 0.077 3.923 14 N -0.326 5.326 15 N -0.271 5.271 16 C 0.240 3.760 17 C 0.123 3.877 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.501 4.501 21 H 0.097 0.903 22 C 0.075 3.925 23 N -0.887 5.887 24 Si 0.865 3.135 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.244 1.244 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.026 0.974 49 H 0.036 0.964 50 H 0.051 0.949 51 H 0.052 0.948 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -10.471 20.531 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.172 5.172 4 C -0.037 4.037 5 N -0.166 5.166 6 C -0.072 4.072 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.149 4.149 10 C -0.108 4.108 11 H 0.094 0.906 12 C -0.204 4.204 13 C -0.050 4.050 14 N -0.170 5.170 15 N -0.108 5.108 16 C -0.027 4.027 17 C 0.119 3.881 18 C -0.201 4.201 19 C -0.203 4.203 20 C -0.539 4.539 21 H 0.115 0.885 22 C -0.127 4.127 23 N -0.524 5.524 24 Si 0.695 3.305 25 H -0.212 1.212 26 H -0.227 1.227 27 H -0.169 1.169 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.045 0.955 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.071 0.929 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.725 -9.241 20.375 23.094 hybrid contribution -0.204 -1.784 -0.618 1.899 sum -5.929 -11.025 19.757 23.389 Atomic orbital electron populations 1.22218 0.94164 1.02680 1.03764 1.21863 0.95923 0.79855 1.04018 1.46334 1.50962 1.13414 1.06491 1.22288 1.04102 0.89685 0.87592 1.58098 1.43436 1.18786 0.96257 1.22045 0.91622 0.95569 0.97965 1.21953 0.98309 0.97097 0.97204 1.21193 0.99136 0.96223 0.98262 1.21437 1.00945 0.94482 0.98084 1.20208 1.00184 0.95840 0.94520 0.90559 1.21837 1.01893 0.96580 1.00061 1.20943 1.00386 0.89786 0.93882 1.74624 1.18503 1.18513 1.05397 1.74152 1.18861 1.16840 1.00975 1.25380 0.98024 0.87924 0.91398 1.17111 0.92440 0.95730 0.82799 1.22456 0.99663 0.96045 1.01963 1.22502 0.98545 0.98661 1.00575 1.20783 1.46601 0.96255 0.90275 0.88465 1.24950 0.94565 0.96087 0.97071 1.69932 1.41810 1.34921 1.05717 0.87640 0.78601 0.85590 0.78624 1.21249 1.22669 1.16903 0.91075 0.91536 0.91169 0.88400 0.89819 0.91914 0.92766 0.91795 0.92015 0.92805 0.91484 0.92059 0.91905 0.92392 0.92412 0.92596 0.93190 0.89806 0.91452 0.93014 0.95516 0.94477 0.92943 0.92949 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.79 37.16 0.36 -1.67 16 2 C 0.11 1.43 5.96 -4.04 -0.02 1.41 16 3 N -0.48 -8.48 2.81 -114.08 -0.32 -8.80 16 4 C 0.32 5.70 6.48 -318.88 -2.06 3.64 16 5 N -0.44 -6.00 4.24 -179.19 -0.76 -6.76 16 6 C 0.06 0.65 4.72 -4.67 -0.02 0.63 16 7 C -0.11 -0.93 6.15 -25.50 -0.16 -1.09 16 8 C -0.11 -0.90 5.42 -27.32 -0.15 -1.05 16 9 C -0.11 -0.91 4.95 -27.21 -0.13 -1.05 16 10 C -0.09 -0.85 2.46 -93.21 -0.23 -1.08 16 11 H 0.08 0.78 7.59 -51.93 -0.39 0.38 16 12 C -0.15 -1.22 9.02 37.16 0.34 -0.89 16 13 C 0.08 0.97 3.75 -6.71 -0.03 0.94 16 14 N -0.33 -7.10 11.15 30.31 0.34 -6.76 16 15 N -0.27 -6.70 11.00 32.99 0.36 -6.34 16 16 C 0.24 5.30 6.29 -154.01 -0.97 4.33 16 17 C 0.12 2.79 0.47 -156.82 -0.07 2.72 16 18 C -0.14 -2.96 7.57 37.16 0.28 -2.68 16 19 C -0.15 -2.95 6.41 37.16 0.24 -2.71 16 20 C -0.50 -13.98 8.52 -34.44 -0.29 -14.27 16 21 H 0.10 3.09 7.20 -52.49 -0.38 2.72 16 22 C 0.08 2.12 5.35 -17.82 -0.10 2.02 16 23 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 24 Si 0.86 20.35 22.77 -169.99 -3.87 16.48 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.24 -5.07 4.36 56.52 0.25 -4.82 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.96 6.08 -51.93 -0.32 0.64 16 31 H 0.10 1.32 4.40 -51.93 -0.23 1.09 16 32 H 0.08 0.94 7.46 -51.93 -0.39 0.56 16 33 H 0.06 0.81 7.31 -51.93 -0.38 0.43 16 34 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.62 7.38 -51.93 -0.38 0.23 16 39 H 0.06 0.52 7.15 -51.93 -0.37 0.15 16 40 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.64 7.24 -51.93 -0.38 0.27 16 45 H 0.08 1.25 7.35 -51.93 -0.38 0.87 16 46 H 0.07 1.43 3.93 -51.93 -0.20 1.23 16 47 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 48 H 0.03 0.45 5.70 -51.93 -0.30 0.15 16 49 H 0.04 0.62 4.86 -51.93 -0.25 0.37 16 50 H 0.05 1.07 7.92 -51.93 -0.41 0.66 16 51 H 0.05 1.12 2.68 -51.93 -0.14 0.98 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -32.06 368.08 -9.69 -41.75 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.74 Total: 1.80 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -3.02 Total: -10.79 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.39 Total: -54.78 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -3.87 Total: 16.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.06 -9.69 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263035006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.168 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds