Wall clock time and date at job start Sat Apr 11 2020 00:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47416 * 2 1 4 4 C 1.36448 * 127.14279 * 272.56523 * 3 2 1 5 5 N 1.38587 * 126.47053 * 359.97438 * 4 3 2 6 6 C 1.47632 * 110.99872 * 60.12930 * 5 4 3 7 7 C 1.50817 * 108.08522 * 150.32251 * 6 5 4 8 8 C 1.53861 * 111.59352 * 95.00202 * 7 6 5 9 9 C 1.54177 * 112.00724 * 319.11163 * 8 7 6 10 10 C 1.50749 * 112.60489 * 318.45869 * 9 8 7 11 11 H 1.08997 * 109.54964 * 333.15283 * 10 9 8 12 12 C 1.53000 * 109.61775 * 212.92307 * 10 9 8 13 13 C 1.39772 * 110.99705 * 291.23402 * 5 4 3 14 14 N 1.31219 * 107.05895 * 180.23541 * 4 3 2 15 15 N 1.28529 * 109.85828 * 359.56467 * 14 4 3 16 16 C 1.30302 * 110.04987 * 0.44836 * 15 14 4 17 17 C 1.50704 * 126.34191 * 179.69629 * 16 15 14 18 18 C 1.52999 * 109.46917 * 125.89268 * 17 16 15 19 19 C 1.53002 * 109.46903 * 245.89166 * 17 16 15 20 20 C 1.50696 * 109.47478 * 5.89356 * 17 16 15 21 21 H 1.08003 * 119.99858 * 359.97438 * 20 17 16 22 22 C 1.37877 * 120.00240 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99458 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 120.00132 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47344 * 59.99910 * 24 22 20 26 26 H 1.48500 * 109.47110 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46975 * 299.99718 * 24 22 20 28 28 H 1.09000 * 109.47197 * 185.90346 * 1 2 3 29 29 H 1.09002 * 109.46811 * 305.89692 * 1 2 3 30 30 H 1.08995 * 109.47223 * 65.89782 * 1 2 3 31 31 H 1.09001 * 109.47093 * 240.00312 * 2 1 3 32 32 H 1.09000 * 109.47602 * 120.00758 * 2 1 3 33 33 H 1.09003 * 109.74665 * 269.98664 * 6 5 4 34 34 H 1.09003 * 109.74578 * 30.65886 * 6 5 4 35 35 H 1.08995 * 109.04794 * 215.63100 * 7 6 5 36 36 H 1.08998 * 109.04843 * 334.53148 * 7 6 5 37 37 H 1.09003 * 108.98452 * 198.44502 * 8 7 6 38 38 H 1.08995 * 108.94590 * 79.75145 * 8 7 6 39 39 H 1.08995 * 108.85472 * 197.65085 * 9 8 7 40 40 H 1.08999 * 108.76977 * 79.20502 * 9 8 7 41 41 H 1.08993 * 109.47385 * 300.41348 * 12 10 9 42 42 H 1.09006 * 109.47243 * 60.41451 * 12 10 9 43 43 H 1.09005 * 109.46983 * 180.41365 * 12 10 9 44 44 H 1.09005 * 109.02400 * 309.72083 * 13 5 4 45 45 H 1.08999 * 109.02415 * 68.61380 * 13 5 4 46 46 H 1.09004 * 109.47244 * 67.86674 * 18 17 16 47 47 H 1.09002 * 109.46659 * 187.85821 * 18 17 16 48 48 H 1.08996 * 109.47210 * 307.86249 * 18 17 16 49 49 H 1.09000 * 109.46936 * 66.27056 * 19 17 16 50 50 H 1.08997 * 109.47237 * 186.27087 * 19 17 16 51 51 H 1.09001 * 109.46782 * 306.27083 * 19 17 16 52 52 H 0.97005 * 119.99563 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2472 2.1741 -1.0866 5 7 2.0612 1.8252 -2.4148 6 6 0.6531 1.4658 -2.6753 7 6 0.3399 1.8093 -4.1100 8 6 0.5131 0.5917 -5.0345 9 6 1.7629 -0.2354 -4.6727 10 6 2.9532 0.6282 -4.3413 11 1 2.8646 1.5847 -4.8564 12 6 4.2376 -0.0750 -4.7850 13 6 2.9943 0.8649 -2.8158 14 7 2.6819 3.3276 -0.6367 15 7 2.7288 3.3057 0.6476 16 6 2.3391 2.1433 1.0891 17 6 2.2577 1.7177 2.5325 18 6 0.8490 1.2018 2.8333 19 6 3.2749 0.6052 2.7942 20 6 2.5617 2.8958 3.4216 21 1 2.7914 3.8566 2.9851 22 6 2.5477 2.7469 4.7922 23 7 2.2686 1.5767 5.3236 24 14 2.9253 4.2070 5.8943 25 1 1.9381 5.2870 5.6407 26 1 2.8450 3.7876 7.3165 27 1 4.2926 4.7075 5.6017 28 1 -0.3633 -1.0222 0.1057 29 1 -0.3633 0.6026 0.8325 30 1 -0.3633 0.4196 -0.9380 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.5095 0.3976 -2.5125 34 1 -0.0002 2.0307 -2.0102 35 1 -0.6889 2.1634 -4.1746 36 1 1.0096 2.6035 -4.4400 37 1 0.6031 0.9382 -6.0641 38 1 -0.3686 -0.0437 -4.9518 39 1 2.0171 -0.8770 -5.5163 40 1 1.5315 -0.8619 -3.8113 41 1 4.3234 -1.0327 -4.2716 42 1 4.2073 -0.2414 -5.8618 43 1 5.0971 0.5481 -4.5376 44 1 3.9926 1.2007 -2.5351 45 1 2.7793 -0.0741 -2.3058 46 1 0.6806 0.2696 2.2942 47 1 0.7478 1.0256 3.9042 48 1 0.1153 1.9428 2.5160 49 1 4.2841 1.0033 2.6878 50 1 3.1408 0.2207 3.8052 51 1 3.1247 -0.2008 2.0760 52 1 2.2591 1.4719 6.2879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263035007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:34 Heat of formation + Delta-G solvation = 84.463611 kcal Electronic energy + Delta-G solvation = -29724.455182 eV Core-core repulsion = 26146.586535 eV Total energy + Delta-G solvation = -3577.868647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43033 -39.71813 -36.09184 -35.55633 -34.20150 -33.57021 -31.21804 -30.28275 -28.71014 -27.98673 -26.00362 -25.73834 -25.13117 -24.53105 -23.68366 -21.82966 -20.98210 -20.55080 -19.53517 -19.00076 -17.27558 -16.13638 -16.08027 -15.61329 -15.28074 -15.01442 -14.88666 -14.70659 -14.32772 -14.11554 -13.51993 -13.22076 -13.03985 -12.93537 -12.78883 -12.67411 -12.20240 -12.11683 -11.92319 -11.59700 -11.54126 -11.38531 -11.26095 -11.17306 -10.97087 -10.76919 -10.76403 -10.64408 -10.56189 -10.55244 -10.33759 -10.15625 -10.03308 -9.96176 -9.58925 -9.49117 -8.86691 -8.48779 -8.38272 -8.07439 -6.02240 -4.07620 2.46156 2.93403 3.38179 3.39969 3.47330 3.60529 3.75631 4.45483 4.45960 4.49302 4.61982 4.70979 4.82846 4.90671 5.04454 5.06882 5.17920 5.23777 5.27534 5.31230 5.34151 5.39576 5.44026 5.49929 5.57357 5.65651 5.66915 5.68977 5.75601 5.84028 5.89172 5.97597 6.00201 6.05906 6.14289 6.20506 6.25650 6.43875 6.56391 6.57761 6.63975 6.67018 6.72757 7.07679 7.11502 7.26012 7.34650 7.61949 7.81875 7.85113 8.10245 8.32706 8.99571 9.55782 9.71251 11.01363 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.003615 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.534958 B = 7743.253613 C = 7920.027838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 N -0.501 5.501 4 C 0.303 3.697 5 N -0.449 5.449 6 C 0.065 3.935 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.087 4.087 11 H 0.086 0.914 12 C -0.144 4.144 13 C 0.076 3.924 14 N -0.275 5.275 15 N -0.292 5.292 16 C 0.245 3.755 17 C 0.145 3.855 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.491 4.491 21 H 0.077 0.923 22 C 0.062 3.938 23 N -0.896 5.896 24 Si 0.900 3.100 25 H -0.276 1.276 26 H -0.289 1.289 27 H -0.276 1.276 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.019 0.981 47 H 0.099 0.901 48 H 0.026 0.974 49 H 0.035 0.965 50 H 0.094 0.906 51 H 0.006 0.994 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -9.320 -18.018 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.027 4.027 3 N -0.199 5.199 4 C -0.051 4.051 5 N -0.172 5.172 6 C -0.061 4.061 7 C -0.158 4.158 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.106 4.106 11 H 0.105 0.895 12 C -0.201 4.201 13 C -0.053 4.053 14 N -0.117 5.117 15 N -0.130 5.130 16 C -0.022 4.022 17 C 0.142 3.858 18 C -0.196 4.196 19 C -0.186 4.186 20 C -0.530 4.530 21 H 0.095 0.905 22 C -0.138 4.138 23 N -0.535 5.535 24 Si 0.728 3.272 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.201 1.201 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.118 0.882 48 H 0.045 0.955 49 H 0.054 0.946 50 H 0.113 0.887 51 H 0.025 0.975 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.249 -7.586 -18.156 19.944 hybrid contribution -0.447 -1.355 0.943 1.710 sum -3.696 -8.941 -17.213 19.746 Atomic orbital electron populations 1.22570 0.94356 1.03430 1.04043 1.22002 0.95789 0.80567 1.04299 1.47381 1.51196 1.13281 1.08043 1.22608 1.07351 0.90508 0.84646 1.55709 1.05269 1.45328 1.10873 1.22177 0.86598 0.99501 0.97841 1.21431 1.01945 0.98746 0.93652 1.21930 0.97371 0.96758 0.99385 1.21527 0.94560 0.98093 1.01368 1.21004 0.94854 1.00214 0.94510 0.89534 1.21824 0.96958 1.00429 1.00938 1.21212 0.95999 0.92465 0.95610 1.74447 1.17001 1.15924 1.04319 1.74276 1.20255 1.17778 1.00703 1.26105 0.96053 0.87546 0.92460 1.16914 0.93649 0.95621 0.79651 1.22093 0.96149 0.96326 1.05078 1.21908 0.98361 0.95900 1.02461 1.21057 1.46330 0.95618 0.90000 0.90508 1.24864 0.94976 0.96071 0.97859 1.69776 1.49759 1.22544 1.11462 0.86500 0.79228 0.82635 0.78787 1.20196 1.21504 1.20121 0.90823 0.90069 0.91834 0.90361 0.87677 0.92864 0.90419 0.91486 0.90010 0.91984 0.92345 0.91864 0.92597 0.92809 0.92337 0.92315 0.90407 0.95672 0.96250 0.88238 0.95466 0.94566 0.88697 0.97535 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 9.24 37.16 0.34 -1.99 16 2 C 0.10 1.39 5.04 -4.04 -0.02 1.37 16 3 N -0.50 -9.31 2.81 -114.08 -0.32 -9.63 16 4 C 0.30 5.72 6.26 -318.87 -2.00 3.72 16 5 N -0.45 -6.56 3.98 -179.61 -0.71 -7.27 16 6 C 0.07 0.78 3.37 -4.52 -0.02 0.76 16 7 C -0.12 -1.16 5.41 -27.38 -0.15 -1.31 16 8 C -0.12 -0.92 5.91 -25.67 -0.15 -1.07 16 9 C -0.12 -0.96 4.88 -27.24 -0.13 -1.09 16 10 C -0.09 -0.83 2.44 -91.00 -0.22 -1.05 16 11 H 0.09 0.89 7.11 -51.93 -0.37 0.52 16 12 C -0.14 -1.18 8.90 37.16 0.33 -0.85 16 13 C 0.08 0.96 4.16 -6.75 -0.03 0.93 16 14 N -0.28 -6.34 12.23 30.32 0.37 -5.97 16 15 N -0.29 -7.35 11.00 32.99 0.36 -6.99 16 16 C 0.25 5.62 6.33 -154.01 -0.97 4.65 16 17 C 0.14 3.44 0.48 -156.81 -0.07 3.37 16 18 C -0.14 -3.05 6.98 37.16 0.26 -2.79 16 19 C -0.13 -2.90 8.06 37.16 0.30 -2.60 16 20 C -0.49 -13.31 7.91 -34.44 -0.27 -13.58 16 21 H 0.08 2.21 6.95 -52.48 -0.36 1.85 16 22 C 0.06 1.66 5.12 -17.82 -0.09 1.56 16 23 N -0.90 -23.55 9.40 55.43 0.52 -23.03 16 24 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.21 5.70 -51.93 -0.30 0.92 16 30 H 0.06 0.74 4.51 -51.93 -0.23 0.50 16 31 H 0.08 0.96 5.42 -51.93 -0.28 0.68 16 32 H 0.11 1.59 4.67 -51.93 -0.24 1.34 16 33 H 0.05 0.57 4.76 -51.93 -0.25 0.33 16 34 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.89 7.27 -51.93 -0.38 0.52 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 40 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.12 7.84 -51.93 -0.41 0.71 16 45 H 0.03 0.31 5.06 -51.93 -0.26 0.05 16 46 H 0.02 0.35 4.52 -51.93 -0.23 0.12 16 47 H 0.10 2.42 5.90 -51.93 -0.31 2.11 16 48 H 0.03 0.60 7.92 -51.93 -0.41 0.19 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 2.29 6.26 -51.93 -0.33 1.97 16 51 H 0.01 0.12 5.70 -51.93 -0.30 -0.18 16 52 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -29.47 365.19 -10.48 -39.95 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.28 Total: 1.05 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.90 Total: -9.97 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.22 Total: -52.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.47 -10.48 -39.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263035007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.409 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds