Wall clock time and date at job start Sat Apr 11 2020 00:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46841 * 2 1 4 4 C 1.50698 * 109.46892 * 240.00205 * 2 1 3 5 5 H 1.07997 * 120.00001 * 245.62002 * 4 2 1 6 6 C 1.37879 * 120.00102 * 65.62728 * 4 2 1 7 7 N 1.31511 * 119.99879 * 197.17789 * 6 4 2 8 8 Si 1.86796 * 120.00112 * 17.44703 * 6 4 2 9 9 H 1.48500 * 109.47395 * 179.73148 * 8 6 4 10 10 H 1.48507 * 109.47290 * 299.72778 * 8 6 4 11 11 H 1.48501 * 109.47193 * 59.72895 * 8 6 4 12 12 N 1.46500 * 109.47200 * 119.99889 * 2 1 3 13 13 S 1.65597 * 120.00142 * 264.99693 * 12 2 1 14 14 O 1.42100 * 104.27941 * 181.07254 * 13 12 2 15 15 O 1.42094 * 104.27754 * 308.93459 * 13 12 2 16 16 C 1.81402 * 104.44676 * 65.00229 * 13 12 2 17 17 C 1.50708 * 109.47156 * 179.97438 * 16 13 12 18 18 C 1.38202 * 120.00613 * 269.72700 * 17 16 13 19 19 C 1.38338 * 120.01055 * 179.77134 * 18 17 16 20 20 Cl 1.73604 * 119.98592 * 180.25318 * 19 18 17 21 21 C 1.38369 * 120.02337 * 0.49906 * 19 18 17 22 22 C 1.38164 * 120.01276 * 359.75889 * 21 19 18 23 23 C 1.38428 * 120.00326 * 90.00168 * 17 16 13 24 24 F 1.35104 * 120.01518 * 359.97438 * 23 17 16 25 25 H 1.09000 * 109.47014 * 306.52133 * 1 2 3 26 26 H 1.08996 * 109.47664 * 66.52427 * 1 2 3 27 27 H 1.08998 * 109.46918 * 186.52819 * 1 2 3 28 28 H 0.97006 * 120.00012 * 355.15241 * 7 6 4 29 29 H 0.96997 * 119.99645 * 85.00231 * 12 2 1 30 30 H 1.08994 * 109.47417 * 299.99807 * 16 13 12 31 31 H 1.09001 * 109.46991 * 59.99865 * 16 13 12 32 32 H 1.08007 * 119.99939 * 0.02562 * 18 17 16 33 33 H 1.07999 * 119.99340 * 179.72556 * 21 19 18 34 34 H 1.07997 * 120.00792 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5762 -1.6383 -1.1340 6 6 1.7975 -0.1755 -2.4794 7 7 1.9224 -0.9277 -3.5509 8 14 1.3093 1.6194 -2.6501 9 1 1.1222 1.9472 -4.0863 10 1 0.0394 1.8588 -1.9183 11 1 2.3780 2.4794 -2.0813 12 7 2.0183 -0.6906 1.1962 13 16 2.4123 0.1772 2.5504 14 8 2.8607 -0.8028 3.4765 15 8 3.2874 1.1906 2.0750 16 6 0.8408 0.8989 3.0985 17 6 1.0717 1.7215 4.3400 18 6 0.9653 1.1355 5.5870 19 6 1.1818 1.8894 6.7266 20 17 1.0544 1.1510 8.2926 21 6 1.4948 3.2329 6.6187 22 6 1.5962 3.8210 5.3727 23 6 1.3847 3.0656 4.2315 24 9 1.4839 3.6402 3.0127 25 1 -0.3633 0.6116 0.8259 26 1 -0.3634 0.4094 -0.9425 27 1 -0.3633 -1.0210 0.1168 28 1 2.2473 -1.8381 -3.4693 29 1 2.1110 -1.6561 1.1948 30 1 0.4387 1.5352 2.3102 31 1 0.1316 0.1009 3.3184 32 1 0.7171 0.0878 5.6720 33 1 1.6594 3.8220 7.5088 34 1 1.8402 4.8697 5.2886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123816830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:26:47 Heat of formation + Delta-G solvation = -126.690660 kcal Electronic energy + Delta-G solvation = -22885.270802 eV Core-core repulsion = 19077.594838 eV Total energy + Delta-G solvation = -3807.675964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.12850 -40.43172 -38.31269 -37.57935 -37.47547 -37.08551 -34.41530 -34.32009 -31.56025 -30.73243 -28.80426 -26.75656 -24.16287 -23.22956 -22.59046 -20.61749 -19.83082 -18.87361 -18.63078 -18.03165 -17.86228 -17.20456 -17.05305 -16.66431 -16.17683 -15.52896 -15.28202 -14.96706 -14.77950 -14.72087 -14.44825 -14.33966 -14.14624 -13.87672 -13.51508 -13.36512 -13.25640 -13.18733 -12.85369 -12.80018 -12.52930 -12.32417 -12.08010 -11.98078 -11.89047 -11.56329 -11.20289 -10.45171 -10.43589 -10.15526 -9.71193 -8.77036 -6.41000 -0.99915 -0.24280 -0.05005 0.95283 1.44651 1.56737 1.67869 1.76644 2.18326 2.46066 2.64081 2.95830 3.04087 3.06857 3.11449 3.50436 3.78287 3.88354 4.04507 4.23309 4.24729 4.45788 4.58007 4.63054 4.72331 4.80438 4.86089 4.90195 4.94311 5.34172 5.46706 5.55310 5.83489 6.01182 6.19249 6.57472 7.36145 8.61428 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.003905 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.276620 B = 7168.516674 C = 7785.562663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.239 3.761 3 H 0.038 0.962 4 C -0.610 4.610 5 H 0.029 0.971 6 C -0.014 4.014 7 N -0.932 5.932 8 Si 1.062 2.938 9 H -0.284 1.284 10 H -0.222 1.222 11 H -0.272 1.272 12 N -1.099 6.099 13 S 2.599 3.401 14 O -0.984 6.984 15 O -0.991 6.991 16 C -0.574 4.574 17 C -0.130 4.130 18 C -0.076 4.076 19 C -0.053 4.053 20 Cl -0.049 7.049 21 C -0.062 4.062 22 C -0.133 4.133 23 C 0.094 3.906 24 F -0.135 7.135 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.254 0.746 29 H 0.415 0.585 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 9.840 23.772 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.132 3.868 3 H 0.056 0.944 4 C -0.650 4.650 5 H 0.048 0.952 6 C -0.213 4.213 7 N -0.567 5.567 8 Si 0.882 3.118 9 H -0.210 1.210 10 H -0.145 1.145 11 H -0.197 1.197 12 N -0.857 5.857 13 S 2.696 3.304 14 O -0.974 6.974 15 O -0.981 6.981 16 C -0.704 4.704 17 C -0.133 4.133 18 C -0.096 4.096 19 C -0.080 4.080 20 Cl -0.020 7.020 21 C -0.081 4.081 22 C -0.152 4.152 23 C 0.074 3.926 24 F -0.113 7.113 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.249 0.751 30 H 0.177 0.823 31 H 0.205 0.795 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.807 11.164 23.099 26.543 hybrid contribution 0.353 -2.198 0.190 2.235 sum -6.454 8.965 23.289 25.776 Atomic orbital electron populations 1.22728 0.96097 1.02533 1.02079 1.18798 0.92341 0.92587 0.83113 0.94446 1.22306 1.40258 1.09512 0.92875 0.95218 1.27073 0.94347 1.08250 0.91671 1.70985 1.43634 1.09643 1.32438 0.83926 0.79753 0.70857 0.77283 1.20972 1.14525 1.19704 1.55279 1.84097 1.19513 1.26856 1.05096 0.77867 0.74220 0.73230 1.93525 1.80624 1.59162 1.64088 1.93554 1.62803 1.61942 1.79760 1.29631 1.23047 1.12724 1.04958 1.19043 1.07314 0.92889 0.94090 1.21157 0.97504 1.01868 0.89088 1.21036 1.05313 0.94440 0.87194 1.98398 1.96441 1.82636 1.24534 1.21403 0.95338 0.92438 0.98936 1.21498 1.01436 1.02627 0.89618 1.18088 1.01646 0.91290 0.81611 1.91559 1.93265 1.84508 1.41975 0.91155 0.92061 0.91924 0.93654 0.75086 0.82259 0.79498 0.81882 0.80082 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.28 9.11 71.98 0.66 -5.62 16 2 C 0.24 10.47 2.38 44.24 0.11 10.58 16 3 H 0.04 1.70 6.13 -2.38 -0.01 1.68 16 4 C -0.61 -33.54 9.02 25.60 0.23 -33.31 16 5 H 0.03 1.79 8.05 -2.91 -0.02 1.76 16 6 C -0.01 -0.77 5.29 84.66 0.45 -0.33 16 7 N -0.93 -56.97 13.70 21.45 0.29 -56.67 16 8 Si 1.06 47.62 26.28 68.60 1.80 49.43 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.22 -8.19 5.77 99.48 0.57 -7.61 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -1.10 -42.16 5.35 -172.52 -0.92 -43.09 16 13 S 2.60 90.48 5.42 -56.49 -0.31 90.17 16 14 O -0.98 -36.55 18.08 -127.65 -2.31 -38.86 16 15 O -0.99 -42.79 17.39 -127.65 -2.22 -45.01 16 16 C -0.57 -13.66 5.32 71.24 0.38 -13.28 16 17 C -0.13 -2.99 5.15 -19.83 -0.10 -3.10 16 18 C -0.08 -1.49 9.48 22.28 0.21 -1.28 16 19 C -0.05 -0.88 6.32 22.32 0.14 -0.74 16 20 Cl -0.05 -0.74 28.96 -2.72 -0.08 -0.82 16 21 C -0.06 -0.82 9.83 22.28 0.22 -0.60 16 22 C -0.13 -2.09 10.03 22.31 0.22 -1.87 16 23 C 0.09 2.18 7.24 22.37 0.16 2.34 16 24 F -0.13 -3.70 16.48 44.97 0.74 -2.96 16 25 H 0.07 1.86 5.93 -2.39 -0.01 1.85 16 26 H 0.06 2.30 4.88 -2.39 -0.01 2.29 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 28 H 0.25 15.76 8.73 -92.70 -0.81 14.96 16 29 H 0.41 15.28 8.79 -96.75 -0.85 14.43 16 30 H 0.16 3.58 6.18 -2.39 -0.01 3.56 16 31 H 0.19 2.99 8.08 -2.39 -0.02 2.97 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.72 319.88 -0.18 -74.90 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.14 Total: 20.11 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 2.67 Total: -47.21 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -0.63 Total: -99.76 kcal Atomic # 8 Polarization: -79.34 SS G_CDS: -4.53 Total: -83.86 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.74 Total: -2.96 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.80 Total: 49.43 kcal Atomic # 16 Polarization: 90.48 SS G_CDS: -0.31 Total: 90.17 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -74.72 -0.18 -74.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123816830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.787 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds