Wall clock time and date at job start Sat Apr 11 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 N 1.46899 * 109.47279 * 176.14200 * 3 2 1 5 5 C 1.46898 * 111.00286 * 290.11831 * 4 3 2 6 6 C 1.53001 * 109.46874 * 287.79878 * 5 4 3 7 7 C 1.53001 * 117.49644 * 244.58052 * 6 5 4 8 8 C 1.53003 * 117.49707 * 175.92264 * 6 5 4 9 9 C 1.38585 * 110.99758 * 54.07362 * 4 3 2 10 10 N 1.31215 * 126.47174 * 239.81523 * 9 4 3 11 11 N 1.28522 * 109.86163 * 179.97438 * 10 9 4 12 12 C 1.30294 * 110.05692 * 0.02562 * 11 10 9 13 13 C 1.50695 * 126.35301 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47461 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46779 * 300.02306 * 13 12 11 16 16 C 1.52996 * 109.47158 * 60.01866 * 13 12 11 17 17 C 1.50705 * 109.47034 * 175.00469 * 16 13 12 18 18 H 1.07995 * 119.99921 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99964 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00089 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47195 * 89.99646 * 21 19 17 23 23 H 1.48503 * 109.47204 * 210.00088 * 21 19 17 24 24 H 1.48513 * 109.46976 * 329.99796 * 21 19 17 25 25 N 1.36456 * 126.47639 * 60.12745 * 9 4 3 26 26 C 1.46499 * 127.13372 * 0.02562 * 25 9 4 27 27 C 1.53000 * 109.47127 * 263.87011 * 26 25 9 28 28 H 1.08998 * 109.47254 * 299.99512 * 1 2 3 29 29 H 1.08995 * 109.47732 * 60.00408 * 1 2 3 30 30 H 1.09007 * 109.46889 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47610 * 239.99796 * 2 1 3 32 32 H 1.09003 * 109.47156 * 119.99845 * 2 1 3 33 33 H 1.09004 * 109.47227 * 56.14112 * 3 2 1 34 34 H 1.09000 * 109.47072 * 296.14341 * 3 2 1 35 35 H 1.09004 * 109.47107 * 47.79700 * 5 4 3 36 36 H 1.08997 * 109.47545 * 167.79754 * 5 4 3 37 37 H 1.09001 * 115.55006 * 30.25619 * 6 5 4 38 38 H 1.08996 * 117.49854 * 0.02562 * 7 6 5 39 39 H 1.08998 * 117.49552 * 145.02407 * 7 6 5 40 40 H 1.08998 * 117.50179 * 214.98469 * 8 6 5 41 41 H 1.09007 * 117.49643 * 0.02562 * 8 6 5 42 42 H 1.09002 * 109.47558 * 59.99739 * 15 13 12 43 43 H 1.09002 * 109.47159 * 180.02562 * 15 13 12 44 44 H 1.09008 * 109.46863 * 299.99786 * 15 13 12 45 45 H 1.08994 * 109.47547 * 295.00158 * 16 13 12 46 46 H 1.09000 * 109.47524 * 55.00432 * 16 13 12 47 47 H 0.96998 * 120.00114 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.47159 * 23.87184 * 26 25 9 49 49 H 1.09004 * 109.46983 * 143.86879 * 26 25 9 50 50 H 1.08992 * 109.47156 * 52.63982 * 27 26 25 51 51 H 1.08999 * 109.46682 * 172.64459 * 27 26 25 52 52 H 1.08999 * 109.46795 * 292.63504 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5060 1.4437 0.0932 5 6 3.9494 1.0014 1.4220 6 6 3.6539 2.0964 2.4488 7 6 4.8483 2.7591 3.1383 8 6 3.9564 1.7886 3.9167 9 6 4.0675 0.6616 -0.9036 10 7 4.8337 -0.3896 -0.7316 11 7 5.1756 -0.8722 -1.8727 12 6 4.6526 -0.1631 -2.8325 13 6 4.8152 -0.4036 -4.3113 14 1 4.2610 0.3537 -4.8656 15 6 6.2977 -0.3234 -4.6810 16 6 4.2758 -1.7910 -4.6647 17 6 4.3252 -1.9837 -6.1585 18 1 4.7030 -1.1952 -6.7924 19 6 3.8870 -3.1661 -6.7160 20 7 3.4264 -4.1261 -5.9441 21 14 3.9474 -3.4046 -8.5677 22 1 5.2544 -3.9983 -8.9479 23 1 2.8503 -4.3140 -8.9858 24 1 3.7856 -2.0911 -9.2415 25 7 3.9329 0.8427 -2.2494 26 6 3.1724 1.8947 -2.9285 27 6 1.7858 1.3640 -3.2979 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6212 1.9760 0.8534 34 1 1.7341 1.9360 -0.9225 35 1 3.4172 0.0911 1.6982 36 1 5.0210 0.8033 1.4001 37 1 2.7867 2.7208 2.2339 38 1 5.8444 2.4152 2.8600 39 1 4.7666 3.8194 3.3773 40 1 3.2885 2.2107 4.6675 41 1 4.3663 0.8060 4.1508 42 1 6.8520 -1.0807 -4.1266 43 1 6.4153 -0.4969 -5.7507 44 1 6.6819 0.6652 -4.4292 45 1 4.8865 -2.5526 -4.1798 46 1 3.2452 -1.8787 -4.3209 47 1 3.1185 -4.9582 -6.3362 48 1 3.0680 2.7534 -2.2652 49 1 3.6989 2.1969 -3.8338 50 1 1.3105 0.9419 -2.4125 51 1 1.1753 2.1804 -3.6838 52 1 1.8838 0.5917 -4.0609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263050940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:44 Heat of formation + Delta-G solvation = 76.133451 kcal Electronic energy + Delta-G solvation = -28665.803915 eV Core-core repulsion = 25087.574045 eV Total energy + Delta-G solvation = -3578.229870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.04470 -39.94706 -37.61829 -37.21796 -36.23841 -34.35252 -33.96211 -31.48292 -30.28564 -28.85688 -28.39795 -26.39313 -25.75437 -24.93794 -23.66645 -23.20458 -23.09441 -21.72948 -20.90878 -20.38500 -18.65879 -18.16504 -17.54041 -17.36921 -16.53943 -16.48476 -16.29160 -15.92370 -15.52223 -15.14339 -14.93150 -14.83022 -14.63518 -14.32032 -14.05373 -13.69716 -13.61436 -13.36703 -13.21748 -12.99880 -12.77777 -12.75616 -12.62282 -12.49942 -12.40950 -12.35419 -12.32227 -12.26472 -12.11665 -11.92775 -11.81436 -11.60759 -11.31205 -11.24843 -11.18648 -11.06219 -10.94534 -10.56898 -10.50150 -9.21467 -8.16308 -6.28108 0.82476 1.28988 1.43164 1.44988 1.55195 1.87398 2.43315 2.56759 2.98725 3.17640 3.46508 3.63690 3.67824 3.77129 3.80945 3.92414 3.98493 4.00863 4.09837 4.18656 4.20128 4.28048 4.36839 4.38911 4.42793 4.51370 4.55810 4.57553 4.61558 4.66793 4.76932 4.79824 4.83678 4.86876 5.00202 5.05380 5.07268 5.07690 5.10966 5.15553 5.20513 5.30152 5.31675 5.34493 5.37277 5.46444 5.53879 5.70052 5.70686 5.83751 6.19590 6.25021 6.87696 7.41068 7.84423 8.96131 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.003239 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.392773 B = 8641.950125 C = 9116.331131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C 0.046 3.954 4 N -0.438 5.438 5 C 0.100 3.900 6 C -0.149 4.149 7 C -0.177 4.177 8 C -0.169 4.169 9 C 0.360 3.640 10 N -0.367 5.367 11 N -0.329 5.329 12 C 0.199 3.801 13 C 0.011 3.989 14 H 0.093 0.907 15 C -0.118 4.118 16 C 0.056 3.944 17 C -0.527 4.527 18 H 0.076 0.924 19 C -0.002 4.002 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.254 1.254 25 N -0.475 5.475 26 C 0.096 3.904 27 C -0.175 4.175 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.061 0.939 45 H -0.014 1.014 46 H -0.023 1.023 47 H 0.261 0.739 48 H 0.124 0.876 49 H 0.108 0.892 50 H 0.061 0.939 51 H 0.115 0.885 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 20.089 14.327 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.194 4.194 3 C -0.080 4.080 4 N -0.160 5.160 5 C -0.026 4.026 6 C -0.167 4.167 7 C -0.214 4.214 8 C -0.207 4.207 9 C 0.003 3.997 10 N -0.211 5.211 11 N -0.167 5.167 12 C -0.071 4.071 13 C -0.010 4.010 14 H 0.111 0.889 15 C -0.176 4.176 16 C 0.017 3.983 17 C -0.565 4.565 18 H 0.094 0.906 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.178 1.178 25 N -0.170 5.170 26 C -0.025 4.025 27 C -0.233 4.233 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.004 0.996 46 H -0.004 1.004 47 H 0.070 0.930 48 H 0.142 0.858 49 H 0.126 0.874 50 H 0.080 0.920 51 H 0.133 0.867 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.223 19.379 14.978 25.043 hybrid contribution -0.735 -1.006 -1.338 1.828 sum -5.959 18.373 13.640 23.646 Atomic orbital electron populations 1.21643 0.92745 1.02064 1.03340 1.22103 0.98863 0.98020 1.00429 1.22845 0.82716 0.96255 1.06147 1.59031 1.09570 1.46209 1.01239 1.21609 1.00580 0.96266 0.84179 1.22161 1.01397 1.00680 0.92493 1.23080 0.94967 0.99359 1.04016 1.23067 1.03444 1.00773 0.93379 1.22704 1.00056 0.93387 0.83574 1.74433 1.19528 1.08578 1.18554 1.73867 1.23570 1.24295 0.94976 1.25209 0.95339 0.87944 0.98570 1.19698 0.99059 0.99826 0.82431 0.88877 1.21595 0.92991 1.00743 1.02320 1.18788 0.93236 0.90406 0.95826 1.21570 1.41520 1.01032 0.92354 0.90571 1.26011 0.94862 0.95768 1.03295 1.70158 1.43835 1.06389 1.37373 0.85439 0.77618 0.78677 0.79265 1.20089 1.21374 1.17768 1.46438 1.40078 1.25238 1.05217 1.22265 0.92436 0.88342 0.99409 1.22343 0.95530 1.03219 1.02212 0.89912 0.91753 0.93539 0.96113 0.92333 0.85694 0.88423 0.93255 0.91547 0.85623 0.89954 0.87289 0.86672 0.89299 0.94289 0.90696 0.92011 0.99598 1.00446 0.93021 0.85757 0.87407 0.92019 0.86693 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.16 -3.67 4.60 30.59 0.14 -3.53 16 3 C 0.05 0.86 4.80 86.30 0.41 1.27 16 4 N -0.44 -10.66 4.67 -706.02 -3.30 -13.95 16 5 C 0.10 2.35 4.70 86.30 0.41 2.75 16 6 C -0.15 -2.36 5.66 -10.79 -0.06 -2.42 16 7 C -0.18 -2.66 10.18 30.62 0.31 -2.35 16 8 C -0.17 -2.30 10.25 30.62 0.31 -1.98 16 9 C 0.36 12.06 5.50 260.11 1.43 13.49 16 10 N -0.37 -15.53 11.07 -58.00 -0.64 -16.17 16 11 N -0.33 -15.59 12.18 -49.54 -0.60 -16.19 16 12 C 0.20 8.26 6.58 137.64 0.91 9.17 16 13 C 0.01 0.45 2.71 -11.54 -0.03 0.42 16 14 H 0.09 3.45 7.11 -2.39 -0.02 3.44 16 15 C -0.12 -4.57 8.98 71.98 0.65 -3.93 16 16 C 0.06 3.02 4.43 29.85 0.13 3.15 16 17 C -0.53 -29.01 8.41 25.60 0.22 -28.80 16 18 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 19 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 20 N -0.94 -58.36 13.29 21.45 0.28 -58.07 16 21 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 25 N -0.48 -15.54 2.81 -514.85 -1.45 -16.98 16 26 C 0.10 2.13 5.58 86.38 0.48 2.61 16 27 C -0.18 -3.76 9.67 71.98 0.70 -3.06 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.04 7.78 -2.39 -0.02 1.03 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 31 H 0.02 0.67 6.75 -2.39 -0.02 0.66 16 32 H 0.06 1.49 6.35 -2.39 -0.02 1.48 16 33 H 0.13 1.53 6.53 -2.39 -0.02 1.51 16 34 H 0.10 1.59 4.36 -2.39 -0.01 1.58 16 35 H 0.05 1.25 6.18 -2.38 -0.01 1.23 16 36 H 0.07 1.90 7.29 -2.39 -0.02 1.88 16 37 H 0.13 1.55 6.80 -2.39 -0.02 1.53 16 38 H 0.08 1.45 8.03 -2.39 -0.02 1.44 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.84 6.95 -2.39 -0.02 2.82 16 44 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 45 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16 46 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 47 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 48 H 0.12 2.01 7.36 -2.39 -0.02 2.00 16 49 H 0.11 2.14 7.52 -2.39 -0.02 2.12 16 50 H 0.06 1.37 4.77 -2.39 -0.01 1.36 16 51 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.20 400.99 4.39 -71.81 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.89 Total: 18.52 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 7.18 Total: -14.64 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -5.71 Total: -121.37 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -76.20 4.39 -71.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263050940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.939 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds