Wall clock time and date at job start Sat Apr 11 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 H 1.09005 * 109.47013 * 304.98029 * 3 2 1 5 5 C 1.50704 * 109.47011 * 184.98688 * 3 2 1 6 6 H 1.07996 * 120.00386 * 239.99310 * 5 3 2 7 7 C 1.37884 * 119.99940 * 59.99885 * 5 3 2 8 8 N 1.31519 * 119.99856 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00030 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46904 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 119.99555 * 9 7 5 12 12 H 1.48491 * 109.47460 * 239.99893 * 9 7 5 13 13 N 1.46498 * 109.47454 * 64.98538 * 3 2 1 14 14 S 1.65603 * 119.99939 * 232.59224 * 13 3 2 15 15 O 1.42097 * 106.40079 * 175.43894 * 14 13 3 16 16 O 1.42098 * 106.40107 * 308.36077 * 14 13 3 17 17 C 1.76196 * 107.21445 * 61.89957 * 14 13 3 18 18 C 1.38215 * 119.99337 * 92.58133 * 17 14 13 19 19 C 1.38436 * 119.98691 * 179.78669 * 18 17 14 20 20 F 1.35096 * 120.01101 * 180.25261 * 19 18 17 21 21 C 1.38471 * 119.97684 * 0.48107 * 19 18 17 22 22 C 1.38171 * 119.98764 * 359.74876 * 21 19 18 23 23 C 1.38330 * 119.99507 * 272.84734 * 17 14 13 24 24 Cl 1.73600 * 119.98800 * 0.02562 * 23 17 14 25 25 H 1.09009 * 109.47273 * 303.80994 * 1 2 3 26 26 H 1.09002 * 109.47161 * 63.80476 * 1 2 3 27 27 H 1.08995 * 109.47891 * 183.80847 * 1 2 3 28 28 H 1.09004 * 109.47091 * 239.99801 * 2 1 3 29 29 H 1.08998 * 109.46932 * 119.99705 * 2 1 3 30 30 H 0.97002 * 119.99771 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00028 * 52.59610 * 13 3 2 32 32 H 1.08003 * 120.00192 * 359.97438 * 18 17 14 33 33 H 1.07993 * 120.01084 * 179.72129 * 21 19 18 34 34 H 1.07994 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9814 -0.8421 5 6 3.5419 1.4442 -0.1235 6 1 4.1471 1.8889 0.6526 7 6 4.1436 0.8782 -1.2275 8 7 3.4066 0.3363 -2.1725 9 14 6.0052 0.8809 -1.3810 10 1 6.5987 1.5461 -0.1933 11 1 6.4973 -0.5178 -1.4618 12 1 6.3996 1.6162 -2.6093 13 7 1.6522 2.0976 1.2516 14 16 0.8493 3.5455 1.2141 15 8 0.5250 3.8595 2.5615 16 8 1.6110 4.4051 0.3774 17 6 -0.6811 3.2718 0.3848 18 6 -1.8136 2.9554 1.1111 19 6 -3.0169 2.7447 0.4597 20 9 -4.1253 2.4404 1.1696 21 6 -3.0829 2.8414 -0.9200 22 6 -1.9490 3.1531 -1.6455 23 6 -0.7476 3.3683 -0.9936 24 17 0.6770 3.7583 -1.9058 25 1 -0.3634 0.5719 0.8539 26 1 -0.3633 0.4537 -0.9221 27 1 -0.3635 -1.0253 0.0683 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8299 -0.0623 -2.9490 31 1 1.8657 1.6834 2.1023 32 1 -1.7605 2.8755 2.1868 33 1 -4.0203 2.6727 -1.4291 34 1 -2.0003 3.2281 -2.7216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132164212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:05 Heat of formation + Delta-G solvation = -93.698169 kcal Electronic energy + Delta-G solvation = -23867.327070 eV Core-core repulsion = 20061.081768 eV Total energy + Delta-G solvation = -3806.245302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.07799 -39.18713 -36.87614 -36.14862 -35.95428 -35.29807 -32.20308 -31.66832 -30.64984 -30.32303 -26.65640 -23.84626 -23.09608 -22.89839 -20.22840 -19.37125 -18.14196 -17.26778 -16.80495 -16.69255 -16.33948 -15.79014 -15.62407 -15.27429 -14.62709 -14.22795 -13.90617 -13.56757 -13.44555 -13.05195 -13.01749 -12.78468 -12.09651 -12.00559 -11.80292 -11.74876 -11.52501 -11.30461 -11.05691 -11.03562 -10.90704 -10.79701 -10.25733 -10.06088 -9.93781 -9.83782 -9.64608 -9.45851 -8.68430 -8.41555 -8.26479 -6.08315 -4.13821 0.43020 0.84323 0.92923 2.15579 3.03034 3.27885 3.36465 3.41213 3.65099 3.96800 4.19200 4.35864 4.41144 4.59738 4.89495 5.13448 5.22298 5.24842 5.46175 5.66653 5.74434 5.81321 6.06011 6.09824 6.25859 6.46048 6.47712 6.75673 6.91077 7.09803 7.56985 7.63883 7.87864 8.03976 8.25789 8.88303 9.51297 10.96403 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.005608 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.553146 B = 4991.677462 C = 5147.563623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.264 3.736 4 H 0.065 0.935 5 C -0.516 4.516 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 N -1.093 6.093 14 S 2.682 3.318 15 O -0.979 6.979 16 O -0.931 6.931 17 C -0.641 4.641 18 C -0.042 4.042 19 C 0.076 3.924 20 F -0.135 7.135 21 C -0.093 4.093 22 C -0.105 4.105 23 C 0.041 3.959 24 Cl 0.010 6.990 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.106 0.894 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.408 0.592 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.166 2.782 1.276 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.160 3.840 4 H 0.082 0.918 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.855 5.855 14 S 2.766 3.234 15 O -0.969 6.969 16 O -0.920 6.920 17 C -0.724 4.724 18 C -0.061 4.061 19 C 0.055 3.945 20 F -0.113 7.113 21 C -0.112 4.112 22 C -0.125 4.125 23 C 0.013 3.987 24 Cl 0.040 6.960 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.857 3.599 1.165 12.445 hybrid contribution 0.290 -0.816 -0.154 0.880 sum -11.566 2.783 1.011 11.939 Atomic orbital electron populations 1.21891 0.99388 0.99589 0.99833 1.21962 0.91654 1.00129 1.03323 1.18956 0.95651 0.90003 0.79344 0.91777 1.21438 0.90986 1.37371 1.05817 0.91778 1.24872 0.98314 0.95058 0.95523 1.69847 1.34831 1.38594 1.09535 0.86488 0.85462 0.77562 0.78217 1.19683 1.21078 1.20964 1.55528 1.70757 1.42709 1.16491 1.02456 0.73398 0.74444 0.73121 1.93524 1.85000 1.83694 1.34729 1.93695 1.66554 1.63400 1.68396 1.31212 1.22669 1.14847 1.03669 1.20807 0.89807 0.94346 1.01185 1.17671 0.83268 1.03581 0.89936 1.91521 1.50666 1.90747 1.78399 1.21321 0.99903 0.97856 0.92127 1.21079 0.90273 0.99979 1.01133 1.20766 0.91109 0.95755 0.91096 1.98542 1.33768 1.90668 1.73049 0.94655 0.93942 0.94416 0.87571 0.94111 0.92807 0.75810 0.82517 0.83430 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.70 37.16 0.36 -2.31 16 2 C -0.13 -2.77 5.45 -26.73 -0.15 -2.92 16 3 C 0.26 5.93 2.22 -69.08 -0.15 5.77 16 4 H 0.06 1.47 4.52 -51.93 -0.23 1.24 16 5 C -0.52 -13.25 8.84 -34.44 -0.30 -13.56 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -23.33 11.29 55.43 0.63 -22.70 16 9 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -1.09 -21.13 4.76 -5.88 -0.03 -21.16 16 14 S 2.68 50.24 5.39 -107.50 -0.58 49.66 16 15 O -0.98 -18.85 17.22 -57.17 -0.98 -19.83 16 16 O -0.93 -19.96 14.73 -57.17 -0.84 -20.80 16 17 C -0.64 -10.43 5.17 -39.56 -0.20 -10.64 16 18 C -0.04 -0.59 9.13 -39.52 -0.36 -0.95 16 19 C 0.08 0.96 7.30 -39.42 -0.29 0.67 16 20 F -0.13 -1.68 17.27 2.25 0.04 -1.64 16 21 C -0.09 -1.03 10.03 -39.52 -0.40 -1.43 16 22 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 23 C 0.04 0.66 6.08 -39.50 -0.24 0.42 16 24 Cl 0.01 0.18 22.95 -51.86 -1.19 -1.01 16 25 H 0.03 0.57 6.69 -51.92 -0.35 0.22 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.41 7.00 8.96 -34.47 -0.31 6.69 16 32 H 0.16 2.02 7.56 -52.48 -0.40 1.62 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -29.39 313.84 -8.72 -38.11 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.26 Total: 4.10 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.22 Total: -25.05 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.60 Total: -43.87 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.83 Total: -40.63 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 50.24 SS G_CDS: -0.58 Total: 49.66 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.19 Total: -1.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.39 -8.72 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132164212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.586 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds