Wall clock time and date at job start Sat Apr 11 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46861 * 2 1 4 4 N 1.46894 * 109.47147 * 184.69856 * 3 2 1 5 5 C 1.46901 * 110.99701 * 199.34845 * 4 3 2 6 6 C 1.52996 * 109.47271 * 66.04249 * 5 4 3 7 7 C 1.52998 * 117.49954 * 243.74607 * 6 5 4 8 8 C 1.53003 * 117.49872 * 175.08729 * 6 5 4 9 9 C 1.38574 * 111.00468 * 75.39116 * 4 3 2 10 10 N 1.31217 * 126.47110 * 57.56514 * 9 4 3 11 11 N 1.28529 * 109.85681 * 179.82301 * 10 9 4 12 12 C 1.30290 * 110.05634 * 0.44713 * 11 10 9 13 13 C 1.50706 * 126.34866 * 179.76248 * 12 11 10 14 14 H 1.08994 * 109.47116 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46793 * 59.96034 * 13 12 11 16 16 C 1.52999 * 109.46961 * 299.96195 * 13 12 11 17 17 C 1.50700 * 109.46823 * 184.99992 * 16 13 12 18 18 H 1.07997 * 120.00414 * 359.97438 * 17 16 13 19 19 C 1.37886 * 119.99919 * 180.02562 * 17 16 13 20 20 N 1.31509 * 119.99709 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99707 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47127 * 90.00588 * 21 19 17 23 23 H 1.48503 * 109.47025 * 210.00133 * 21 19 17 24 24 H 1.48497 * 109.47364 * 329.99926 * 21 19 17 25 25 N 1.36457 * 126.47272 * 237.87138 * 9 4 3 26 26 C 1.46496 * 127.13566 * 0.02562 * 25 9 4 27 27 C 1.52998 * 109.47077 * 95.37489 * 26 25 9 28 28 H 1.09000 * 109.46828 * 184.97010 * 1 2 3 29 29 H 1.08998 * 109.47428 * 304.97235 * 1 2 3 30 30 H 1.09003 * 109.47067 * 64.97667 * 1 2 3 31 31 H 1.08999 * 109.47446 * 240.00098 * 2 1 3 32 32 H 1.09000 * 109.46943 * 119.99324 * 2 1 3 33 33 H 1.08992 * 109.47329 * 64.68963 * 3 2 1 34 34 H 1.09007 * 109.46606 * 304.69420 * 3 2 1 35 35 H 1.09004 * 109.47050 * 186.03929 * 5 4 3 36 36 H 1.08998 * 109.47552 * 306.04043 * 5 4 3 37 37 H 1.09003 * 115.55302 * 29.41938 * 6 5 4 38 38 H 1.09003 * 117.49978 * 0.02562 * 7 6 5 39 39 H 1.09001 * 117.49980 * 145.01859 * 7 6 5 40 40 H 1.09003 * 117.49558 * 214.98182 * 8 6 5 41 41 H 1.09000 * 117.49833 * 359.97438 * 8 6 5 42 42 H 1.08994 * 109.47374 * 299.99945 * 15 13 12 43 43 H 1.08995 * 109.46969 * 60.00077 * 15 13 12 44 44 H 1.09003 * 109.46773 * 179.97438 * 15 13 12 45 45 H 1.09000 * 109.47165 * 304.99672 * 16 13 12 46 46 H 1.08997 * 109.47357 * 65.00258 * 16 13 12 47 47 H 0.97004 * 119.99381 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.47029 * 215.37320 * 26 25 9 49 49 H 1.08992 * 109.47147 * 335.37423 * 26 25 9 50 50 H 1.08998 * 109.47067 * 294.87233 * 27 26 25 51 51 H 1.09001 * 109.47279 * 54.86796 * 27 26 25 52 52 H 1.09004 * 109.47243 * 174.86923 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5045 1.4442 -0.1134 5 6 4.0657 2.7259 0.3341 6 6 3.8165 2.8958 1.8340 7 6 2.9187 4.0538 2.2743 8 6 4.4285 4.1202 2.5176 9 6 3.9027 1.1528 -1.4083 10 7 3.5684 1.8100 -2.4938 11 7 4.1198 1.2671 -3.5200 12 6 4.8251 0.2344 -3.1545 13 6 5.6190 -0.6711 -4.0606 14 1 6.1030 -1.4461 -3.4663 15 6 6.6826 0.1477 -4.7950 16 6 4.6818 -1.3213 -5.0802 17 6 5.4525 -2.3186 -5.9064 18 1 6.5055 -2.4729 -5.7228 19 6 4.8135 -3.0333 -6.8973 20 7 5.4862 -3.9032 -7.6186 21 14 2.9923 -2.7659 -7.2153 22 1 2.8186 -1.6899 -8.2239 23 1 2.3888 -4.0236 -7.7244 24 1 2.3216 -2.3718 -5.9504 25 7 4.7119 0.1247 -1.7962 26 6 5.3305 -0.8869 -0.9359 27 6 4.4525 -2.1396 -0.9092 28 1 -0.3633 -1.0238 0.0890 29 1 -0.3634 0.5890 0.8421 30 1 -0.3633 0.4347 -0.9312 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.7469 1.9316 0.9289 34 1 1.6095 1.9800 -0.8450 35 1 5.1383 2.7405 0.1400 36 1 3.5873 3.5413 -0.2083 37 1 3.7645 1.9716 2.4097 38 1 2.5052 4.6944 1.4953 39 1 2.2762 3.8916 3.1397 40 1 4.7787 4.0016 3.5430 41 1 5.0090 4.8045 1.8988 42 1 6.1984 0.9226 -5.3892 43 1 7.3502 0.6109 -4.0685 44 1 7.2571 -0.5073 -5.4500 45 1 3.8729 -1.8310 -4.5569 46 1 4.2657 -0.5536 -5.7325 47 1 5.0365 -4.4063 -8.3155 48 1 6.3159 -1.1421 -1.3257 49 1 5.4308 -0.4920 0.0750 50 1 3.4992 -1.9051 -0.4357 51 1 4.2770 -2.4822 -1.9290 52 1 4.9558 -2.9241 -0.3439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263050939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:42 Heat of formation + Delta-G solvation = 74.135012 kcal Electronic energy + Delta-G solvation = -28495.312532 eV Core-core repulsion = 24916.996004 eV Total energy + Delta-G solvation = -3578.316529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.06314 -39.74355 -37.50987 -37.11598 -36.37852 -34.45540 -34.10492 -31.48462 -30.54902 -29.29065 -28.25724 -26.27008 -25.70687 -24.86784 -23.61431 -23.24693 -22.53688 -21.60474 -21.29260 -20.40088 -19.09733 -18.31493 -17.59192 -17.27658 -16.56708 -16.33818 -16.01296 -15.82187 -15.28510 -15.27808 -15.17268 -14.90874 -14.66359 -14.51776 -14.06956 -13.95843 -13.78991 -13.29978 -13.25246 -13.02646 -12.98215 -12.78179 -12.70324 -12.49109 -12.39357 -12.36087 -12.30063 -12.01836 -11.94385 -11.88533 -11.74164 -11.71170 -11.51166 -11.27999 -11.26424 -11.07200 -10.88269 -10.76941 -10.03924 -9.85301 -8.29486 -6.30532 0.70746 1.23446 1.30710 1.33733 1.43893 1.76679 2.33331 2.56365 2.90978 3.06094 3.36612 3.62680 3.71867 3.83684 3.91558 3.97712 4.04798 4.05513 4.09542 4.19325 4.31474 4.32663 4.33989 4.36715 4.48188 4.52722 4.55688 4.61462 4.63477 4.64645 4.75931 4.82294 4.84229 4.86669 4.97990 5.05769 5.06877 5.08429 5.14022 5.16040 5.18690 5.25548 5.27431 5.28986 5.31561 5.34685 5.50227 5.53439 5.68746 5.69718 6.23435 6.26796 6.74999 7.33236 7.71069 8.85965 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.003475 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.807170 B = 8055.247894 C = 8672.734710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.066 3.934 4 N -0.448 5.448 5 C 0.101 3.899 6 C -0.149 4.149 7 C -0.178 4.178 8 C -0.170 4.170 9 C 0.345 3.655 10 N -0.351 5.351 11 N -0.326 5.326 12 C 0.202 3.798 13 C 0.016 3.984 14 H 0.094 0.906 15 C -0.120 4.120 16 C 0.012 3.988 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.020 3.980 20 N -0.941 5.941 21 Si 0.929 3.071 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 N -0.460 5.460 26 C 0.102 3.898 27 C -0.166 4.166 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.004 0.996 46 H 0.010 0.990 47 H 0.266 0.734 48 H 0.104 0.896 49 H 0.124 0.876 50 H 0.063 0.937 51 H 0.038 0.962 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 11.036 26.419 28.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.060 4.060 4 N -0.174 5.174 5 C -0.026 4.026 6 C -0.168 4.168 7 C -0.215 4.215 8 C -0.207 4.207 9 C -0.012 4.012 10 N -0.195 5.195 11 N -0.166 5.166 12 C -0.067 4.067 13 C -0.005 4.005 14 H 0.112 0.888 15 C -0.178 4.178 16 C -0.027 4.027 17 C -0.550 4.550 18 H 0.075 0.925 19 C -0.178 4.178 20 N -0.581 5.581 21 Si 0.754 3.246 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.190 1.190 25 N -0.152 5.152 26 C -0.019 4.019 27 C -0.224 4.224 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.023 0.977 46 H 0.029 0.971 47 H 0.075 0.925 48 H 0.122 0.878 49 H 0.142 0.858 50 H 0.082 0.918 51 H 0.057 0.943 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.702 11.579 25.734 28.608 hybrid contribution -0.484 -0.525 -0.770 1.050 sum -5.187 11.054 24.964 27.790 Atomic orbital electron populations 1.21690 0.94208 1.02542 1.01967 1.21495 0.96617 0.95622 1.01513 1.22353 0.82836 0.98154 1.02670 1.58902 1.12350 1.34075 1.12083 1.21698 0.99152 0.87085 0.94680 1.22117 1.06554 0.94929 0.93170 1.23178 0.93685 1.00863 1.03792 1.23044 0.96022 0.99473 1.02176 1.22492 0.96240 0.89844 0.92636 1.74417 1.23066 1.26005 0.95963 1.73926 1.11610 1.08809 1.22217 1.25230 1.01118 0.98097 0.82265 1.19534 0.94340 0.93445 0.93197 0.88822 1.21596 0.97125 0.99268 0.99842 1.19386 0.94682 0.94710 0.93880 1.21254 0.97027 1.20440 1.16279 0.92461 1.25653 1.01683 0.94744 0.95714 1.70002 1.38063 1.27017 1.23059 0.85982 0.81759 0.77781 0.79040 1.19771 1.20437 1.18963 1.46643 1.37478 1.23735 1.07318 1.22171 0.97362 0.86959 0.95376 1.22162 1.00770 0.97044 1.02383 0.91884 0.90405 0.94274 0.95579 0.89574 0.86647 0.95124 0.91215 0.94267 0.85906 0.89328 0.87172 0.87099 0.89128 0.93432 0.91939 0.91474 0.97746 0.97123 0.92467 0.87755 0.85836 0.91819 0.94291 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.11 -2.32 5.75 30.60 0.18 -2.15 16 3 C 0.07 1.38 4.83 86.31 0.42 1.80 16 4 N -0.45 -10.10 4.44 -706.04 -3.13 -13.24 16 5 C 0.10 1.97 5.17 86.30 0.45 2.42 16 6 C -0.15 -1.94 4.67 -10.79 -0.05 -1.99 16 7 C -0.18 -1.95 9.93 30.62 0.30 -1.65 16 8 C -0.17 -1.85 10.25 30.62 0.31 -1.53 16 9 C 0.35 10.68 5.68 260.11 1.48 12.16 16 10 N -0.35 -13.65 11.83 -58.01 -0.69 -14.34 16 11 N -0.33 -14.02 12.18 -49.53 -0.60 -14.62 16 12 C 0.20 7.70 6.58 137.64 0.91 8.60 16 13 C 0.02 0.63 2.71 -11.54 -0.03 0.59 16 14 H 0.09 3.38 7.08 -2.39 -0.02 3.36 16 15 C -0.12 -4.50 8.98 71.98 0.65 -3.85 16 16 C 0.01 0.58 3.50 29.85 0.10 0.68 16 17 C -0.51 -28.49 8.96 25.60 0.23 -28.26 16 18 H 0.06 3.35 7.30 -2.91 -0.02 3.33 16 19 C 0.02 1.16 5.47 84.66 0.46 1.62 16 20 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 21 Si 0.93 46.15 27.47 68.60 1.88 48.03 16 22 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.27 -12.98 6.54 99.48 0.65 -12.33 16 25 N -0.46 -14.08 2.81 -514.87 -1.45 -15.53 16 26 C 0.10 2.20 6.50 86.38 0.56 2.77 16 27 C -0.17 -3.56 10.24 71.98 0.74 -2.83 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.03 0.71 6.84 -2.39 -0.02 0.69 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.12 1.75 6.64 -2.39 -0.02 1.74 16 34 H 0.03 0.81 7.67 -2.38 -0.02 0.79 16 35 H 0.07 1.47 8.05 -2.38 -0.02 1.45 16 36 H 0.04 0.88 7.85 -2.39 -0.02 0.87 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.10 8.03 -2.39 -0.02 1.08 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 2.66 6.95 -2.39 -0.02 2.64 16 45 H 0.00 0.21 7.20 -2.39 -0.02 0.20 16 46 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 47 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.10 2.03 7.47 -2.39 -0.02 2.01 16 49 H 0.12 2.04 8.11 -2.39 -0.02 2.02 16 50 H 0.06 1.36 7.02 -2.39 -0.02 1.34 16 51 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.15 412.39 4.54 -66.61 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.81 Total: 14.00 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 7.41 Total: -13.45 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -5.57 Total: -115.19 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.03 kcal Total: -71.15 4.54 -66.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263050939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.748 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds