Wall clock time and date at job start Sat Apr 11 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47531 * 240.00517 * 3 2 1 5 5 H 1.48510 * 109.46842 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47066 * 120.00231 * 3 2 1 7 7 C 1.37873 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47120 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47149 * 180.02562 * 11 10 9 13 13 O 1.42096 * 109.46949 * 296.38403 * 12 11 10 14 14 C 1.81408 * 103.00163 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47038 * 179.97438 * 14 12 11 16 16 N 1.31878 * 119.60797 * 270.02010 * 15 14 12 17 17 C 1.31843 * 121.74961 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.77109 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 120.42357 * 180.02562 * 18 17 16 20 20 C 1.38718 * 119.15021 * 359.97438 * 18 17 16 21 21 C 1.38312 * 119.61560 * 90.00277 * 15 14 12 22 22 Cl 1.73597 * 120.42095 * 0.03859 * 21 15 14 23 23 H 0.96996 * 119.99798 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47190 * 60.00087 * 9 7 2 25 25 H 1.09005 * 109.47454 * 300.00386 * 9 7 2 26 26 H 1.09002 * 109.47055 * 60.00344 * 10 9 7 27 27 H 1.09000 * 109.47118 * 300.00014 * 10 9 7 28 28 H 1.08991 * 109.47322 * 59.99533 * 11 10 9 29 29 H 1.09000 * 109.46824 * 299.99811 * 11 10 9 30 30 H 1.08999 * 109.46829 * 59.99501 * 14 12 11 31 31 H 1.09000 * 109.46709 * 300.00266 * 14 12 11 32 32 H 1.08000 * 119.61713 * 180.27494 * 17 16 15 33 33 H 1.07998 * 120.79678 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 16 2.6593 -6.3658 -0.0004 13 8 3.4204 -6.3388 -1.2000 14 6 1.5810 -7.8247 -0.0005 15 6 2.4250 -9.0731 -0.0005 16 7 2.7903 -9.6126 -1.1471 17 6 3.5287 -10.7038 -1.1964 18 6 3.9494 -11.3269 -0.0349 19 17 4.9219 -12.7629 -0.1103 20 6 3.5850 -10.7888 1.1907 21 6 2.8078 -9.6394 1.2019 22 17 2.3212 -8.9218 2.7058 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8541 -5.0446 -0.8913 29 1 0.8536 -5.0451 0.8886 30 1 0.9522 -7.8115 -0.8907 31 1 0.9515 -7.8111 0.8892 32 1 3.8118 -11.1138 -2.1546 33 1 3.8984 -11.2536 2.1138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122174776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:26:39 Heat of formation + Delta-G solvation = -30.575302 kcal Electronic energy + Delta-G solvation = -18973.924240 eV Core-core repulsion = 15598.752526 eV Total energy + Delta-G solvation = -3375.171714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 321.010 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86828 -37.32723 -37.03792 -35.54569 -34.45845 -33.37462 -32.62184 -32.04222 -28.26552 -27.45483 -24.34095 -23.61810 -22.76535 -20.32096 -17.88828 -17.69119 -17.34511 -16.50457 -16.30183 -15.74972 -14.96565 -14.85043 -14.66715 -14.33755 -14.12573 -13.84776 -13.37968 -13.01839 -12.80283 -12.42600 -12.29988 -12.21673 -12.00946 -11.83819 -11.45300 -11.34911 -10.86941 -10.82081 -10.73270 -10.35456 -10.13207 -10.11160 -9.81255 -9.53997 -9.19289 -8.94323 -8.36211 -8.07056 -6.01322 -4.04077 0.16749 0.45095 1.27058 1.57891 1.67593 2.68101 3.06006 3.33665 3.37711 3.40737 3.64914 3.82561 4.07915 4.11476 4.42232 4.45540 4.54391 4.97367 5.08751 5.32693 5.34266 5.42478 5.43841 5.55584 5.79273 6.15285 6.47711 6.66466 7.01606 7.27045 7.64079 7.76502 7.97731 8.39379 9.02516 9.60162 11.09885 Molecular weight = 321.01amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.002388 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.889651 B =11724.195040 C =12099.937768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.094 4.094 11 C -0.431 4.431 12 S 1.237 4.763 13 O -0.829 6.829 14 C -0.421 4.421 15 C 0.177 3.823 16 N -0.446 5.446 17 C 0.129 3.871 18 C -0.089 4.089 19 Cl -0.043 7.043 20 C -0.052 4.052 21 C -0.080 4.080 22 Cl -0.029 7.029 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -26.897 6.549 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.571 4.571 12 S 1.435 4.565 13 O -0.824 6.824 14 C -0.554 4.554 15 C 0.038 3.962 16 N -0.156 5.156 17 C -0.030 4.030 18 C -0.119 4.119 19 Cl -0.015 7.015 20 C -0.079 4.079 21 C -0.111 4.111 22 Cl 0.000 7.000 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.157 0.843 32 H 0.191 0.809 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.462 -26.450 5.868 27.853 hybrid contribution -0.741 0.370 -0.948 1.259 sum 5.720 -26.081 4.920 27.150 Atomic orbital electron populations 1.69952 1.06074 1.26768 1.50747 1.25025 0.94870 0.99299 0.95251 0.86640 0.79580 0.82992 0.78702 1.20228 1.21288 1.20114 1.21230 0.93124 0.91017 1.50802 0.92574 1.19092 0.93765 0.90803 0.97424 1.21337 0.99035 0.91724 1.01193 1.27669 1.11489 1.10360 1.07535 1.71028 0.87762 0.85363 1.12320 1.93138 1.55192 1.83331 1.50713 1.26993 1.10291 1.08404 1.09707 1.20426 0.94146 0.94790 0.86799 1.67858 1.11081 1.09337 1.27303 1.22978 0.91990 0.90127 0.97916 1.22017 1.01056 0.93482 0.95360 1.98402 1.68792 1.35631 1.98642 1.21436 0.94651 0.93363 0.98435 1.21753 1.02897 0.97289 0.89160 1.98410 1.89978 1.82357 1.29287 0.92919 0.96662 0.96178 0.92044 0.92725 0.89651 0.86525 0.86678 0.84321 0.80942 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.90 5.16 -26.73 -0.14 -2.04 16 11 C -0.43 -6.73 5.92 37.16 0.22 -6.51 16 12 S 1.24 16.53 13.14 -107.50 -1.41 15.12 16 13 O -0.83 -16.22 18.14 -35.23 -0.64 -16.86 16 14 C -0.42 -4.62 5.82 36.00 0.21 -4.41 16 15 C 0.18 2.02 6.04 -82.55 -0.50 1.52 16 16 N -0.45 -5.65 10.27 -9.41 -0.10 -5.74 16 17 C 0.13 1.26 10.99 -17.50 -0.19 1.06 16 18 C -0.09 -0.74 6.34 -39.36 -0.25 -0.99 16 19 Cl -0.04 -0.30 28.99 -51.86 -1.50 -1.81 16 20 C -0.05 -0.40 9.79 -39.21 -0.38 -0.78 16 21 C -0.08 -0.73 6.33 -39.36 -0.25 -0.97 16 22 Cl -0.03 -0.22 27.32 -51.86 -1.42 -1.64 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.12 1.49 8.14 -51.92 -0.42 1.06 16 30 H 0.11 1.36 8.14 -51.92 -0.42 0.93 16 31 H 0.14 1.11 6.89 -51.92 -0.36 0.75 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -35.86 334.00 -9.86 -45.71 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -3.70 Total: -4.12 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -1.83 Total: -26.20 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.64 Total: -31.92 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.64 Total: -16.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 16.53 SS G_CDS: -1.41 Total: 15.12 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -2.92 Total: -3.44 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.86 -9.86 -45.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122174776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.138 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds