Wall clock time and date at job start Sat Apr 11 2020 00:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46841 * 2 1 4 4 C 1.50698 * 109.46892 * 240.00205 * 2 1 3 5 5 H 1.07997 * 120.00001 * 245.62002 * 4 2 1 6 6 C 1.37879 * 120.00102 * 65.62728 * 4 2 1 7 7 N 1.31511 * 119.99879 * 197.17789 * 6 4 2 8 8 Si 1.86796 * 120.00112 * 17.44703 * 6 4 2 9 9 H 1.48500 * 109.47395 * 179.73148 * 8 6 4 10 10 H 1.48507 * 109.47290 * 299.72778 * 8 6 4 11 11 H 1.48501 * 109.47193 * 59.72895 * 8 6 4 12 12 N 1.46500 * 109.47200 * 119.99889 * 2 1 3 13 13 S 1.65597 * 120.00142 * 264.99693 * 12 2 1 14 14 O 1.42100 * 104.27941 * 181.07254 * 13 12 2 15 15 O 1.42094 * 104.27754 * 308.93459 * 13 12 2 16 16 C 1.81402 * 104.44676 * 65.00229 * 13 12 2 17 17 C 1.50708 * 109.47156 * 179.97438 * 16 13 12 18 18 C 1.38202 * 120.00613 * 269.72700 * 17 16 13 19 19 C 1.38338 * 120.01055 * 179.77134 * 18 17 16 20 20 Cl 1.73604 * 119.98592 * 180.25318 * 19 18 17 21 21 C 1.38369 * 120.02337 * 0.49906 * 19 18 17 22 22 C 1.38164 * 120.01276 * 359.75889 * 21 19 18 23 23 C 1.38428 * 120.00326 * 90.00168 * 17 16 13 24 24 F 1.35104 * 120.01518 * 359.97438 * 23 17 16 25 25 H 1.09000 * 109.47014 * 306.52133 * 1 2 3 26 26 H 1.08996 * 109.47664 * 66.52427 * 1 2 3 27 27 H 1.08998 * 109.46918 * 186.52819 * 1 2 3 28 28 H 0.97006 * 120.00012 * 355.15241 * 7 6 4 29 29 H 0.96997 * 119.99645 * 85.00231 * 12 2 1 30 30 H 1.08994 * 109.47417 * 299.99807 * 16 13 12 31 31 H 1.09001 * 109.46991 * 59.99865 * 16 13 12 32 32 H 1.08007 * 119.99939 * 0.02562 * 18 17 16 33 33 H 1.07999 * 119.99340 * 179.72556 * 21 19 18 34 34 H 1.07997 * 120.00792 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5762 -1.6383 -1.1340 6 6 1.7975 -0.1755 -2.4794 7 7 1.9224 -0.9277 -3.5509 8 14 1.3093 1.6194 -2.6501 9 1 1.1222 1.9472 -4.0863 10 1 0.0394 1.8588 -1.9183 11 1 2.3780 2.4794 -2.0813 12 7 2.0183 -0.6906 1.1962 13 16 2.4123 0.1772 2.5504 14 8 2.8607 -0.8028 3.4765 15 8 3.2874 1.1906 2.0750 16 6 0.8408 0.8989 3.0985 17 6 1.0717 1.7215 4.3400 18 6 0.9653 1.1355 5.5870 19 6 1.1818 1.8894 6.7266 20 17 1.0544 1.1510 8.2926 21 6 1.4948 3.2329 6.6187 22 6 1.5962 3.8210 5.3727 23 6 1.3847 3.0656 4.2315 24 9 1.4839 3.6402 3.0127 25 1 -0.3633 0.6116 0.8259 26 1 -0.3634 0.4094 -0.9425 27 1 -0.3633 -1.0210 0.1168 28 1 2.2473 -1.8381 -3.4693 29 1 2.1110 -1.6561 1.1948 30 1 0.4387 1.5352 2.3102 31 1 0.1316 0.1009 3.3184 32 1 0.7171 0.0878 5.6720 33 1 1.6594 3.8220 7.5088 34 1 1.8402 4.8697 5.2886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123816830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:26:47 Heat of formation + Delta-G solvation = -102.475190 kcal Electronic energy + Delta-G solvation = -22884.220740 eV Core-core repulsion = 19077.594838 eV Total energy + Delta-G solvation = -3806.625902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.16075 -39.63786 -36.84648 -36.81478 -35.80456 -35.57699 -33.49542 -32.33210 -30.76911 -29.10159 -27.83505 -24.86616 -23.36210 -22.33578 -20.82485 -19.13336 -18.05239 -17.96332 -17.15656 -17.04274 -16.81359 -16.10825 -15.60101 -15.56374 -14.74205 -14.53740 -13.94462 -13.81300 -13.62468 -13.53235 -13.29228 -13.11840 -12.62938 -12.52578 -12.12523 -11.90673 -11.77467 -11.73705 -11.71607 -11.67377 -11.29071 -11.19562 -10.97591 -10.55782 -10.16703 -9.83174 -9.47683 -9.24861 -8.90654 -8.64822 -8.35907 -6.59004 -4.22249 0.23184 0.58180 0.84314 1.69099 2.96813 3.13824 3.28671 3.41863 3.54129 3.78704 3.84941 4.12028 4.23176 4.37983 4.39437 4.58361 4.75441 4.96970 5.12222 5.14526 5.30538 5.45295 5.57061 5.65049 5.67349 5.90467 6.18315 6.24078 6.27436 6.45043 6.99599 7.12566 7.60470 7.91260 8.25644 8.76749 9.46284 10.81066 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.003905 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.276620 B = 7168.516674 C = 7785.562663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.240 3.760 3 H 0.043 0.957 4 C -0.605 4.605 5 H 0.066 0.934 6 C 0.036 3.964 7 N -0.897 5.897 8 Si 1.033 2.967 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.275 1.275 12 N -1.090 6.090 13 S 2.602 3.398 14 O -0.967 6.967 15 O -0.944 6.944 16 C -0.602 4.602 17 C -0.107 4.107 18 C -0.070 4.070 19 C -0.047 4.047 20 Cl -0.058 7.058 21 C -0.077 4.077 22 C -0.139 4.139 23 C 0.120 3.880 24 F -0.118 7.118 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.270 0.730 29 H 0.413 0.587 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 7.764 20.784 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.134 3.866 3 H 0.060 0.940 4 C -0.644 4.644 5 H 0.084 0.916 6 C -0.171 4.171 7 N -0.530 5.530 8 Si 0.860 3.140 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.200 1.200 12 N -0.850 5.850 13 S 2.691 3.309 14 O -0.957 6.957 15 O -0.933 6.933 16 C -0.726 4.726 17 C -0.109 4.109 18 C -0.090 4.090 19 C -0.073 4.073 20 Cl -0.029 7.029 21 C -0.096 4.096 22 C -0.158 4.158 23 C 0.099 3.901 24 F -0.096 7.096 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.248 0.752 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.861 9.143 20.115 22.624 hybrid contribution -0.319 -1.531 0.882 1.796 sum -5.180 7.611 20.997 22.927 Atomic orbital electron populations 1.22844 0.99105 1.01031 1.00684 1.18937 0.90151 0.93463 0.84069 0.93979 1.22023 1.41338 1.10652 0.90394 0.91636 1.25724 0.94541 1.05026 0.91803 1.70860 1.40900 1.10018 1.31253 0.84224 0.77521 0.75433 0.76774 1.20584 1.19782 1.20040 1.55399 1.83625 1.19407 1.26603 1.05271 0.76521 0.75073 0.74012 1.93553 1.79202 1.58458 1.64447 1.93615 1.59422 1.61227 1.79066 1.29979 1.26945 1.11580 1.04109 1.19029 1.05176 0.92692 0.94052 1.20960 0.97712 1.01095 0.89212 1.20850 1.05639 0.93789 0.87069 1.98388 1.96520 1.82652 1.25331 1.20983 0.97692 0.92817 0.98100 1.21146 1.02779 1.01474 0.90388 1.17668 1.00390 0.90719 0.81308 1.91603 1.92932 1.84259 1.40814 0.95689 0.91170 0.92554 0.91984 0.75205 0.83186 0.83231 0.83030 0.83430 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 9.11 37.16 0.34 -3.08 16 2 C 0.24 5.35 2.38 -69.08 -0.16 5.18 16 3 H 0.04 0.97 6.13 -51.93 -0.32 0.65 16 4 C -0.60 -16.18 9.02 -34.44 -0.31 -16.49 16 5 H 0.07 1.87 8.05 -52.49 -0.42 1.45 16 6 C 0.04 0.99 5.29 -17.82 -0.09 0.90 16 7 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 8 Si 1.03 24.01 26.28 -169.99 -4.47 19.54 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.27 -5.59 5.77 56.52 0.33 -5.26 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 12 N -1.09 -21.03 5.35 -5.88 -0.03 -21.06 16 13 S 2.60 46.27 5.42 -107.50 -0.58 45.69 16 14 O -0.97 -18.19 18.08 -57.54 -1.04 -19.23 16 15 O -0.94 -20.23 17.39 -57.54 -1.00 -21.23 16 16 C -0.60 -8.05 5.32 36.01 0.19 -7.86 16 17 C -0.11 -1.37 5.15 -104.56 -0.54 -1.91 16 18 C -0.07 -0.79 9.48 -39.56 -0.38 -1.16 16 19 C -0.05 -0.47 6.32 -39.50 -0.25 -0.72 16 20 Cl -0.06 -0.52 28.96 -51.86 -1.50 -2.03 16 21 C -0.08 -0.66 9.83 -39.56 -0.39 -1.05 16 22 C -0.14 -1.33 10.03 -39.52 -0.40 -1.73 16 23 C 0.12 1.53 7.24 -39.42 -0.29 1.24 16 24 F -0.12 -1.72 16.48 2.25 0.04 -1.68 16 25 H 0.02 0.38 5.93 -51.93 -0.31 0.07 16 26 H 0.07 1.43 4.88 -51.93 -0.25 1.18 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 29 H 0.41 7.48 8.79 -34.47 -0.30 7.17 16 30 H 0.15 1.95 6.18 -51.93 -0.32 1.63 16 31 H 0.15 1.52 8.08 -51.92 -0.42 1.10 16 32 H 0.15 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -32.77 319.88 -8.54 -41.31 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.26 Total: 6.24 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -2.27 Total: -26.67 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.73 Total: -46.76 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -2.04 Total: -40.46 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.47 Total: 19.54 kcal Atomic # 16 Polarization: 46.27 SS G_CDS: -0.58 Total: 45.69 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.77 -8.54 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123816830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.165 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds