Wall clock time and date at job start Sat Apr 11 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46657 * 2 1 4 4 C 1.36445 * 127.13671 * 268.32853 * 3 2 1 5 5 N 1.38582 * 126.47604 * 359.70641 * 4 3 2 6 6 C 1.46778 * 110.99684 * 60.47337 * 5 4 3 7 7 C 1.52849 * 110.07297 * 168.47259 * 6 5 4 8 8 C 1.53237 * 109.38366 * 77.03805 * 7 6 5 9 9 C 1.53090 * 108.81842 * 285.44352 * 8 7 6 10 10 C 1.52893 * 109.33818 * 316.35226 * 9 8 7 11 11 C 1.52828 * 109.60159 * 112.58394 * 10 9 8 12 12 C 1.46983 * 111.00065 * 184.68060 * 5 4 3 13 13 N 1.31222 * 107.05305 * 179.97438 * 4 3 2 14 14 N 1.28534 * 109.85939 * 0.02562 * 13 4 3 15 15 C 1.30297 * 110.05132 * 359.97438 * 14 13 4 16 16 C 1.50696 * 126.34621 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47066 * 2.79709 * 16 15 14 18 18 C 1.52999 * 109.47309 * 122.79618 * 16 15 14 19 19 C 1.50699 * 109.47022 * 242.79702 * 16 15 14 20 20 H 1.08002 * 119.99754 * 359.97438 * 19 16 15 21 21 C 1.37883 * 119.99920 * 179.97438 * 19 16 15 22 22 N 1.31512 * 119.99981 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99776 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47209 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46944 * 120.00151 * 23 21 19 26 26 H 1.48503 * 109.47000 * 240.00056 * 23 21 19 27 27 H 1.08999 * 109.46792 * 186.40748 * 1 2 3 28 28 H 1.08998 * 109.47317 * 306.40120 * 1 2 3 29 29 H 1.08996 * 109.47394 * 66.40858 * 1 2 3 30 30 H 1.09006 * 109.46789 * 240.00585 * 2 1 3 31 31 H 1.08995 * 109.47448 * 120.00330 * 2 1 3 32 32 H 1.08992 * 109.37276 * 288.66330 * 6 5 4 33 33 H 1.09001 * 109.36816 * 48.29488 * 6 5 4 34 34 H 1.08998 * 109.49069 * 317.06647 * 7 6 5 35 35 H 1.09003 * 109.50694 * 197.02054 * 7 6 5 36 36 H 1.08995 * 109.58321 * 165.63738 * 8 7 6 37 37 H 1.09004 * 109.68579 * 45.30601 * 8 7 6 38 38 H 1.08998 * 109.48888 * 196.39688 * 9 8 7 39 39 H 1.08994 * 109.51397 * 76.33008 * 9 8 7 40 40 H 1.08995 * 109.44609 * 352.53916 * 10 9 8 41 41 H 1.09000 * 109.44464 * 232.61764 * 10 9 8 42 42 H 1.08997 * 109.49106 * 164.00106 * 11 10 9 43 43 H 1.08993 * 109.51125 * 43.94006 * 11 10 9 44 44 H 1.09005 * 109.49634 * 242.56883 * 12 5 4 45 45 H 1.09004 * 109.49636 * 2.62346 * 12 5 4 46 46 H 1.08995 * 109.47196 * 54.15852 * 17 16 15 47 47 H 1.08997 * 109.47612 * 174.16060 * 17 16 15 48 48 H 1.09005 * 109.47239 * 294.15774 * 17 16 15 49 49 H 1.09000 * 109.47256 * 68.42406 * 18 16 15 50 50 H 1.08996 * 109.47414 * 188.42707 * 18 16 15 51 51 H 1.09006 * 109.46805 * 308.42350 * 18 16 15 52 52 H 0.97001 * 120.00093 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3227 2.1473 -1.0873 5 7 2.2344 1.7639 -2.4161 6 6 0.8564 1.4013 -2.7683 7 6 0.7223 1.2600 -4.2843 8 6 1.3256 -0.0775 -4.7259 9 6 2.8519 0.0264 -4.6688 10 6 3.2908 1.3652 -5.2625 11 6 3.8834 2.2445 -4.1620 12 6 2.7504 2.8160 -3.3033 13 7 2.7205 3.3139 -0.6369 14 7 2.6837 3.3216 0.6479 15 6 2.2632 2.1702 1.0897 16 6 2.0803 1.7803 2.5338 17 6 2.4008 2.9783 3.4299 18 6 0.6323 1.3435 2.7648 19 6 3.0081 0.6407 2.8678 20 1 3.6642 0.2387 2.1099 21 6 3.0194 0.1113 4.1409 22 7 2.2201 0.6006 5.0636 23 14 4.1690 -1.3017 4.5546 24 1 4.9582 -1.6665 3.3508 25 1 5.0902 -0.8878 5.6432 26 1 3.3726 -2.4738 4.9989 27 1 -0.3633 -1.0213 0.1147 28 1 -0.3634 0.6098 0.8271 29 1 -0.3634 0.4113 -0.9417 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.5988 0.4549 -2.2928 33 1 0.1770 2.1775 -2.4161 34 1 1.2521 2.0771 -4.7740 35 1 -0.3315 1.2926 -4.5611 36 1 1.0125 -0.3006 -5.7458 37 1 0.9883 -0.8707 -4.0585 38 1 3.2936 -0.7883 -5.2427 39 1 3.1827 -0.0379 -3.6323 40 1 2.4292 1.8666 -5.7033 41 1 4.0425 1.1917 -6.0326 42 1 4.4457 3.0621 -4.6129 43 1 4.5475 1.6476 -3.5371 44 1 1.9483 3.1725 -3.9497 45 1 3.1295 3.6437 -2.7040 46 1 1.8021 3.8346 3.1197 47 1 2.1697 2.7295 4.4657 48 1 3.4592 3.2243 3.3429 49 1 0.4483 0.4046 2.2427 50 1 0.4604 1.2054 3.8323 51 1 -0.0433 2.1095 2.3841 52 1 2.2278 0.2279 5.9591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263035166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:36 Heat of formation + Delta-G solvation = 81.831323 kcal Electronic energy + Delta-G solvation = -29912.430741 eV Core-core repulsion = 26334.447949 eV Total energy + Delta-G solvation = -3577.982791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.85837 -40.44671 -37.74897 -36.62678 -35.69724 -33.85057 -33.29870 -31.56508 -30.37743 -28.40713 -27.60961 -27.32115 -27.15898 -24.95817 -23.78447 -23.43883 -22.91943 -21.24529 -20.50018 -20.07341 -18.67423 -18.14714 -17.29437 -16.97050 -16.79387 -16.37881 -15.99932 -15.46186 -15.29643 -15.18559 -14.76595 -14.56377 -14.31140 -14.13968 -13.89661 -13.61523 -13.37248 -13.30501 -12.92541 -12.87878 -12.76614 -12.65236 -12.54551 -12.42430 -12.31806 -12.26116 -12.13285 -11.90656 -11.79545 -11.75665 -11.46501 -11.43182 -11.34268 -11.19417 -10.98789 -10.93247 -10.80905 -10.45116 -10.30478 -9.00821 -8.07192 -6.23468 1.05096 1.41029 1.46597 1.48633 1.54716 2.03258 2.44092 2.75368 3.17072 3.66205 3.74665 3.87806 3.91370 3.98269 4.11891 4.13877 4.15239 4.24574 4.30290 4.37518 4.43386 4.50111 4.59617 4.65705 4.71436 4.72948 4.78390 4.84821 4.89110 4.89595 4.99113 5.03473 5.07490 5.09409 5.14180 5.19563 5.26034 5.29887 5.33564 5.36156 5.39252 5.50003 5.51541 5.56766 5.59886 5.73352 5.74708 5.91669 5.99749 6.08191 6.27691 6.42392 6.74941 7.43733 8.00538 8.93729 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.004104 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.677011 B = 6820.432232 C = 7062.140145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 N -0.468 5.468 4 C 0.339 3.661 5 N -0.434 5.434 6 C 0.046 3.954 7 C -0.133 4.133 8 C -0.108 4.108 9 C -0.123 4.123 10 C -0.118 4.118 11 C -0.105 4.105 12 C 0.046 3.954 13 N -0.369 5.369 14 N -0.347 5.347 15 C 0.225 3.775 16 C 0.142 3.858 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.519 4.519 20 H 0.039 0.961 21 C 0.040 3.960 22 N -0.894 5.894 23 Si 0.948 3.052 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.015 0.985 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.014 0.986 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -4.503 -19.893 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 N -0.161 5.161 4 C -0.019 4.019 5 N -0.159 5.159 6 C -0.080 4.080 7 C -0.170 4.170 8 C -0.145 4.145 9 C -0.161 4.161 10 C -0.155 4.155 11 C -0.143 4.143 12 C -0.080 4.080 13 N -0.213 5.213 14 N -0.185 5.185 15 C -0.044 4.044 16 C 0.139 3.861 17 C -0.161 4.161 18 C -0.178 4.178 19 C -0.558 4.558 20 H 0.057 0.943 21 C -0.161 4.161 22 N -0.532 5.532 23 Si 0.774 3.226 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.038 0.962 47 H 0.092 0.908 48 H 0.035 0.965 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.033 0.967 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.924 -3.533 -19.806 20.713 hybrid contribution 0.147 -1.071 1.000 1.472 sum -4.777 -4.604 -18.806 19.942 Atomic orbital electron populations 1.22559 0.92807 1.04963 1.03183 1.22098 0.96656 0.78050 1.05292 1.46214 1.50868 1.14298 1.04764 1.22917 1.02184 0.87972 0.88811 1.58974 1.22496 1.39923 0.94553 1.22737 0.84971 1.01099 0.99188 1.22208 1.02682 1.00256 0.91858 1.21605 0.95083 0.96189 1.01658 1.21663 0.96238 0.97019 1.01137 1.21718 1.01052 0.95740 0.96954 1.21649 0.96375 0.99725 0.96590 1.22596 0.98944 0.91944 0.94530 1.74217 1.25908 1.17232 1.03928 1.73845 1.21474 1.20301 1.02833 1.25714 0.98484 0.87062 0.93151 1.16816 0.95286 0.94239 0.79750 1.21454 0.97851 0.95283 1.01467 1.21921 0.94108 0.98486 1.03253 1.20902 1.21931 1.16522 0.96448 0.94256 1.25377 0.96415 0.98579 0.95770 1.69930 1.37946 1.41830 1.03469 0.85666 0.79178 0.79916 0.77794 1.20310 1.21159 1.19712 0.87913 0.92117 0.90996 0.87753 0.88618 0.88946 0.95447 0.88867 0.89292 0.90555 0.92042 0.92306 0.92588 0.90008 0.91543 0.90455 0.93407 0.89208 0.91742 0.96198 0.90838 0.96529 0.92278 0.90989 0.96663 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 9.19 71.98 0.66 -3.88 16 2 C 0.10 3.19 5.08 86.38 0.44 3.63 16 3 N -0.47 -18.52 2.81 -514.85 -1.45 -19.97 16 4 C 0.34 12.97 7.08 260.11 1.84 14.82 16 5 N -0.43 -12.21 3.00 -706.00 -2.12 -14.34 16 6 C 0.05 1.02 4.13 86.28 0.36 1.37 16 7 C -0.13 -1.97 5.32 30.62 0.16 -1.80 16 8 C -0.11 -1.48 5.77 30.70 0.18 -1.31 16 9 C -0.12 -2.07 5.50 30.59 0.17 -1.91 16 10 C -0.12 -1.83 5.46 30.50 0.17 -1.66 16 11 C -0.11 -2.20 5.69 30.61 0.17 -2.03 16 12 C 0.05 1.17 5.21 86.36 0.45 1.62 16 13 N -0.37 -16.80 10.46 -58.01 -0.61 -17.40 16 14 N -0.35 -17.56 11.47 -49.54 -0.57 -18.13 16 15 C 0.23 10.71 6.27 137.64 0.86 11.57 16 16 C 0.14 6.96 0.52 -53.68 -0.03 6.94 16 17 C -0.10 -5.23 7.68 71.98 0.55 -4.68 16 18 C -0.12 -5.33 6.75 71.98 0.49 -4.84 16 19 C -0.52 -26.83 6.57 25.60 0.17 -26.66 16 20 H 0.04 2.12 7.59 -2.91 -0.02 2.09 16 21 C 0.04 2.03 5.15 84.66 0.44 2.46 16 22 N -0.89 -46.26 9.52 21.45 0.20 -46.06 16 23 Si 0.95 41.14 29.54 68.60 2.03 43.16 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.85 5.10 -2.39 -0.01 1.84 16 29 H 0.07 1.60 5.35 -2.39 -0.01 1.59 16 30 H 0.10 2.81 7.63 -2.38 -0.02 2.79 16 31 H 0.10 3.47 6.10 -2.39 -0.01 3.45 16 32 H 0.09 1.93 4.10 -2.39 -0.01 1.92 16 33 H 0.03 0.68 8.03 -2.39 -0.02 0.66 16 34 H 0.09 1.34 2.86 -2.39 -0.01 1.34 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.87 7.84 -2.39 -0.02 0.85 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.26 6.33 -2.39 -0.02 1.25 16 40 H 0.08 1.06 5.42 -2.39 -0.01 1.05 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.23 7.79 -2.39 -0.02 1.21 16 44 H 0.09 1.84 5.46 -2.38 -0.01 1.82 16 45 H 0.06 2.07 6.29 -2.39 -0.01 2.05 16 46 H 0.02 0.95 8.10 -2.39 -0.02 0.93 16 47 H 0.07 3.88 6.23 -2.39 -0.01 3.86 16 48 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.06 2.40 4.52 -2.39 -0.01 2.39 16 50 H 0.07 3.48 6.31 -2.39 -0.02 3.46 16 51 H 0.01 0.62 8.00 -2.38 -0.02 0.60 16 52 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -63.14 363.83 5.49 -57.65 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.93 Total: 21.45 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 7.08 Total: -6.36 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -4.54 Total: -115.90 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -63.14 5.49 -57.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263035166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.480 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds