Wall clock time and date at job start Sat Apr 11 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 H 1.09005 * 109.47013 * 304.98029 * 3 2 1 5 5 C 1.50704 * 109.47011 * 184.98688 * 3 2 1 6 6 H 1.07996 * 120.00386 * 239.99310 * 5 3 2 7 7 C 1.37884 * 119.99940 * 59.99885 * 5 3 2 8 8 N 1.31519 * 119.99856 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00030 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46904 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 119.99555 * 9 7 5 12 12 H 1.48491 * 109.47460 * 239.99893 * 9 7 5 13 13 N 1.46498 * 109.47454 * 64.98538 * 3 2 1 14 14 S 1.65603 * 119.99939 * 232.59224 * 13 3 2 15 15 O 1.42097 * 106.40079 * 175.43894 * 14 13 3 16 16 O 1.42098 * 106.40107 * 308.36077 * 14 13 3 17 17 C 1.76196 * 107.21445 * 61.89957 * 14 13 3 18 18 C 1.38215 * 119.99337 * 92.58133 * 17 14 13 19 19 C 1.38436 * 119.98691 * 179.78669 * 18 17 14 20 20 F 1.35096 * 120.01101 * 180.25261 * 19 18 17 21 21 C 1.38471 * 119.97684 * 0.48107 * 19 18 17 22 22 C 1.38171 * 119.98764 * 359.74876 * 21 19 18 23 23 C 1.38330 * 119.99507 * 272.84734 * 17 14 13 24 24 Cl 1.73600 * 119.98800 * 0.02562 * 23 17 14 25 25 H 1.09009 * 109.47273 * 303.80994 * 1 2 3 26 26 H 1.09002 * 109.47161 * 63.80476 * 1 2 3 27 27 H 1.08995 * 109.47891 * 183.80847 * 1 2 3 28 28 H 1.09004 * 109.47091 * 239.99801 * 2 1 3 29 29 H 1.08998 * 109.46932 * 119.99705 * 2 1 3 30 30 H 0.97002 * 119.99771 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00028 * 52.59610 * 13 3 2 32 32 H 1.08003 * 120.00192 * 359.97438 * 18 17 14 33 33 H 1.07993 * 120.01084 * 179.72129 * 21 19 18 34 34 H 1.07994 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9814 -0.8421 5 6 3.5419 1.4442 -0.1235 6 1 4.1471 1.8889 0.6526 7 6 4.1436 0.8782 -1.2275 8 7 3.4066 0.3363 -2.1725 9 14 6.0052 0.8809 -1.3810 10 1 6.5987 1.5461 -0.1933 11 1 6.4973 -0.5178 -1.4618 12 1 6.3996 1.6162 -2.6093 13 7 1.6522 2.0976 1.2516 14 16 0.8493 3.5455 1.2141 15 8 0.5250 3.8595 2.5615 16 8 1.6110 4.4051 0.3774 17 6 -0.6811 3.2718 0.3848 18 6 -1.8136 2.9554 1.1111 19 6 -3.0169 2.7447 0.4597 20 9 -4.1253 2.4404 1.1696 21 6 -3.0829 2.8414 -0.9200 22 6 -1.9490 3.1531 -1.6455 23 6 -0.7476 3.3683 -0.9936 24 17 0.6770 3.7583 -1.9058 25 1 -0.3634 0.5719 0.8539 26 1 -0.3633 0.4537 -0.9221 27 1 -0.3635 -1.0253 0.0683 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8299 -0.0623 -2.9490 31 1 1.8657 1.6834 2.1023 32 1 -1.7605 2.8755 2.1868 33 1 -4.0203 2.6727 -1.4291 34 1 -2.0003 3.2281 -2.7216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132164212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:05 Heat of formation + Delta-G solvation = -112.773471 kcal Electronic energy + Delta-G solvation = -23868.154237 eV Core-core repulsion = 20061.081768 eV Total energy + Delta-G solvation = -3807.072469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.06140 -40.27829 -38.38224 -37.62921 -37.45245 -36.85505 -34.09286 -32.74847 -32.19363 -31.40899 -28.47824 -24.96129 -24.80613 -23.99222 -21.89054 -20.72332 -19.45043 -18.91487 -18.04695 -17.94343 -17.74328 -17.03678 -16.82139 -16.76456 -16.29183 -15.51104 -15.21633 -14.90421 -14.71750 -14.65920 -14.41719 -13.85959 -13.64332 -13.46493 -13.27670 -13.13985 -13.07295 -13.03612 -12.73406 -12.62841 -12.33953 -12.27160 -12.03037 -11.68041 -11.49854 -11.45602 -11.13255 -10.71115 -10.35409 -9.96934 -9.78587 -8.04123 -6.14186 -0.73130 -0.47338 -0.20108 0.94119 1.42729 1.47167 1.56120 1.93497 2.23535 2.49148 2.72865 2.94245 3.23787 3.27623 3.70009 3.72207 4.00345 4.12426 4.40192 4.53827 4.60851 4.65468 4.71364 4.76337 4.82567 4.91805 5.18885 5.36530 5.44466 5.48216 5.74026 5.88096 6.11467 6.31216 6.48953 6.91288 7.52278 8.98559 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.005608 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.553146 B = 4991.677462 C = 5147.563623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.264 3.736 4 H 0.063 0.937 5 C -0.536 4.536 6 H 0.051 0.949 7 C 0.026 3.974 8 N -0.904 5.904 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.285 1.285 13 N -1.095 6.095 14 S 2.691 3.309 15 O -0.989 6.989 16 O -0.966 6.966 17 C -0.651 4.651 18 C -0.048 4.048 19 C 0.080 3.920 20 F -0.130 7.130 21 C -0.070 4.070 22 C -0.098 4.098 23 C 0.024 3.976 24 Cl -0.025 7.025 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.415 0.585 32 H 0.165 0.835 33 H 0.192 0.808 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 2.284 1.046 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.159 3.841 4 H 0.081 0.919 5 C -0.576 4.576 6 H 0.069 0.931 7 C -0.174 4.174 8 N -0.543 5.543 9 Si 0.768 3.232 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.211 1.211 13 N -0.857 5.857 14 S 2.780 3.220 15 O -0.980 6.980 16 O -0.955 6.955 17 C -0.738 4.738 18 C -0.068 4.068 19 C 0.060 3.940 20 F -0.108 7.108 21 C -0.088 4.088 22 C -0.117 4.117 23 C -0.005 4.005 24 Cl 0.005 6.995 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.250 0.750 32 H 0.183 0.817 33 H 0.209 0.791 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.236 3.100 0.975 14.602 hybrid contribution 0.884 -0.645 -0.051 1.096 sum -13.352 2.455 0.924 13.607 Atomic orbital electron populations 1.21787 0.96634 1.00997 1.00439 1.21791 0.94153 0.98784 1.01891 1.18800 0.93875 0.90982 0.80415 0.91942 1.21758 0.93068 1.37170 1.05568 0.93117 1.25423 1.01297 0.95153 0.95563 1.69933 1.35730 1.38959 1.09690 0.85773 0.82056 0.77663 0.77737 1.19983 1.20329 1.21086 1.55352 1.71751 1.42565 1.16027 1.01762 0.73835 0.73700 0.72692 1.93503 1.85339 1.83717 1.35395 1.93653 1.68417 1.64495 1.68983 1.30599 1.21585 1.17717 1.03900 1.20927 0.89884 0.94285 1.01688 1.17728 0.82749 1.02923 0.90631 1.91545 1.50193 1.90595 1.78470 1.21772 1.00941 0.94785 0.91318 1.21430 0.89077 0.98539 1.02675 1.20942 0.91184 0.97491 0.90837 1.98529 1.36195 1.91159 1.73663 0.93182 0.94052 0.92660 0.90339 0.94147 0.92812 0.74977 0.81705 0.79073 0.80362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.70 71.98 0.70 -4.09 16 2 C -0.13 -5.33 5.45 30.59 0.17 -5.16 16 3 C 0.26 11.96 2.22 44.25 0.10 12.06 16 4 H 0.06 2.90 4.52 -2.38 -0.01 2.89 16 5 C -0.54 -28.06 8.84 25.60 0.23 -27.84 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.03 1.36 5.29 84.66 0.45 1.81 16 8 N -0.90 -47.95 11.29 21.45 0.24 -47.71 16 9 Si 0.94 42.74 29.54 68.60 2.03 44.76 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -1.10 -42.70 4.76 -172.52 -0.82 -43.52 16 14 S 2.69 101.30 5.39 -56.49 -0.30 100.99 16 15 O -0.99 -37.95 17.22 -128.00 -2.20 -40.15 16 16 O -0.97 -42.52 14.73 -128.00 -1.89 -44.40 16 17 C -0.65 -20.35 5.17 22.29 0.12 -20.23 16 18 C -0.05 -1.24 9.13 22.31 0.20 -1.04 16 19 C 0.08 1.73 7.30 22.37 0.16 1.89 16 20 F -0.13 -2.70 17.27 44.97 0.78 -1.93 16 21 C -0.07 -1.20 10.03 22.31 0.22 -0.98 16 22 C -0.10 -2.10 9.83 22.29 0.22 -1.88 16 23 C 0.02 0.73 6.08 22.33 0.14 0.87 16 24 Cl -0.03 -0.94 22.95 -2.72 -0.06 -1.00 16 25 H 0.05 1.53 6.69 -2.38 -0.02 1.51 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 3.78 5.95 -2.38 -0.01 3.77 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.42 14.39 8.96 -96.75 -0.87 13.52 16 32 H 0.17 3.92 7.56 -2.91 -0.02 3.90 16 33 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -63.85 313.84 0.76 -63.09 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.29 Total: 14.45 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 2.70 Total: -44.60 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -0.58 Total: -91.22 kcal Atomic # 8 Polarization: -80.46 SS G_CDS: -4.09 Total: -84.55 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 101.30 SS G_CDS: -0.30 Total: 100.99 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.06 Total: -1.00 kcal Total: -63.85 0.76 -63.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132164212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.685 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds