Wall clock time and date at job start Sat Apr 11 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47474 * 2 1 4 4 C 1.36741 * 127.13383 * 269.99467 * 3 2 1 5 5 C 1.50698 * 126.35052 * 0.03890 * 4 3 2 6 6 C 1.53003 * 109.46705 * 270.00057 * 5 4 3 7 7 C 1.50702 * 109.46706 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00635 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99653 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00124 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.46846 * 89.99482 * 11 9 7 13 13 H 1.48492 * 109.47193 * 209.99609 * 11 9 7 14 14 H 1.48501 * 109.47206 * 330.00213 * 11 9 7 15 15 N 1.30293 * 107.30240 * 180.02562 * 4 3 2 16 16 N 1.28530 * 110.05600 * 359.97438 * 15 4 3 17 17 C 1.31219 * 109.85703 * 0.02562 * 16 15 4 18 18 N 1.38582 * 126.46719 * 180.02562 * 17 16 15 19 19 C 1.46900 * 111.00187 * 64.88625 * 18 17 16 20 20 C 1.46896 * 111.00219 * 300.92203 * 18 17 16 21 21 C 1.52998 * 109.47630 * 300.00501 * 20 18 17 22 22 C 1.52997 * 109.47555 * 179.97438 * 21 20 18 23 23 C 1.53004 * 109.46591 * 60.00049 * 22 21 20 24 24 C 1.52998 * 109.47102 * 60.00334 * 23 22 21 25 25 C 1.53005 * 109.47354 * 299.99809 * 23 22 21 26 26 C 1.53001 * 109.46906 * 60.00230 * 25 23 22 27 27 H 1.09000 * 109.47278 * 175.34171 * 1 2 3 28 28 H 1.09002 * 109.47087 * 295.34183 * 1 2 3 29 29 H 1.08996 * 109.47072 * 55.34220 * 1 2 3 30 30 H 1.09003 * 109.47144 * 239.99476 * 2 1 3 31 31 H 1.09003 * 109.46962 * 120.00242 * 2 1 3 32 32 H 1.08997 * 109.46945 * 29.99654 * 5 4 3 33 33 H 1.08996 * 109.46935 * 150.00492 * 5 4 3 34 34 H 1.09001 * 109.47527 * 299.99671 * 6 5 4 35 35 H 1.09001 * 109.47505 * 60.00354 * 6 5 4 36 36 H 0.97004 * 119.99411 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47287 * 53.66848 * 19 18 17 38 38 H 1.08998 * 109.47206 * 173.67739 * 19 18 17 39 39 H 1.09009 * 109.46864 * 293.67315 * 19 18 17 40 40 H 1.09006 * 109.46609 * 60.00838 * 20 18 17 41 41 H 1.08996 * 109.46897 * 300.00032 * 21 20 18 42 42 H 1.09005 * 109.46668 * 59.99492 * 21 20 18 43 43 H 1.09006 * 109.46998 * 300.00529 * 22 21 20 44 44 H 1.08995 * 109.47375 * 179.97438 * 22 21 20 45 45 H 1.09010 * 109.46915 * 180.02562 * 23 22 21 46 46 H 1.08993 * 109.46893 * 299.99419 * 24 23 22 47 47 H 1.08991 * 109.47121 * 60.00029 * 24 23 22 48 48 H 1.09006 * 109.46953 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.46864 * 300.00667 * 25 23 22 50 50 H 1.08996 * 109.46858 * 180.02562 * 25 23 22 51 51 H 1.08999 * 109.46858 * 179.97438 * 26 25 23 52 52 H 1.09006 * 109.46872 * 59.99680 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2937 2.1594 -1.0901 5 6 2.1502 1.7557 -2.5349 6 6 3.4614 1.1374 -3.0243 7 6 3.3178 0.7332 -4.4689 8 1 2.3848 0.9009 -4.9864 9 6 4.3779 0.1502 -5.1303 10 7 4.2526 -0.2021 -6.3912 11 14 5.9918 -0.1392 -4.2356 12 1 5.9718 -1.4814 -3.6003 13 1 7.1148 -0.0668 -5.2044 14 1 6.1718 0.9003 -3.1905 15 7 2.7028 3.3147 -0.6481 16 7 2.7042 3.3196 0.6372 17 6 2.2931 2.1577 1.0877 18 7 2.1620 1.7895 2.4173 19 6 1.1275 2.5899 3.0857 20 6 3.4466 1.8949 3.1219 21 6 4.4707 0.9734 2.4563 22 6 5.8088 1.0838 3.1899 23 6 5.6246 0.6702 4.6514 24 6 5.1266 -0.7751 4.7136 25 6 4.6006 1.5917 5.3171 26 6 3.2625 1.4815 4.5835 27 1 -0.3634 -1.0243 -0.0835 28 1 -0.3633 0.4399 0.9288 29 1 -0.3633 0.5844 -0.8453 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3465 1.0256 -2.6301 33 1 1.9162 2.6343 -3.1361 34 1 4.2652 1.8675 -2.9291 35 1 3.6955 0.2588 -2.4231 36 1 4.9983 -0.6126 -6.8564 37 1 0.1979 2.5276 2.5201 38 1 0.9662 2.2068 4.0933 39 1 1.4509 3.6295 3.1398 40 1 3.8016 2.9246 3.0780 41 1 4.1156 -0.0561 2.5003 42 1 4.6020 1.2683 1.4152 43 1 6.1636 2.1135 3.1456 44 1 6.5382 0.4270 2.7160 45 1 6.5779 0.7492 5.1743 46 1 4.1733 -0.8536 4.1910 47 1 5.8561 -1.4315 4.2395 48 1 4.9958 -1.0698 5.7549 49 1 4.9555 2.6214 5.2727 50 1 4.4698 1.2974 6.3584 51 1 2.5328 2.1376 5.0580 52 1 2.9077 0.4517 4.6278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263041673.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:39 Heat of formation + Delta-G solvation = 58.258413 kcal Electronic energy + Delta-G solvation = -28838.283791 eV Core-core repulsion = 25259.278802 eV Total energy + Delta-G solvation = -3579.004990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.70940 -39.79025 -36.70697 -35.56115 -34.02920 -31.96465 -31.19426 -30.99073 -30.33434 -28.90070 -27.06323 -26.08907 -25.15866 -23.90541 -22.80737 -22.20871 -21.36700 -20.14009 -19.94022 -18.78212 -17.22673 -16.88378 -16.46017 -16.00613 -15.59621 -14.92118 -14.77375 -14.63369 -14.29603 -14.22031 -13.59331 -13.48083 -13.36187 -13.35332 -12.94389 -12.78646 -12.67535 -12.60103 -12.44624 -12.27965 -11.83078 -11.79070 -11.60860 -11.37436 -11.29940 -11.21753 -11.14950 -11.09555 -10.60662 -10.50025 -10.42152 -10.26806 -10.17679 -10.07888 -9.83039 -9.81509 -9.30445 -8.80710 -8.60297 -8.50401 -6.10876 -4.10211 2.03274 2.46071 3.19295 3.26140 3.35479 3.41449 3.66042 4.37611 4.40382 4.49704 4.61688 4.71812 4.82411 4.88784 4.92245 4.97104 5.05745 5.10508 5.18531 5.22453 5.25766 5.26996 5.30079 5.36834 5.42153 5.43954 5.49592 5.56509 5.60805 5.60988 5.65024 5.72226 5.76379 5.81498 5.89664 5.93395 5.98771 6.02738 6.05877 6.15037 6.21714 6.28059 6.30219 6.35332 6.52093 6.65907 6.87478 7.11274 7.27883 7.44071 7.68545 8.43497 8.92482 9.10267 9.51005 11.02041 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.003963 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.757128 B = 7062.848107 C = 8227.528179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.463 5.463 4 C 0.209 3.791 5 C -0.023 4.023 6 C -0.003 4.003 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.875 3.125 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.265 1.265 15 N -0.297 5.297 16 N -0.316 5.316 17 C 0.328 3.672 18 N -0.463 5.463 19 C 0.035 3.965 20 C 0.099 3.901 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.092 4.092 24 C -0.151 4.151 25 C -0.112 4.112 26 C -0.114 4.114 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.025 0.975 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.065 0.935 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -1.210 25.425 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.156 5.156 4 C -0.058 4.058 5 C -0.062 4.062 6 C -0.042 4.042 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.702 3.298 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.189 1.189 15 N -0.137 5.137 16 N -0.160 5.160 17 C -0.028 4.028 18 N -0.188 5.188 19 C -0.113 4.113 20 C -0.009 4.009 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.111 4.111 24 C -0.208 4.208 25 C -0.150 4.150 26 C -0.152 4.152 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.084 0.916 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.732 -0.371 25.292 25.568 hybrid contribution 0.664 -0.836 0.303 1.110 sum -3.068 -1.207 25.595 25.806 Atomic orbital electron populations 1.22095 0.94064 1.03192 1.02794 1.21842 0.95617 0.79131 1.05127 1.46422 1.49507 1.13685 1.05939 1.25605 0.99611 0.88056 0.92547 1.20228 1.01501 1.01922 0.82596 1.19541 0.92157 0.95351 0.97129 1.21012 1.00895 1.40222 0.93929 0.90590 1.24953 0.98499 0.94873 0.94661 1.69900 1.32152 1.41892 1.09808 0.86852 0.83884 0.79025 0.80065 1.20324 1.21143 1.18931 1.74051 1.19294 1.18157 1.02202 1.74486 1.19649 1.17511 1.04325 1.22097 1.04412 0.88366 0.87939 1.58689 1.09100 1.54946 0.96072 1.22417 0.93707 0.95955 0.99186 1.21725 0.86781 0.99416 0.92953 1.21580 0.94343 1.00006 0.99171 1.21524 0.96855 1.01712 0.94859 1.21117 0.98602 0.95375 0.95972 1.21944 1.01818 0.95674 1.01412 1.21540 0.94762 0.99804 0.98854 1.21693 0.97598 1.02565 0.93316 0.90421 0.92138 0.91783 0.88114 0.88616 0.90619 0.88759 0.95681 0.97354 0.92592 0.91490 0.90009 0.93827 0.92331 0.91010 0.92260 0.91863 0.91637 0.91298 0.91778 0.92872 0.92964 0.91900 0.91634 0.91622 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.32 6.61 -4.04 -0.03 1.29 16 3 N -0.46 -7.38 2.81 -114.09 -0.32 -7.70 16 4 C 0.21 3.98 7.32 -154.02 -1.13 2.85 16 5 C -0.02 -0.44 5.36 -27.88 -0.15 -0.59 16 6 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 7 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 11 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 15 N -0.30 -6.23 12.18 32.99 0.40 -5.83 16 16 N -0.32 -6.05 12.12 30.31 0.37 -5.68 16 17 C 0.33 5.21 5.03 -318.88 -1.60 3.60 16 18 N -0.46 -5.67 4.66 -174.76 -0.82 -6.48 16 19 C 0.03 0.36 8.97 60.06 0.54 0.90 16 20 C 0.10 1.12 1.88 -67.71 -0.13 0.99 16 21 C -0.11 -1.37 4.80 -26.73 -0.13 -1.50 16 22 C -0.11 -1.15 5.45 -26.73 -0.15 -1.30 16 23 C -0.09 -0.76 3.19 -90.62 -0.29 -1.05 16 24 C -0.15 -1.18 8.50 37.16 0.32 -0.86 16 25 C -0.11 -0.85 5.45 -26.73 -0.15 -0.99 16 26 C -0.11 -0.94 4.57 -26.73 -0.12 -1.07 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.32 7.88 -51.93 -0.41 0.91 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 33 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.08 0.62 6.38 -51.93 -0.33 0.29 16 39 H 0.04 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 42 H 0.06 0.93 7.22 -51.93 -0.38 0.56 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 46 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.49 6.40 -51.93 -0.33 0.15 16 52 H 0.08 0.62 6.43 -51.93 -0.33 0.28 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -32.19 397.05 -10.92 -43.11 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -9.47 Total: -2.01 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.17 Total: -11.99 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.41 Total: -52.09 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.19 -10.92 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263041673.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.367 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds