Wall clock time and date at job start Sat Apr 11 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47531 * 240.00517 * 3 2 1 5 5 H 1.48510 * 109.46842 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47066 * 120.00231 * 3 2 1 7 7 C 1.37873 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47120 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47149 * 180.02562 * 11 10 9 13 13 O 1.42096 * 109.46949 * 296.38403 * 12 11 10 14 14 C 1.81408 * 103.00163 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47038 * 179.97438 * 14 12 11 16 16 N 1.31878 * 119.60797 * 270.02010 * 15 14 12 17 17 C 1.31843 * 121.74961 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.77109 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 120.42357 * 180.02562 * 18 17 16 20 20 C 1.38718 * 119.15021 * 359.97438 * 18 17 16 21 21 C 1.38312 * 119.61560 * 90.00277 * 15 14 12 22 22 Cl 1.73597 * 120.42095 * 0.03859 * 21 15 14 23 23 H 0.96996 * 119.99798 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47190 * 60.00087 * 9 7 2 25 25 H 1.09005 * 109.47454 * 300.00386 * 9 7 2 26 26 H 1.09002 * 109.47055 * 60.00344 * 10 9 7 27 27 H 1.09000 * 109.47118 * 300.00014 * 10 9 7 28 28 H 1.08991 * 109.47322 * 59.99533 * 11 10 9 29 29 H 1.09000 * 109.46824 * 299.99811 * 11 10 9 30 30 H 1.08999 * 109.46829 * 59.99501 * 14 12 11 31 31 H 1.09000 * 109.46709 * 300.00266 * 14 12 11 32 32 H 1.08000 * 119.61713 * 180.27494 * 17 16 15 33 33 H 1.07998 * 120.79678 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 16 2.6593 -6.3658 -0.0004 13 8 3.4204 -6.3388 -1.2000 14 6 1.5810 -7.8247 -0.0005 15 6 2.4250 -9.0731 -0.0005 16 7 2.7903 -9.6126 -1.1471 17 6 3.5287 -10.7038 -1.1964 18 6 3.9494 -11.3269 -0.0349 19 17 4.9219 -12.7629 -0.1103 20 6 3.5850 -10.7888 1.1907 21 6 2.8078 -9.6394 1.2019 22 17 2.3212 -8.9218 2.7058 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8541 -5.0446 -0.8913 29 1 0.8536 -5.0451 0.8886 30 1 0.9522 -7.8115 -0.8907 31 1 0.9515 -7.8111 0.8892 32 1 3.8118 -11.1138 -2.1546 33 1 3.8984 -11.2536 2.1138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122174776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:26:39 Heat of formation + Delta-G solvation = -54.519171 kcal Electronic energy + Delta-G solvation = -18974.962524 eV Core-core repulsion = 15598.752526 eV Total energy + Delta-G solvation = -3376.209998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 321.010 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.59832 -37.95562 -37.68110 -36.90708 -36.31440 -34.12750 -34.02478 -33.36274 -29.54236 -28.88376 -25.44265 -25.03527 -23.68398 -22.06024 -18.84988 -18.51897 -18.40247 -18.20139 -17.19728 -16.89291 -16.47110 -16.27917 -15.78754 -15.47901 -15.06784 -14.87645 -14.43257 -14.24153 -13.94092 -13.69574 -13.52436 -13.42600 -13.05180 -12.98398 -12.68908 -12.59959 -12.52205 -12.45211 -11.99943 -11.89215 -11.60808 -11.32934 -11.06096 -10.84172 -10.78128 -10.55354 -9.94875 -9.25234 -8.20506 -6.31793 -0.59551 -0.22987 0.51734 0.62093 1.01721 1.40268 1.43400 1.51215 1.57956 2.30669 2.41127 2.68168 2.94776 3.12427 3.30989 3.50099 3.69223 3.87078 4.03020 4.14809 4.20541 4.35021 4.61181 4.62931 4.68371 4.84284 5.05932 5.13209 5.18010 5.49780 5.70086 5.83659 6.23408 6.52932 6.84607 7.37404 8.90814 Molecular weight = 321.01amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.002388 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.889651 B =11724.195040 C =12099.937768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.089 4.089 11 C -0.436 4.436 12 S 1.292 4.708 13 O -0.895 6.895 14 C -0.411 4.411 15 C 0.151 3.849 16 N -0.485 5.485 17 C 0.116 3.884 18 C -0.083 4.083 19 Cl -0.028 7.028 20 C -0.046 4.046 21 C -0.076 4.076 22 Cl -0.013 7.013 23 H 0.264 0.736 24 H -0.019 1.019 25 H 0.011 0.989 26 H 0.086 0.914 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -28.183 8.403 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.128 4.128 11 C -0.574 4.574 12 S 1.492 4.508 13 O -0.891 6.891 14 C -0.547 4.547 15 C 0.012 3.988 16 N -0.195 5.195 17 C -0.042 4.042 18 C -0.112 4.112 19 Cl 0.001 6.999 20 C -0.073 4.073 21 C -0.106 4.106 22 Cl 0.017 6.983 23 H 0.073 0.927 24 H 0.000 1.000 25 H 0.029 0.971 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.125 0.875 31 H 0.190 0.810 32 H 0.204 0.796 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.412 -27.709 7.724 29.705 hybrid contribution -1.062 0.566 -1.489 1.915 sum 6.350 -27.143 6.234 28.565 Atomic orbital electron populations 1.70080 1.07729 1.27874 1.51567 1.25976 0.95814 1.03341 0.94680 0.85522 0.78330 0.78104 0.79248 1.19794 1.20731 1.18501 1.21718 0.93667 0.92519 1.50756 0.92168 1.19016 0.94274 0.92511 0.95245 1.21133 0.98094 0.92252 1.01298 1.27667 1.11897 1.09326 1.08477 1.70202 0.86190 0.84561 1.09804 1.93025 1.58327 1.84696 1.53005 1.26852 1.09868 1.06886 1.11051 1.20440 0.95426 0.95338 0.87584 1.67773 1.12439 1.10782 1.28529 1.23246 0.91904 0.89768 0.99290 1.22050 1.00409 0.93592 0.95198 1.98413 1.68253 1.34640 1.98625 1.21779 0.93519 0.92643 0.99333 1.21739 1.02449 0.97409 0.89038 1.98419 1.89798 1.82155 1.27976 0.92718 1.00031 0.97086 0.89556 0.95007 0.91217 0.83185 0.87513 0.81010 0.79562 0.79388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.09 -3.66 5.16 30.60 0.16 -3.50 16 11 C -0.44 -13.50 5.92 71.98 0.43 -13.07 16 12 S 1.29 33.80 13.14 -56.49 -0.74 33.06 16 13 O -0.90 -35.79 18.14 -148.98 -2.70 -38.49 16 14 C -0.41 -8.52 5.82 71.24 0.41 -8.10 16 15 C 0.15 3.25 6.04 42.57 0.26 3.51 16 16 N -0.49 -12.09 10.27 -183.70 -1.89 -13.97 16 17 C 0.12 2.17 10.99 84.72 0.93 3.10 16 18 C -0.08 -1.20 6.34 22.41 0.14 -1.06 16 19 Cl -0.03 -0.33 28.99 -2.72 -0.08 -0.41 16 20 C -0.05 -0.59 9.79 22.51 0.22 -0.37 16 21 C -0.08 -1.19 6.33 22.41 0.14 -1.05 16 22 Cl -0.01 -0.15 27.32 -2.72 -0.07 -0.23 16 23 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 24 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 25 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 30 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.17 2.30 6.89 -2.39 -0.02 2.28 16 32 H 0.19 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -79.72 334.00 1.49 -78.23 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.13 Total: 1.75 kcal Atomic # 6 Polarization: -53.41 SS G_CDS: 3.54 Total: -49.87 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.60 Total: -70.61 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -2.70 Total: -38.49 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -0.74 Total: 33.06 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.15 Total: -0.64 kcal Total: -79.72 1.49 -78.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122174776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.710 kcal (2) G-P(sol) polarization free energy of solvation -79.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds