Wall clock time and date at job start Sat Apr 11 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47416 * 2 1 4 4 C 1.36448 * 127.14279 * 272.56523 * 3 2 1 5 5 N 1.38587 * 126.47053 * 359.97438 * 4 3 2 6 6 C 1.47632 * 110.99872 * 60.12930 * 5 4 3 7 7 C 1.50817 * 108.08522 * 150.32251 * 6 5 4 8 8 C 1.53861 * 111.59352 * 95.00202 * 7 6 5 9 9 C 1.54177 * 112.00724 * 319.11163 * 8 7 6 10 10 C 1.50749 * 112.60489 * 318.45869 * 9 8 7 11 11 H 1.08997 * 109.54964 * 333.15283 * 10 9 8 12 12 C 1.53000 * 109.61775 * 212.92307 * 10 9 8 13 13 C 1.39772 * 110.99705 * 291.23402 * 5 4 3 14 14 N 1.31219 * 107.05895 * 180.23541 * 4 3 2 15 15 N 1.28529 * 109.85828 * 359.56467 * 14 4 3 16 16 C 1.30302 * 110.04987 * 0.44836 * 15 14 4 17 17 C 1.50704 * 126.34191 * 179.69629 * 16 15 14 18 18 C 1.52999 * 109.46917 * 125.89268 * 17 16 15 19 19 C 1.53002 * 109.46903 * 245.89166 * 17 16 15 20 20 C 1.50696 * 109.47478 * 5.89356 * 17 16 15 21 21 H 1.08003 * 119.99858 * 359.97438 * 20 17 16 22 22 C 1.37877 * 120.00240 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99458 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 120.00132 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47344 * 59.99910 * 24 22 20 26 26 H 1.48500 * 109.47110 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46975 * 299.99718 * 24 22 20 28 28 H 1.09000 * 109.47197 * 185.90346 * 1 2 3 29 29 H 1.09002 * 109.46811 * 305.89692 * 1 2 3 30 30 H 1.08995 * 109.47223 * 65.89782 * 1 2 3 31 31 H 1.09001 * 109.47093 * 240.00312 * 2 1 3 32 32 H 1.09000 * 109.47602 * 120.00758 * 2 1 3 33 33 H 1.09003 * 109.74665 * 269.98664 * 6 5 4 34 34 H 1.09003 * 109.74578 * 30.65886 * 6 5 4 35 35 H 1.08995 * 109.04794 * 215.63100 * 7 6 5 36 36 H 1.08998 * 109.04843 * 334.53148 * 7 6 5 37 37 H 1.09003 * 108.98452 * 198.44502 * 8 7 6 38 38 H 1.08995 * 108.94590 * 79.75145 * 8 7 6 39 39 H 1.08995 * 108.85472 * 197.65085 * 9 8 7 40 40 H 1.08999 * 108.76977 * 79.20502 * 9 8 7 41 41 H 1.08993 * 109.47385 * 300.41348 * 12 10 9 42 42 H 1.09006 * 109.47243 * 60.41451 * 12 10 9 43 43 H 1.09005 * 109.46983 * 180.41365 * 12 10 9 44 44 H 1.09005 * 109.02400 * 309.72083 * 13 5 4 45 45 H 1.08999 * 109.02415 * 68.61380 * 13 5 4 46 46 H 1.09004 * 109.47244 * 67.86674 * 18 17 16 47 47 H 1.09002 * 109.46659 * 187.85821 * 18 17 16 48 48 H 1.08996 * 109.47210 * 307.86249 * 18 17 16 49 49 H 1.09000 * 109.46936 * 66.27056 * 19 17 16 50 50 H 1.08997 * 109.47237 * 186.27087 * 19 17 16 51 51 H 1.09001 * 109.46782 * 306.27083 * 19 17 16 52 52 H 0.97005 * 119.99563 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2472 2.1741 -1.0866 5 7 2.0612 1.8252 -2.4148 6 6 0.6531 1.4658 -2.6753 7 6 0.3399 1.8093 -4.1100 8 6 0.5131 0.5917 -5.0345 9 6 1.7629 -0.2354 -4.6727 10 6 2.9532 0.6282 -4.3413 11 1 2.8646 1.5847 -4.8564 12 6 4.2376 -0.0750 -4.7850 13 6 2.9943 0.8649 -2.8158 14 7 2.6819 3.3276 -0.6367 15 7 2.7288 3.3057 0.6476 16 6 2.3391 2.1433 1.0891 17 6 2.2577 1.7177 2.5325 18 6 0.8490 1.2018 2.8333 19 6 3.2749 0.6052 2.7942 20 6 2.5617 2.8958 3.4216 21 1 2.7914 3.8566 2.9851 22 6 2.5477 2.7469 4.7922 23 7 2.2686 1.5767 5.3236 24 14 2.9253 4.2070 5.8943 25 1 1.9381 5.2870 5.6407 26 1 2.8450 3.7876 7.3165 27 1 4.2926 4.7075 5.6017 28 1 -0.3633 -1.0222 0.1057 29 1 -0.3633 0.6026 0.8325 30 1 -0.3633 0.4196 -0.9380 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.5095 0.3976 -2.5125 34 1 -0.0002 2.0307 -2.0102 35 1 -0.6889 2.1634 -4.1746 36 1 1.0096 2.6035 -4.4400 37 1 0.6031 0.9382 -6.0641 38 1 -0.3686 -0.0437 -4.9518 39 1 2.0171 -0.8770 -5.5163 40 1 1.5315 -0.8619 -3.8113 41 1 4.3234 -1.0327 -4.2716 42 1 4.2073 -0.2414 -5.8618 43 1 5.0971 0.5481 -4.5376 44 1 3.9926 1.2007 -2.5351 45 1 2.7793 -0.0741 -2.3058 46 1 0.6806 0.2696 2.2942 47 1 0.7478 1.0256 3.9042 48 1 0.1153 1.9428 2.5160 49 1 4.2841 1.0033 2.6878 50 1 3.1408 0.2207 3.8052 51 1 3.1247 -0.2008 2.0760 52 1 2.2591 1.4719 6.2879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263035007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:33 Heat of formation + Delta-G solvation = 70.084765 kcal Electronic energy + Delta-G solvation = -29725.078696 eV Core-core repulsion = 26146.586535 eV Total energy + Delta-G solvation = -3578.492160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99465 -40.75910 -37.82623 -36.73356 -35.51806 -34.37046 -33.14116 -31.58460 -30.19947 -28.85340 -27.79252 -27.26617 -26.58591 -25.49475 -24.89374 -23.42541 -22.06631 -21.88201 -20.77528 -20.16320 -18.58703 -17.91820 -17.33696 -17.01081 -16.86269 -16.25137 -16.03288 -15.85617 -15.45762 -15.12643 -15.01648 -14.59016 -14.23094 -14.07608 -13.86720 -13.67616 -13.51312 -13.35874 -13.21046 -13.09977 -12.87287 -12.64031 -12.61817 -12.37999 -12.29468 -12.20185 -12.12086 -12.07880 -11.95567 -11.83208 -11.78371 -11.45036 -11.37981 -11.29192 -11.06826 -10.98321 -10.68746 -10.40917 -9.83744 -9.66333 -8.05471 -6.16049 0.92373 1.44005 1.44821 1.48033 1.56223 2.04484 2.41692 2.48618 3.20422 3.47159 3.59582 3.74704 3.81809 3.86184 3.96739 4.02563 4.05708 4.16494 4.22192 4.30488 4.41707 4.48476 4.53745 4.57853 4.60113 4.64915 4.73608 4.76554 4.77185 4.85912 4.86076 4.94413 4.97125 5.02814 5.08842 5.13432 5.15545 5.20665 5.23143 5.28547 5.33599 5.40666 5.46743 5.47980 5.54271 5.63347 5.76029 5.95589 6.04513 6.08834 6.33842 6.46495 6.86951 7.49630 8.03725 8.95447 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.003615 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.534958 B = 7743.253613 C = 7920.027838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 N -0.492 5.492 4 C 0.331 3.669 5 N -0.453 5.453 6 C 0.066 3.934 7 C -0.116 4.116 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.077 4.077 11 H 0.077 0.923 12 C -0.141 4.141 13 C 0.074 3.926 14 N -0.326 5.326 15 N -0.338 5.338 16 C 0.229 3.771 17 C 0.141 3.859 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.516 4.516 21 H 0.048 0.952 22 C 0.033 3.967 23 N -0.900 5.900 24 Si 0.945 3.055 25 H -0.281 1.281 26 H -0.276 1.276 27 H -0.282 1.282 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.036 0.964 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.013 0.987 49 H 0.014 0.986 50 H 0.080 0.920 51 H 0.038 0.962 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -12.131 -20.235 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.035 4.035 3 N -0.189 5.189 4 C -0.025 4.025 5 N -0.177 5.177 6 C -0.059 4.059 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.154 4.154 10 C -0.096 4.096 11 H 0.096 0.904 12 C -0.199 4.199 13 C -0.055 4.055 14 N -0.166 5.166 15 N -0.176 5.176 16 C -0.040 4.040 17 C 0.138 3.862 18 C -0.180 4.180 19 C -0.173 4.173 20 C -0.555 4.555 21 H 0.066 0.934 22 C -0.167 4.167 23 N -0.539 5.539 24 Si 0.772 3.228 25 H -0.207 1.207 26 H -0.201 1.201 27 H -0.208 1.208 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.033 0.967 49 H 0.034 0.966 50 H 0.098 0.902 51 H 0.057 0.943 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.518 -10.424 -20.378 23.331 hybrid contribution -0.059 -0.497 1.515 1.595 sum -4.577 -10.921 -18.863 22.271 Atomic orbital electron populations 1.22555 0.92536 1.05264 1.03544 1.22402 0.97293 0.78246 1.05540 1.47538 1.50300 1.14456 1.06617 1.23021 1.03814 0.89462 0.86220 1.55987 1.07279 1.46654 1.07790 1.22287 0.84234 1.00378 0.98998 1.21408 1.02213 0.99491 0.92335 1.21909 0.97881 0.95888 0.99233 1.21524 0.93730 0.97906 1.02247 1.20955 0.96577 1.00483 0.91635 0.90418 1.21817 0.95721 1.00236 1.02132 1.21324 0.94109 0.91930 0.98124 1.74311 1.19953 1.18618 1.03761 1.74143 1.21781 1.19665 1.02015 1.25776 0.97276 0.87970 0.93005 1.16847 0.94657 0.94807 0.79930 1.21886 0.94729 0.97455 1.03905 1.21723 0.96833 0.96344 1.02439 1.21157 1.47361 0.95864 0.91133 0.93395 1.25327 0.94915 0.97956 0.98491 1.69839 1.49409 1.23020 1.11669 0.85818 0.78397 0.80457 0.78125 1.20665 1.20059 1.20766 0.87232 0.92640 0.90800 0.87461 0.88039 0.90721 0.92393 0.90283 0.91574 0.90946 0.90770 0.89983 0.92362 0.92196 0.90539 0.93435 0.92972 0.94629 0.92799 0.90378 0.96735 0.96645 0.90164 0.94303 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 9.24 71.98 0.67 -3.31 16 2 C 0.09 2.26 5.04 86.38 0.44 2.70 16 3 N -0.49 -18.07 2.81 -514.84 -1.45 -19.51 16 4 C 0.33 12.55 6.26 260.11 1.63 14.18 16 5 N -0.45 -12.78 3.98 -722.16 -2.87 -15.65 16 6 C 0.07 1.44 3.37 85.45 0.29 1.73 16 7 C -0.12 -1.95 5.41 30.18 0.16 -1.79 16 8 C -0.11 -1.29 5.91 31.28 0.18 -1.11 16 9 C -0.12 -1.41 4.88 30.26 0.15 -1.26 16 10 C -0.08 -1.28 2.44 -11.04 -0.03 -1.30 16 11 H 0.08 1.45 7.11 -2.39 -0.02 1.43 16 12 C -0.14 -1.96 8.90 71.98 0.64 -1.32 16 13 C 0.07 1.73 4.16 88.07 0.37 2.10 16 14 N -0.33 -15.63 12.23 -58.00 -0.71 -16.34 16 15 N -0.34 -17.89 11.00 -49.53 -0.54 -18.43 16 16 C 0.23 10.77 6.33 137.64 0.87 11.64 16 17 C 0.14 6.83 0.48 -53.67 -0.03 6.81 16 18 C -0.12 -5.37 6.98 71.98 0.50 -4.87 16 19 C -0.11 -5.24 8.06 71.98 0.58 -4.66 16 20 C -0.52 -29.08 7.91 25.60 0.20 -28.88 16 21 H 0.05 2.93 6.95 -2.91 -0.02 2.91 16 22 C 0.03 1.76 5.12 84.66 0.43 2.20 16 23 N -0.90 -47.69 9.40 21.45 0.20 -47.49 16 24 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.54 5.70 -2.39 -0.01 1.53 16 30 H 0.07 1.47 4.51 -2.39 -0.01 1.45 16 31 H 0.11 2.20 5.42 -2.39 -0.01 2.19 16 32 H 0.10 2.76 4.67 -2.39 -0.01 2.75 16 33 H 0.07 1.31 4.76 -2.39 -0.01 1.29 16 34 H 0.06 1.51 7.13 -2.39 -0.02 1.49 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.34 7.27 -2.39 -0.02 1.33 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.75 7.69 -2.39 -0.02 0.74 16 40 H 0.06 0.71 6.57 -2.39 -0.02 0.69 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.81 8.10 -2.38 -0.02 0.79 16 43 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.05 1.49 7.84 -2.38 -0.02 1.47 16 45 H 0.04 0.76 5.06 -2.39 -0.01 0.75 16 46 H 0.05 1.94 4.52 -2.38 -0.01 1.93 16 47 H 0.08 3.81 5.90 -2.39 -0.01 3.79 16 48 H 0.01 0.63 7.92 -2.39 -0.02 0.61 16 49 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 3.89 6.26 -2.39 -0.01 3.87 16 51 H 0.04 1.46 5.70 -2.39 -0.01 1.45 16 52 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -68.20 365.19 4.64 -63.56 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.93 Total: 14.28 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 7.06 Total: -7.15 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -5.37 Total: -117.43 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -68.20 4.64 -63.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263035007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.643 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds