Wall clock time and date at job start Sat Apr 11 2020 00:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46889 * 2 1 4 4 N 1.46502 * 109.47146 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99360 * 273.98631 * 4 3 2 6 6 H 1.08004 * 119.99407 * 173.11959 * 5 4 3 7 7 C 1.38807 * 120.00646 * 353.11755 * 5 4 3 8 8 N 1.31618 * 119.99512 * 31.04765 * 7 5 4 9 9 Si 1.86793 * 120.00132 * 211.05126 * 7 5 4 10 10 H 1.48494 * 109.47586 * 59.99758 * 9 7 5 11 11 H 1.48507 * 109.47031 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47016 * 299.99703 * 9 7 5 13 13 S 1.65597 * 119.99940 * 93.98527 * 4 3 2 14 14 O 1.42098 * 106.40180 * 329.31405 * 13 4 3 15 15 O 1.42107 * 106.40086 * 196.39574 * 13 4 3 16 16 C 1.76197 * 107.21762 * 82.85934 * 13 4 3 17 17 C 1.38252 * 119.97985 * 244.87643 * 16 13 4 18 18 C 1.38180 * 120.03705 * 180.30009 * 17 16 13 19 19 C 1.38488 * 120.00151 * 359.72162 * 18 17 16 20 20 F 1.35105 * 120.01719 * 180.02562 * 19 18 17 21 21 C 1.38412 * 119.96251 * 0.02562 * 19 18 17 22 22 C 1.38334 * 119.96227 * 359.97438 * 21 19 18 23 23 Cl 1.73602 * 120.00144 * 180.02562 * 22 21 19 24 24 H 1.09008 * 109.46691 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46955 * 299.98932 * 1 2 3 26 26 H 1.08991 * 109.47752 * 59.99860 * 1 2 3 27 27 H 1.09005 * 109.46524 * 240.00750 * 2 1 3 28 28 H 1.08992 * 109.47315 * 120.00448 * 2 1 3 29 29 H 1.08998 * 109.47218 * 60.00367 * 3 2 1 30 30 H 1.09005 * 109.46950 * 300.00507 * 3 2 1 31 31 H 0.97011 * 120.00026 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.97747 * 359.97438 * 17 16 13 33 33 H 1.08004 * 119.99783 * 179.69411 * 18 17 16 34 34 H 1.08002 * 120.02093 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1900 1.3600 1.1822 6 1 5.2643 1.2480 1.1773 7 6 3.5040 1.4202 2.3874 8 7 2.2749 0.9565 2.4688 9 14 4.3251 2.1593 3.8936 10 1 4.6879 3.5723 3.6164 11 1 3.3885 2.1049 5.0448 12 1 5.5519 1.3877 4.2173 13 16 4.3324 1.5425 -1.4316 14 8 3.5174 0.9135 -2.4111 15 8 5.6657 1.1373 -1.1533 16 6 4.4117 3.2471 -1.8703 17 6 3.7697 3.6982 -3.0086 18 6 3.8363 5.0336 -3.3571 19 6 4.5416 5.9222 -2.5628 20 9 4.6065 7.2281 -2.9029 21 6 5.1800 5.4717 -1.4203 22 6 5.1123 4.1344 -1.0729 23 17 5.9120 3.5683 0.3602 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.7955 0.9982 3.3111 32 1 3.2203 3.0053 -3.6286 33 1 3.3387 5.3844 -4.2492 34 1 5.7299 6.1639 -0.8000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128057214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:26:52 Heat of formation + Delta-G solvation = -94.001618 kcal Electronic energy + Delta-G solvation = -23768.021455 eV Core-core repulsion = 19961.762995 eV Total energy + Delta-G solvation = -3806.258460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.20337 -40.09613 -38.15682 -37.97559 -37.36507 -36.43302 -33.92766 -32.89736 -32.21539 -31.68386 -27.62770 -25.36881 -24.31236 -24.20705 -22.12945 -20.39553 -19.50255 -18.93630 -18.44735 -18.07286 -17.71064 -16.88107 -16.31757 -16.15809 -16.03384 -15.38428 -15.20134 -15.11230 -14.69796 -14.57948 -14.42624 -14.12485 -13.86853 -13.45731 -12.90746 -12.88232 -12.78412 -12.68511 -12.51526 -12.38974 -12.25124 -12.19259 -12.10656 -12.04377 -11.67157 -11.48134 -11.16839 -10.59606 -10.31834 -10.01018 -9.90192 -8.31307 -5.58046 -0.55105 -0.19501 -0.11326 0.91860 1.46890 1.52450 1.56990 2.03512 2.33103 2.64504 2.88774 2.97048 3.19627 3.47653 3.72144 3.84397 4.15036 4.30183 4.38290 4.49960 4.61989 4.68831 4.74833 4.79264 4.83980 4.92094 5.25158 5.27404 5.36127 5.51471 5.53732 5.61720 5.89083 6.06622 6.59993 6.96874 7.38365 8.64077 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.006989 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.657882 B = 4005.540579 C = 4974.857620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 C 0.140 3.860 4 N -0.821 5.821 5 C -0.294 4.294 6 H 0.107 0.893 7 C 0.035 3.965 8 N -0.822 5.822 9 Si 0.916 3.084 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.275 1.275 13 S 2.584 3.416 14 O -0.997 6.997 15 O -0.995 6.995 16 C -0.697 4.697 17 C 0.000 4.000 18 C -0.162 4.162 19 C 0.149 3.851 20 F -0.124 7.124 21 C -0.174 4.174 22 C 0.062 3.938 23 Cl -0.034 7.034 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.277 0.723 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 8.391 -5.290 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C 0.014 3.986 4 N -0.649 5.649 5 C -0.435 4.435 6 H 0.125 0.875 7 C -0.176 4.176 8 N -0.460 5.460 9 Si 0.740 3.260 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.200 1.200 13 S 2.679 3.321 14 O -0.987 6.987 15 O -0.984 6.984 16 C -0.778 4.778 17 C -0.020 4.020 18 C -0.181 4.181 19 C 0.130 3.870 20 F -0.102 7.102 21 C -0.194 4.194 22 C 0.034 3.966 23 Cl -0.005 7.005 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.200 0.800 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.246 7.766 -5.762 9.750 hybrid contribution 0.610 1.188 1.059 1.704 sum -0.636 8.954 -4.703 10.134 Atomic orbital electron populations 1.21527 0.94681 1.01286 1.01215 1.21700 0.96147 0.97187 1.00550 1.21322 0.78510 0.97958 1.00766 1.53672 1.13486 1.76448 1.21299 1.19478 0.93634 1.47482 0.82904 0.87544 1.25563 0.96008 0.95935 1.00057 1.70276 1.12848 1.35143 1.27749 0.86167 0.79399 0.80701 0.79725 1.18974 1.20012 1.20045 1.08056 0.73235 0.77342 0.73451 1.93382 1.69447 1.75445 1.60450 1.93390 1.37869 1.82571 1.84617 1.32100 1.09680 1.30748 1.05249 1.21041 0.92427 0.96207 0.92286 1.21650 1.01606 0.92555 1.02301 1.17651 0.96966 0.78512 0.93917 1.91549 1.94430 1.32591 1.91675 1.21229 1.04484 0.94755 0.98917 1.20389 0.93546 0.93335 0.89377 1.98482 1.78317 1.88181 1.35509 0.92628 0.92673 0.92961 0.95500 0.90760 0.88855 0.93708 0.91231 0.81715 0.80035 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.91 71.98 0.71 -3.56 16 2 C -0.12 -4.82 5.72 30.59 0.17 -4.64 16 3 C 0.14 5.96 4.57 86.38 0.39 6.35 16 4 N -0.82 -37.85 2.90 -343.44 -1.00 -38.85 16 5 C -0.29 -14.20 7.27 84.03 0.61 -13.58 16 6 H 0.11 5.37 6.13 -2.91 -0.02 5.35 16 7 C 0.04 1.62 5.01 84.86 0.43 2.05 16 8 N -0.82 -37.23 8.47 21.65 0.18 -37.05 16 9 Si 0.92 37.04 29.65 68.60 2.03 39.07 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 11 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 12 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 13 S 2.58 116.08 5.01 -56.49 -0.28 115.80 16 14 O -1.00 -46.00 15.90 -128.00 -2.04 -48.04 16 15 O -0.99 -49.80 15.15 -128.00 -1.94 -51.74 16 16 C -0.70 -26.27 5.91 22.30 0.13 -26.14 16 17 C 0.00 -0.01 9.55 22.26 0.21 0.20 16 18 C -0.16 -3.95 10.03 22.32 0.22 -3.73 16 19 C 0.15 3.90 7.30 22.37 0.16 4.06 16 20 F -0.12 -2.94 17.27 44.97 0.78 -2.16 16 21 C -0.17 -5.11 9.81 22.33 0.22 -4.89 16 22 C 0.06 2.24 6.30 22.32 0.14 2.38 16 23 Cl -0.03 -1.35 23.44 -2.72 -0.06 -1.42 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 25 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.15 7.82 -2.38 -0.02 1.13 16 28 H 0.07 3.41 6.48 -2.39 -0.02 3.40 16 29 H 0.09 4.10 5.71 -2.39 -0.01 4.09 16 30 H 0.04 1.74 7.84 -2.38 -0.02 1.72 16 31 H 0.28 11.82 8.31 -92.70 -0.77 11.05 16 32 H 0.17 4.55 7.33 -2.91 -0.02 4.53 16 33 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -55.42 310.65 2.23 -53.19 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.14 Total: 12.70 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.41 Total: -41.50 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -0.81 Total: -75.90 kcal Atomic # 8 Polarization: -95.81 SS G_CDS: -3.97 Total: -99.78 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: 116.08 SS G_CDS: -0.28 Total: 115.80 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.06 Total: -1.42 kcal Total: -55.42 2.23 -53.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128057214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.808 kcal (2) G-P(sol) polarization free energy of solvation -55.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds