Wall clock time and date at job start Sat Apr 11 2020 00:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46657 * 2 1 4 4 C 1.36445 * 127.13671 * 268.32853 * 3 2 1 5 5 N 1.38582 * 126.47604 * 359.70641 * 4 3 2 6 6 C 1.46778 * 110.99684 * 60.47337 * 5 4 3 7 7 C 1.52849 * 110.07297 * 168.47259 * 6 5 4 8 8 C 1.53237 * 109.38366 * 77.03805 * 7 6 5 9 9 C 1.53090 * 108.81842 * 285.44352 * 8 7 6 10 10 C 1.52893 * 109.33818 * 316.35226 * 9 8 7 11 11 C 1.52828 * 109.60159 * 112.58394 * 10 9 8 12 12 C 1.46983 * 111.00065 * 184.68060 * 5 4 3 13 13 N 1.31222 * 107.05305 * 179.97438 * 4 3 2 14 14 N 1.28534 * 109.85939 * 0.02562 * 13 4 3 15 15 C 1.30297 * 110.05132 * 359.97438 * 14 13 4 16 16 C 1.50696 * 126.34621 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47066 * 2.79709 * 16 15 14 18 18 C 1.52999 * 109.47309 * 122.79618 * 16 15 14 19 19 C 1.50699 * 109.47022 * 242.79702 * 16 15 14 20 20 H 1.08002 * 119.99754 * 359.97438 * 19 16 15 21 21 C 1.37883 * 119.99920 * 179.97438 * 19 16 15 22 22 N 1.31512 * 119.99981 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99776 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47209 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46944 * 120.00151 * 23 21 19 26 26 H 1.48503 * 109.47000 * 240.00056 * 23 21 19 27 27 H 1.08999 * 109.46792 * 186.40748 * 1 2 3 28 28 H 1.08998 * 109.47317 * 306.40120 * 1 2 3 29 29 H 1.08996 * 109.47394 * 66.40858 * 1 2 3 30 30 H 1.09006 * 109.46789 * 240.00585 * 2 1 3 31 31 H 1.08995 * 109.47448 * 120.00330 * 2 1 3 32 32 H 1.08992 * 109.37276 * 288.66330 * 6 5 4 33 33 H 1.09001 * 109.36816 * 48.29488 * 6 5 4 34 34 H 1.08998 * 109.49069 * 317.06647 * 7 6 5 35 35 H 1.09003 * 109.50694 * 197.02054 * 7 6 5 36 36 H 1.08995 * 109.58321 * 165.63738 * 8 7 6 37 37 H 1.09004 * 109.68579 * 45.30601 * 8 7 6 38 38 H 1.08998 * 109.48888 * 196.39688 * 9 8 7 39 39 H 1.08994 * 109.51397 * 76.33008 * 9 8 7 40 40 H 1.08995 * 109.44609 * 352.53916 * 10 9 8 41 41 H 1.09000 * 109.44464 * 232.61764 * 10 9 8 42 42 H 1.08997 * 109.49106 * 164.00106 * 11 10 9 43 43 H 1.08993 * 109.51125 * 43.94006 * 11 10 9 44 44 H 1.09005 * 109.49634 * 242.56883 * 12 5 4 45 45 H 1.09004 * 109.49636 * 2.62346 * 12 5 4 46 46 H 1.08995 * 109.47196 * 54.15852 * 17 16 15 47 47 H 1.08997 * 109.47612 * 174.16060 * 17 16 15 48 48 H 1.09005 * 109.47239 * 294.15774 * 17 16 15 49 49 H 1.09000 * 109.47256 * 68.42406 * 18 16 15 50 50 H 1.08996 * 109.47414 * 188.42707 * 18 16 15 51 51 H 1.09006 * 109.46805 * 308.42350 * 18 16 15 52 52 H 0.97001 * 120.00093 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3227 2.1473 -1.0873 5 7 2.2344 1.7639 -2.4161 6 6 0.8564 1.4013 -2.7683 7 6 0.7223 1.2600 -4.2843 8 6 1.3256 -0.0775 -4.7259 9 6 2.8519 0.0264 -4.6688 10 6 3.2908 1.3652 -5.2625 11 6 3.8834 2.2445 -4.1620 12 6 2.7504 2.8160 -3.3033 13 7 2.7205 3.3139 -0.6369 14 7 2.6837 3.3216 0.6479 15 6 2.2632 2.1702 1.0897 16 6 2.0803 1.7803 2.5338 17 6 2.4008 2.9783 3.4299 18 6 0.6323 1.3435 2.7648 19 6 3.0081 0.6407 2.8678 20 1 3.6642 0.2387 2.1099 21 6 3.0194 0.1113 4.1409 22 7 2.2201 0.6006 5.0636 23 14 4.1690 -1.3017 4.5546 24 1 4.9582 -1.6665 3.3508 25 1 5.0902 -0.8878 5.6432 26 1 3.3726 -2.4738 4.9989 27 1 -0.3633 -1.0213 0.1147 28 1 -0.3634 0.6098 0.8271 29 1 -0.3634 0.4113 -0.9417 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.5988 0.4549 -2.2928 33 1 0.1770 2.1775 -2.4161 34 1 1.2521 2.0771 -4.7740 35 1 -0.3315 1.2926 -4.5611 36 1 1.0125 -0.3006 -5.7458 37 1 0.9883 -0.8707 -4.0585 38 1 3.2936 -0.7883 -5.2427 39 1 3.1827 -0.0379 -3.6323 40 1 2.4292 1.8666 -5.7033 41 1 4.0425 1.1917 -6.0326 42 1 4.4457 3.0621 -4.6129 43 1 4.5475 1.6476 -3.5371 44 1 1.9483 3.1725 -3.9497 45 1 3.1295 3.6437 -2.7040 46 1 1.8021 3.8346 3.1197 47 1 2.1697 2.7295 4.4657 48 1 3.4592 3.2243 3.3429 49 1 0.4483 0.4046 2.2427 50 1 0.4604 1.2054 3.8323 51 1 -0.0433 2.1095 2.3841 52 1 2.2278 0.2279 5.9591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263035166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:37 Heat of formation + Delta-G solvation = 93.143610 kcal Electronic energy + Delta-G solvation = -29911.940203 eV Core-core repulsion = 26334.447949 eV Total energy + Delta-G solvation = -3577.492254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26066 -39.42277 -36.00421 -35.36069 -34.37258 -32.95939 -31.40882 -30.20097 -29.02873 -27.14747 -26.25762 -25.73910 -25.31326 -23.59253 -22.50580 -22.40300 -21.56395 -19.95360 -19.18112 -18.78028 -17.24812 -16.52560 -16.04400 -15.45511 -15.34773 -14.87637 -14.73733 -14.42245 -14.19464 -13.78567 -13.56376 -13.37841 -13.26971 -12.71421 -12.48661 -12.14164 -11.96003 -11.83346 -11.66437 -11.48721 -11.40389 -11.27878 -11.06036 -10.99983 -10.91457 -10.76295 -10.71156 -10.62347 -10.53225 -10.41326 -10.31672 -10.15429 -9.96259 -9.68408 -9.61764 -9.40381 -9.07129 -8.81267 -8.48608 -7.49575 -6.13089 -4.23643 2.59138 2.95109 3.20223 3.30011 3.33318 3.72336 4.04062 4.31557 4.57002 4.75457 4.81251 4.95164 5.00199 5.06470 5.14515 5.17531 5.29700 5.31926 5.35631 5.44812 5.53078 5.60148 5.63467 5.69799 5.74658 5.77990 5.83584 5.88551 5.95836 6.02847 6.06226 6.10211 6.16019 6.19994 6.32028 6.35720 6.40834 6.55866 6.63108 6.73442 6.76149 6.87503 7.04740 7.08129 7.29090 7.34327 7.53134 7.60617 7.85950 7.93845 8.05273 8.22177 8.73705 9.41881 9.67523 10.88894 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.004104 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.677011 B = 6820.432232 C = 7062.140145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.105 3.895 3 N -0.469 5.469 4 C 0.320 3.680 5 N -0.442 5.442 6 C 0.048 3.952 7 C -0.141 4.141 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.111 4.111 12 C 0.049 3.951 13 N -0.336 5.336 14 N -0.313 5.313 15 C 0.245 3.755 16 C 0.145 3.855 17 C -0.114 4.114 18 C -0.135 4.135 19 C -0.511 4.511 20 H 0.055 0.945 21 C 0.074 3.926 22 N -0.879 5.879 23 Si 0.893 3.107 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.283 1.283 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.017 0.983 47 H 0.084 0.916 48 H 0.035 0.965 49 H 0.043 0.957 50 H 0.090 0.910 51 H 0.010 0.990 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -2.706 -17.166 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.018 4.018 3 N -0.163 5.163 4 C -0.037 4.037 5 N -0.166 5.166 6 C -0.079 4.079 7 C -0.178 4.178 8 C -0.149 4.149 9 C -0.159 4.159 10 C -0.161 4.161 11 C -0.149 4.149 12 C -0.078 4.078 13 N -0.180 5.180 14 N -0.150 5.150 15 C -0.023 4.023 16 C 0.142 3.858 17 C -0.172 4.172 18 C -0.193 4.193 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.129 4.129 22 N -0.516 5.516 23 Si 0.721 3.279 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.209 1.209 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.036 0.964 47 H 0.103 0.897 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.029 0.971 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.774 -1.724 -17.064 17.562 hybrid contribution -0.240 -1.632 0.251 1.668 sum -4.014 -3.356 -16.814 17.609 Atomic orbital electron populations 1.22623 0.95084 1.03426 1.03260 1.21879 0.94827 0.79849 1.05261 1.46094 1.51170 1.13435 1.05552 1.22442 1.05015 0.89018 0.87242 1.58733 1.20848 1.40166 0.96832 1.22580 0.87115 1.01459 0.96702 1.22213 1.01152 0.99802 0.94593 1.21609 0.96177 0.96614 1.00459 1.21683 0.95192 0.96415 1.02658 1.21749 1.00242 0.96434 0.97633 1.21696 0.97369 0.99286 0.96566 1.22485 0.97604 0.92969 0.94781 1.74281 1.23614 1.15341 1.04766 1.73957 1.20545 1.19079 1.01448 1.25992 0.97096 0.86454 0.92719 1.16883 0.94534 0.95215 0.79142 1.21597 0.99268 0.94564 1.01817 1.22101 0.95193 0.97625 1.04420 1.20895 1.21697 1.15935 0.96502 0.92681 1.24831 0.95323 0.96795 0.95960 1.69846 1.37310 1.41150 1.03297 0.86509 0.80840 0.81961 0.78591 1.19867 1.20774 1.20895 0.90843 0.89949 0.92582 0.89933 0.86582 0.89473 0.94283 0.89167 0.91457 0.92549 0.92076 0.93093 0.89922 0.91523 0.92763 0.91726 0.91052 0.91544 0.88753 0.96365 0.89727 0.94535 0.93827 0.89140 0.97103 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 9.19 37.16 0.34 -2.23 16 2 C 0.10 1.71 5.08 -4.04 -0.02 1.69 16 3 N -0.47 -9.23 2.81 -114.08 -0.32 -9.56 16 4 C 0.32 6.10 7.08 -318.88 -2.26 3.84 16 5 N -0.44 -6.45 3.00 -174.50 -0.52 -6.97 16 6 C 0.05 0.59 4.13 -3.97 -0.02 0.57 16 7 C -0.14 -1.31 5.32 -26.69 -0.14 -1.45 16 8 C -0.11 -0.99 5.77 -26.56 -0.15 -1.14 16 9 C -0.12 -1.20 5.50 -26.74 -0.15 -1.35 16 10 C -0.12 -1.15 5.46 -26.87 -0.15 -1.30 16 11 C -0.11 -1.24 5.69 -26.71 -0.15 -1.39 16 12 C 0.05 0.64 5.21 -3.67 -0.02 0.62 16 13 N -0.34 -7.43 10.46 30.31 0.32 -7.11 16 14 N -0.31 -7.63 11.47 32.99 0.38 -7.25 16 15 C 0.25 5.67 6.27 -154.02 -0.97 4.71 16 16 C 0.15 3.47 0.52 -156.82 -0.08 3.39 16 17 C -0.11 -2.81 7.68 37.16 0.29 -2.52 16 18 C -0.14 -2.98 6.75 37.16 0.25 -2.73 16 19 C -0.51 -12.95 6.57 -34.44 -0.23 -13.17 16 20 H 0.05 1.45 7.59 -52.49 -0.40 1.05 16 21 C 0.07 1.86 5.15 -17.82 -0.09 1.77 16 22 N -0.88 -22.52 9.52 55.43 0.53 -21.99 16 23 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.31 5.10 -51.93 -0.26 1.05 16 29 H 0.06 0.70 5.35 -51.93 -0.28 0.42 16 30 H 0.08 1.19 7.63 -51.93 -0.40 0.79 16 31 H 0.12 2.12 6.10 -51.93 -0.32 1.80 16 32 H 0.09 1.04 4.10 -51.93 -0.21 0.83 16 33 H 0.04 0.53 8.03 -51.93 -0.42 0.11 16 34 H 0.09 0.83 2.86 -51.93 -0.15 0.69 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 1.01 6.33 -51.93 -0.33 0.68 16 40 H 0.07 0.57 5.42 -51.93 -0.28 0.29 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 44 H 0.07 0.76 5.46 -51.93 -0.28 0.47 16 45 H 0.09 1.50 6.29 -51.93 -0.33 1.17 16 46 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 47 H 0.08 2.16 6.23 -51.93 -0.32 1.83 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.04 0.88 4.52 -51.93 -0.23 0.65 16 50 H 0.09 2.16 6.31 -51.93 -0.33 1.83 16 51 H 0.01 0.21 8.00 -51.93 -0.42 -0.20 16 52 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -28.16 363.83 -10.98 -39.14 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.28 Total: 3.99 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -3.54 Total: -10.71 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.38 Total: -52.88 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.16 -10.98 -39.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263035166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.288 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds