Wall clock time and date at job start Sat Apr 11 2020 00:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 S 1.65603 * 119.99810 * 94.99963 * 12 2 1 14 14 O 1.42102 * 104.27902 * 181.07148 * 13 12 2 15 15 O 1.42094 * 104.27834 * 308.93143 * 13 12 2 16 16 C 1.81398 * 104.44892 * 65.00241 * 13 12 2 17 17 C 1.50701 * 109.47354 * 179.97438 * 16 13 12 18 18 C 1.38213 * 120.00812 * 269.72516 * 17 16 13 19 19 C 1.38335 * 120.00900 * 179.76877 * 18 17 16 20 20 Cl 1.73598 * 119.98351 * 180.25599 * 19 18 17 21 21 C 1.38368 * 120.02485 * 0.50639 * 19 18 17 22 22 C 1.38169 * 120.01679 * 359.74465 * 21 19 18 23 23 C 1.38442 * 120.00305 * 89.99816 * 17 16 13 24 24 F 1.35102 * 120.01104 * 0.02562 * 23 17 16 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00849 * 275.00464 * 12 2 1 30 30 H 1.09000 * 109.47405 * 300.00308 * 16 13 12 31 31 H 1.09003 * 109.47320 * 60.00317 * 16 13 12 32 32 H 1.07994 * 119.99294 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.99231 * 179.72332 * 21 19 18 34 34 H 1.08000 * 120.00555 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 2.8122 -0.8077 -3.4936 15 8 1.2751 0.9965 -2.7846 16 6 3.8313 1.1871 -2.0441 17 6 4.2872 2.0314 -3.2062 18 6 5.2441 1.5478 -4.0784 19 6 5.6592 2.3208 -5.1479 20 17 6.8563 1.7102 -6.2469 21 6 5.1244 3.5826 -5.3390 22 6 4.1716 4.0691 -4.4647 23 6 3.7518 3.2937 -3.3969 24 9 2.8208 3.7692 -2.5411 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.1109 -1.6562 -1.1949 30 1 3.5400 1.8341 -1.2167 31 1 4.6459 0.5361 -1.7268 32 1 5.6648 0.5647 -3.9274 33 1 5.4521 4.1874 -6.1716 34 1 3.7546 5.0542 -4.6138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123816561.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:26:45 Heat of formation + Delta-G solvation = -125.664056 kcal Electronic energy + Delta-G solvation = -22772.141200 eV Core-core repulsion = 18964.509753 eV Total energy + Delta-G solvation = -3807.631447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.12478 -40.42230 -38.23128 -37.57238 -37.30213 -36.99976 -34.34077 -34.13028 -31.55228 -30.14974 -28.71162 -27.23889 -24.15012 -23.20244 -22.86953 -20.41122 -19.26104 -18.81163 -18.10970 -18.00368 -17.77850 -17.17159 -17.09215 -16.62991 -16.42389 -15.51447 -15.39290 -14.75134 -14.66727 -14.57331 -14.39059 -14.09971 -14.07613 -13.53589 -13.39070 -13.23542 -13.15508 -12.98654 -12.84219 -12.81057 -12.52051 -12.33007 -12.23709 -12.07599 -12.00944 -11.91048 -11.12239 -10.60552 -10.32563 -10.04167 -9.69262 -8.13973 -6.29515 -0.90715 -0.23728 -0.04158 0.95065 1.45421 1.48685 1.58749 1.82268 2.18787 2.44148 2.67846 2.97959 3.11358 3.15304 3.17756 3.52424 3.82272 3.89310 4.06201 4.29645 4.46187 4.49395 4.65804 4.83287 4.86511 4.88637 4.94059 5.10724 5.14678 5.47308 5.58441 5.71954 6.00989 6.06585 6.40361 6.82767 7.41255 8.91474 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.003663 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.852963 B = 7641.364887 C = 7758.180344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.274 3.726 3 H 0.027 0.973 4 C -0.540 4.540 5 H 0.073 0.927 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.284 1.284 12 N -1.101 6.101 13 S 2.611 3.389 14 O -0.983 6.983 15 O -0.986 6.986 16 C -0.577 4.577 17 C -0.129 4.129 18 C -0.078 4.078 19 C -0.051 4.051 20 Cl -0.047 7.047 21 C -0.062 4.062 22 C -0.132 4.132 23 C 0.091 3.909 24 F -0.137 7.137 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.265 0.735 29 H 0.416 0.584 30 H 0.145 0.855 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.184 0.816 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.706 5.381 -14.282 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.579 4.579 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.861 5.861 13 S 2.706 3.294 14 O -0.973 6.973 15 O -0.976 6.976 16 C -0.706 4.706 17 C -0.133 4.133 18 C -0.098 4.098 19 C -0.078 4.078 20 Cl -0.018 7.018 21 C -0.081 4.081 22 C -0.151 4.151 23 C 0.070 3.930 24 F -0.116 7.116 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.251 0.749 30 H 0.163 0.837 31 H 0.195 0.805 32 H 0.180 0.820 33 H 0.202 0.798 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.207 5.582 -15.026 19.558 hybrid contribution 0.277 -0.532 1.800 1.897 sum 11.484 5.050 -13.225 18.229 Atomic orbital electron populations 1.22149 0.98797 0.99830 1.00509 1.18317 0.91222 0.91561 0.82004 0.95560 1.21660 1.32097 1.13554 0.90622 0.90891 1.25709 0.94986 0.95616 1.01962 1.70012 1.36929 1.23861 1.24538 0.85436 0.78031 0.78684 0.79020 1.18734 1.20712 1.20994 1.55436 1.81251 1.19015 1.30412 1.04749 0.76473 0.74750 0.73397 1.93517 1.84860 1.58050 1.60878 1.93547 1.47657 1.71704 1.84717 1.29503 1.21449 1.13985 1.05654 1.19099 1.01596 0.94644 0.97924 1.21141 0.94895 1.01308 0.92409 1.21014 0.96607 0.95909 0.94258 1.98392 1.54412 1.87568 1.61420 1.21403 0.93779 0.93405 0.99513 1.21498 0.98677 1.02103 0.92795 1.18142 0.90292 0.93233 0.91311 1.91559 1.63011 1.88065 1.68938 0.95468 0.91022 0.94542 0.92521 0.74918 0.83697 0.80463 0.81973 0.79838 0.80239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 9.29 71.98 0.67 -6.91 16 2 C 0.27 13.09 2.66 44.25 0.12 13.21 16 3 H 0.03 1.32 7.15 -2.39 -0.02 1.31 16 4 C -0.54 -27.04 8.76 25.60 0.22 -26.82 16 5 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.91 -49.67 11.32 21.45 0.24 -49.43 16 8 Si 0.96 40.58 29.54 68.60 2.03 42.61 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 N -1.10 -43.75 5.35 -172.53 -0.92 -44.67 16 13 S 2.61 96.43 5.36 -56.49 -0.30 96.12 16 14 O -0.98 -37.44 18.08 -127.65 -2.31 -39.75 16 15 O -0.99 -43.45 17.11 -127.65 -2.18 -45.63 16 16 C -0.58 -17.16 5.91 71.24 0.42 -16.74 16 17 C -0.13 -3.54 5.15 -19.82 -0.10 -3.64 16 18 C -0.08 -1.78 9.48 22.29 0.21 -1.56 16 19 C -0.05 -0.97 6.32 22.32 0.14 -0.83 16 20 Cl -0.05 -0.79 28.95 -2.72 -0.08 -0.86 16 21 C -0.06 -0.96 9.83 22.28 0.22 -0.74 16 22 C -0.13 -2.46 10.03 22.31 0.22 -2.24 16 23 C 0.09 2.46 7.24 22.38 0.16 2.62 16 24 F -0.14 -4.47 16.48 44.97 0.74 -3.73 16 25 H 0.03 1.29 7.42 -2.39 -0.02 1.28 16 26 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.42 15.04 8.79 -96.75 -0.85 14.19 16 30 H 0.14 4.58 6.94 -2.39 -0.02 4.57 16 31 H 0.18 4.12 8.08 -2.39 -0.02 4.10 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -65.96 326.37 0.25 -65.71 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.30 Total: 21.94 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 2.74 Total: -42.30 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -0.68 Total: -94.09 kcal Atomic # 8 Polarization: -80.89 SS G_CDS: -4.49 Total: -85.38 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.74 Total: -3.73 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 96.43 SS G_CDS: -0.30 Total: 96.12 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.86 kcal Total: -65.96 0.25 -65.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123816561.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.958 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds