Wall clock time and date at job start Sat Apr 11 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46861 * 2 1 4 4 N 1.46894 * 109.47147 * 184.69856 * 3 2 1 5 5 C 1.46901 * 110.99701 * 199.34845 * 4 3 2 6 6 C 1.52996 * 109.47271 * 66.04249 * 5 4 3 7 7 C 1.52998 * 117.49954 * 243.74607 * 6 5 4 8 8 C 1.53003 * 117.49872 * 175.08729 * 6 5 4 9 9 C 1.38574 * 111.00468 * 75.39116 * 4 3 2 10 10 N 1.31217 * 126.47110 * 57.56514 * 9 4 3 11 11 N 1.28529 * 109.85681 * 179.82301 * 10 9 4 12 12 C 1.30290 * 110.05634 * 0.44713 * 11 10 9 13 13 C 1.50706 * 126.34866 * 179.76248 * 12 11 10 14 14 H 1.08994 * 109.47116 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46793 * 59.96034 * 13 12 11 16 16 C 1.52999 * 109.46961 * 299.96195 * 13 12 11 17 17 C 1.50700 * 109.46823 * 184.99992 * 16 13 12 18 18 H 1.07997 * 120.00414 * 359.97438 * 17 16 13 19 19 C 1.37886 * 119.99919 * 180.02562 * 17 16 13 20 20 N 1.31509 * 119.99709 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99707 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47127 * 90.00588 * 21 19 17 23 23 H 1.48503 * 109.47025 * 210.00133 * 21 19 17 24 24 H 1.48497 * 109.47364 * 329.99926 * 21 19 17 25 25 N 1.36457 * 126.47272 * 237.87138 * 9 4 3 26 26 C 1.46496 * 127.13566 * 0.02562 * 25 9 4 27 27 C 1.52998 * 109.47077 * 95.37489 * 26 25 9 28 28 H 1.09000 * 109.46828 * 184.97010 * 1 2 3 29 29 H 1.08998 * 109.47428 * 304.97235 * 1 2 3 30 30 H 1.09003 * 109.47067 * 64.97667 * 1 2 3 31 31 H 1.08999 * 109.47446 * 240.00098 * 2 1 3 32 32 H 1.09000 * 109.46943 * 119.99324 * 2 1 3 33 33 H 1.08992 * 109.47329 * 64.68963 * 3 2 1 34 34 H 1.09007 * 109.46606 * 304.69420 * 3 2 1 35 35 H 1.09004 * 109.47050 * 186.03929 * 5 4 3 36 36 H 1.08998 * 109.47552 * 306.04043 * 5 4 3 37 37 H 1.09003 * 115.55302 * 29.41938 * 6 5 4 38 38 H 1.09003 * 117.49978 * 0.02562 * 7 6 5 39 39 H 1.09001 * 117.49980 * 145.01859 * 7 6 5 40 40 H 1.09003 * 117.49558 * 214.98182 * 8 6 5 41 41 H 1.09000 * 117.49833 * 359.97438 * 8 6 5 42 42 H 1.08994 * 109.47374 * 299.99945 * 15 13 12 43 43 H 1.08995 * 109.46969 * 60.00077 * 15 13 12 44 44 H 1.09003 * 109.46773 * 179.97438 * 15 13 12 45 45 H 1.09000 * 109.47165 * 304.99672 * 16 13 12 46 46 H 1.08997 * 109.47357 * 65.00258 * 16 13 12 47 47 H 0.97004 * 119.99381 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.47029 * 215.37320 * 26 25 9 49 49 H 1.08992 * 109.47147 * 335.37423 * 26 25 9 50 50 H 1.08998 * 109.47067 * 294.87233 * 27 26 25 51 51 H 1.09001 * 109.47279 * 54.86796 * 27 26 25 52 52 H 1.09004 * 109.47243 * 174.86923 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5045 1.4442 -0.1134 5 6 4.0657 2.7259 0.3341 6 6 3.8165 2.8958 1.8340 7 6 2.9187 4.0538 2.2743 8 6 4.4285 4.1202 2.5176 9 6 3.9027 1.1528 -1.4083 10 7 3.5684 1.8100 -2.4938 11 7 4.1198 1.2671 -3.5200 12 6 4.8251 0.2344 -3.1545 13 6 5.6190 -0.6711 -4.0606 14 1 6.1030 -1.4461 -3.4663 15 6 6.6826 0.1477 -4.7950 16 6 4.6818 -1.3213 -5.0802 17 6 5.4525 -2.3186 -5.9064 18 1 6.5055 -2.4729 -5.7228 19 6 4.8135 -3.0333 -6.8973 20 7 5.4862 -3.9032 -7.6186 21 14 2.9923 -2.7659 -7.2153 22 1 2.8186 -1.6899 -8.2239 23 1 2.3888 -4.0236 -7.7244 24 1 2.3216 -2.3718 -5.9504 25 7 4.7119 0.1247 -1.7962 26 6 5.3305 -0.8869 -0.9359 27 6 4.4525 -2.1396 -0.9092 28 1 -0.3633 -1.0238 0.0890 29 1 -0.3634 0.5890 0.8421 30 1 -0.3633 0.4347 -0.9312 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.7469 1.9316 0.9289 34 1 1.6095 1.9800 -0.8450 35 1 5.1383 2.7405 0.1400 36 1 3.5873 3.5413 -0.2083 37 1 3.7645 1.9716 2.4097 38 1 2.5052 4.6944 1.4953 39 1 2.2762 3.8916 3.1397 40 1 4.7787 4.0016 3.5430 41 1 5.0090 4.8045 1.8988 42 1 6.1984 0.9226 -5.3892 43 1 7.3502 0.6109 -4.0685 44 1 7.2571 -0.5073 -5.4500 45 1 3.8729 -1.8310 -4.5569 46 1 4.2657 -0.5536 -5.7325 47 1 5.0365 -4.4063 -8.3155 48 1 6.3159 -1.1421 -1.3257 49 1 5.4308 -0.4920 0.0750 50 1 3.4992 -1.9051 -0.4357 51 1 4.2770 -2.4822 -1.9290 52 1 4.9558 -2.9241 -0.3439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263050939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:42 Heat of formation + Delta-G solvation = 89.716736 kcal Electronic energy + Delta-G solvation = -28494.636858 eV Core-core repulsion = 24916.996004 eV Total energy + Delta-G solvation = -3577.640854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71017 -38.87132 -36.63292 -35.71969 -34.98111 -33.37104 -32.19042 -30.36030 -29.05409 -27.56552 -27.34006 -25.19367 -24.19817 -23.64123 -22.76925 -22.09825 -21.38231 -20.72856 -20.21731 -18.93378 -17.35335 -16.90505 -16.56339 -16.06691 -15.53358 -15.02860 -14.70502 -14.48646 -14.39004 -14.17305 -13.75499 -13.63631 -13.43985 -13.15893 -13.02264 -12.66822 -12.32890 -12.24161 -11.95461 -11.92987 -11.86415 -11.68764 -11.45120 -11.31376 -11.17291 -11.11458 -11.06044 -10.89193 -10.78618 -10.69440 -10.40211 -10.24586 -10.01074 -9.98943 -9.81571 -9.80112 -9.18582 -8.84261 -8.54694 -8.49540 -6.06352 -4.04674 2.01684 2.42498 3.20372 3.34007 3.40914 3.42675 3.47374 3.64519 4.39640 4.46092 4.58464 4.65393 4.68535 4.71902 4.82561 4.91978 5.01112 5.01763 5.14745 5.20182 5.27899 5.29069 5.31270 5.35904 5.41403 5.44789 5.51181 5.54896 5.56038 5.61967 5.70500 5.75654 5.78534 5.90847 5.93152 5.94876 6.02326 6.03901 6.09826 6.18048 6.22650 6.33841 6.62213 6.63483 6.70805 6.80439 7.00554 7.20187 7.37237 7.43303 7.74426 8.48039 8.96321 9.11298 9.56352 11.06284 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.003475 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.807170 B = 8055.247894 C = 8672.734710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.064 3.936 4 N -0.460 5.460 5 C 0.099 3.901 6 C -0.147 4.147 7 C -0.183 4.183 8 C -0.175 4.175 9 C 0.324 3.676 10 N -0.315 5.315 11 N -0.290 5.290 12 C 0.213 3.787 13 C 0.008 3.992 14 H 0.079 0.921 15 C -0.128 4.128 16 C 0.003 3.997 17 C -0.518 4.518 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.901 5.901 21 Si 0.874 3.126 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.267 1.267 25 N -0.465 5.465 26 C 0.110 3.890 27 C -0.172 4.172 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.080 0.920 45 H 0.013 0.987 46 H 0.026 0.974 47 H 0.263 0.737 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 10.539 22.956 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.063 4.063 4 N -0.185 5.185 5 C -0.029 4.029 6 C -0.166 4.166 7 C -0.220 4.220 8 C -0.213 4.213 9 C -0.032 4.032 10 N -0.159 5.159 11 N -0.129 5.129 12 C -0.054 4.054 13 C -0.014 4.014 14 H 0.097 0.903 15 C -0.186 4.186 16 C -0.036 4.036 17 C -0.556 4.556 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.540 5.540 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.191 1.191 25 N -0.158 5.158 26 C -0.013 4.013 27 C -0.230 4.230 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.073 0.927 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.082 0.918 51 H 0.090 0.910 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.140 11.081 22.253 25.202 hybrid contribution -0.695 -0.406 0.200 0.829 sum -4.835 10.675 22.453 25.327 Atomic orbital electron populations 1.21703 0.95285 1.01845 1.01846 1.21527 0.95668 0.96189 1.02412 1.22291 0.83752 0.97919 1.02338 1.58588 1.11740 1.33305 1.14851 1.21675 0.99904 0.88495 0.92776 1.22252 1.05020 0.94007 0.95285 1.23113 0.93353 1.01940 1.03551 1.22963 0.96022 1.00622 1.01646 1.22112 0.98172 0.91009 0.91947 1.74496 1.21593 1.24544 0.95241 1.74031 1.10586 1.07639 1.20654 1.25623 1.00686 0.98221 0.80868 1.19765 0.94968 0.92903 0.93722 0.90320 1.21693 0.97250 1.00021 0.99607 1.19574 0.94526 0.95913 0.93554 1.21018 0.97608 1.20494 1.16434 0.90546 1.24934 0.97866 0.94681 0.95523 1.69898 1.36375 1.25677 1.22037 0.86854 0.86169 0.77584 0.79204 1.20022 1.21448 1.19138 1.46483 1.37864 1.23324 1.08095 1.21779 0.97114 0.87665 0.94706 1.22199 1.00316 0.96425 1.04044 0.92455 0.92667 0.92650 0.92138 0.91421 0.89527 0.92637 0.90450 0.92883 0.86798 0.88716 0.88739 0.88601 0.88751 0.92127 0.94768 0.90151 0.96871 0.95552 0.92688 0.88957 0.88502 0.91842 0.90974 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.32 5.75 -26.73 -0.15 -1.47 16 3 C 0.06 0.72 4.83 -3.82 -0.02 0.70 16 4 N -0.46 -5.56 4.44 -174.51 -0.77 -6.33 16 5 C 0.10 1.04 5.17 -3.83 -0.02 1.02 16 6 C -0.15 -1.17 4.67 -90.62 -0.42 -1.59 16 7 C -0.18 -1.27 9.93 -26.70 -0.27 -1.53 16 8 C -0.17 -1.20 10.25 -26.69 -0.27 -1.48 16 9 C 0.32 5.11 5.68 -318.88 -1.81 3.30 16 10 N -0.31 -6.03 11.83 30.31 0.36 -5.68 16 11 N -0.29 -6.10 12.18 32.99 0.40 -5.70 16 12 C 0.21 4.06 6.58 -154.01 -1.01 3.05 16 13 C 0.01 0.15 2.71 -91.77 -0.25 -0.10 16 14 H 0.08 1.44 7.08 -51.93 -0.37 1.07 16 15 C -0.13 -2.38 8.98 37.16 0.33 -2.05 16 16 C 0.00 0.06 3.50 -27.88 -0.10 -0.03 16 17 C -0.52 -14.12 8.96 -34.44 -0.31 -14.43 16 18 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 21 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 22 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.27 -6.65 6.54 56.52 0.37 -6.29 16 25 N -0.46 -7.32 2.81 -114.09 -0.32 -7.64 16 26 C 0.11 1.31 6.50 -4.04 -0.03 1.29 16 27 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.84 6.84 -51.93 -0.36 0.49 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.79 6.64 -51.93 -0.34 0.45 16 34 H 0.06 0.74 7.67 -51.92 -0.40 0.34 16 35 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.05 0.62 7.85 -51.93 -0.41 0.21 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 45 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 46 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.09 1.02 7.47 -51.93 -0.39 0.63 16 49 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 50 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 412.39 15.07 6.21 6.21 Total: -1.00 -31.94 412.39 -11.32 -43.27 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -9.63 Total: -1.05 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.68 Total: -14.06 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.44 Total: -51.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.94 -11.32 -43.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263050939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.985 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds