Wall clock time and date at job start Sat Apr 11 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48500 * 109.46984 * 270.00213 * 3 2 1 5 5 H 1.48498 * 109.46987 * 30.00081 * 3 2 1 6 6 H 1.48500 * 109.46878 * 150.00455 * 3 2 1 7 7 C 1.38807 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99744 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99763 * 179.97438 * 7 2 1 10 10 C 1.76204 * 99.99719 * 185.65520 * 9 7 2 11 11 C 1.39113 * 120.18761 * 6.86464 * 10 9 7 12 12 C 1.37915 * 120.04584 * 179.97438 * 11 10 9 13 13 C 1.38656 * 120.43686 * 359.97438 * 12 11 10 14 14 C 1.37804 * 120.38754 * 359.97438 * 13 12 11 15 15 C 1.39678 * 119.93306 * 0.02562 * 14 13 12 16 16 C 1.47428 * 120.21400 * 179.97438 * 15 14 13 17 17 O 1.21606 * 120.00296 * 180.02562 * 16 15 14 18 18 N 1.34781 * 119.99850 * 0.02562 * 16 15 14 19 19 O 1.41601 * 119.99844 * 179.97438 * 18 16 15 20 20 C 1.42907 * 113.99866 * 179.97438 * 19 18 16 21 21 C 1.52992 * 109.46885 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.47336 * 60.00568 * 21 20 19 23 23 F 1.39910 * 109.46946 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47548 * 299.99972 * 21 20 19 25 25 H 0.97000 * 119.99719 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.97647 * 359.97438 * 11 10 9 27 27 H 1.07996 * 119.77662 * 179.97438 * 12 11 10 28 28 H 1.08007 * 119.80450 * 180.02562 * 13 12 11 29 29 H 1.07997 * 120.03093 * 179.72612 * 14 13 12 30 30 H 0.96997 * 120.00034 * 359.97438 * 18 16 15 31 31 H 1.08999 * 109.47033 * 300.00425 * 20 19 18 32 32 H 1.09000 * 109.46770 * 60.00051 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.6999 7 6 2.0096 -1.2021 -0.0005 8 1 1.4696 -2.1373 -0.0005 9 16 3.7717 -1.2020 -0.0012 10 6 4.0776 -2.9288 -0.1727 11 6 3.0232 -3.8064 -0.4038 12 6 3.2661 -5.1574 -0.5381 13 6 4.5583 -5.6514 -0.4450 14 6 5.6161 -4.7981 -0.2174 15 6 5.3883 -3.4270 -0.0789 16 6 6.5153 -2.5085 0.1652 17 8 6.3125 -1.3156 0.2856 18 7 7.7706 -2.9911 0.2549 19 8 8.8532 -2.1089 0.4888 20 6 10.1252 -2.7561 0.5612 21 6 11.2146 -1.7125 0.8159 22 9 10.9569 -1.0545 2.0234 23 9 12.4601 -2.3461 0.8862 24 9 11.2234 -0.7827 -0.2293 25 1 -0.4850 0.8401 0.0004 26 1 2.0139 -3.4296 -0.4781 27 1 2.4443 -5.8348 -0.7171 28 1 4.7368 -6.7112 -0.5521 29 1 6.6197 -5.1897 -0.1415 30 1 7.9324 -3.9427 0.1592 31 1 10.1186 -3.4803 1.3758 32 1 10.3258 -3.2692 -0.3794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135223525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:06 Heat of formation + Delta-G solvation = -167.110919 kcal Electronic energy + Delta-G solvation = -23768.004429 eV Core-core repulsion = 19406.779031 eV Total energy + Delta-G solvation = -4361.225398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.043 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.22868 -48.76670 -48.72594 -41.05264 -39.29485 -38.37890 -34.82491 -34.18148 -31.91270 -31.87704 -30.06891 -27.99340 -24.99944 -24.49972 -23.50273 -22.07908 -20.49367 -19.92030 -19.74479 -19.15962 -18.66008 -18.27525 -17.52409 -17.11688 -16.88695 -16.42533 -15.75517 -15.65622 -15.57659 -15.43181 -15.33529 -15.15312 -15.14294 -14.87742 -14.85793 -14.71842 -14.23615 -13.70349 -13.67098 -13.13260 -13.12428 -12.97543 -12.53878 -12.52353 -12.28090 -11.64148 -11.47023 -11.34939 -10.59445 -10.24412 -10.14311 -9.86322 -8.70490 -8.60416 -6.32287 -0.09405 0.30642 0.46945 0.99628 1.22910 1.40740 1.61148 1.71659 1.86748 2.14641 2.60918 2.63926 2.77012 2.81324 2.86891 2.94679 3.54988 3.64424 3.94388 3.95957 3.99872 4.23849 4.53554 4.59518 4.73710 5.04023 5.30758 5.40571 5.48681 5.62314 5.66230 6.03365 6.16567 6.27153 6.83948 7.18942 8.50509 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.003671 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.627670 B = 7625.412841 C = 9360.162253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.258 1.258 5 H -0.252 1.252 6 H -0.243 1.243 7 C -0.583 4.583 8 H 0.085 0.915 9 S 0.017 5.983 10 C -0.050 4.050 11 C -0.167 4.167 12 C -0.066 4.066 13 C -0.143 4.143 14 C -0.049 4.049 15 C -0.162 4.162 16 C 0.564 3.436 17 O -0.541 6.541 18 N -0.569 5.569 19 O -0.162 6.162 20 C -0.018 4.018 21 C 0.470 3.530 22 F -0.187 7.187 23 F -0.164 7.164 24 F -0.187 7.187 25 H 0.280 0.720 26 H 0.114 0.886 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.432 0.568 31 H 0.144 0.856 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.338 -15.443 -0.272 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.150 4.150 3 Si 0.723 3.277 4 H -0.182 1.182 5 H -0.176 1.176 6 H -0.167 1.167 7 C -0.729 4.729 8 H 0.102 0.898 9 S 0.273 5.727 10 C -0.168 4.168 11 C -0.192 4.192 12 C -0.087 4.087 13 C -0.165 4.165 14 C -0.069 4.069 15 C -0.176 4.176 16 C 0.354 3.646 17 O -0.418 6.418 18 N -0.277 5.277 19 O -0.167 6.167 20 C -0.096 4.096 21 C 0.414 3.586 22 F -0.169 7.169 23 F -0.145 7.145 24 F -0.169 7.169 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.167 0.833 28 H 0.192 0.808 29 H 0.192 0.808 30 H 0.278 0.722 31 H 0.162 0.838 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 22.670 -13.008 -0.031 26.137 hybrid contribution -0.861 -0.065 -0.053 0.865 sum 21.809 -13.073 -0.084 25.428 Atomic orbital electron populations 1.69974 1.07280 1.29252 1.47560 1.25516 0.95227 1.01867 0.92366 0.86099 0.80683 0.80338 0.80588 1.18221 1.17620 1.16705 1.23613 0.93213 0.97671 1.58419 0.89761 1.84219 1.03362 1.02246 1.82852 1.22463 0.95853 0.98859 0.99594 1.21457 0.98372 0.94922 1.04441 1.21605 0.99286 0.93235 0.94537 1.21429 0.90978 1.01641 1.02480 1.21543 1.01530 0.89061 0.94760 1.18998 0.89100 0.94760 1.14725 1.18533 0.81136 0.88227 0.76732 1.90806 1.82906 1.17875 1.50183 1.46993 0.97409 1.06679 1.76572 1.90645 1.10035 1.20837 1.95178 1.24314 0.81130 0.94402 1.09756 1.20073 0.82808 0.81708 0.73983 1.93234 1.93961 1.82956 1.46709 1.93247 1.43526 1.81650 1.96088 1.93232 1.96646 1.68681 1.58292 0.91075 0.86823 0.83316 0.80777 0.80760 0.72177 0.83849 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.01 13.96 21.65 0.30 -54.71 16 2 C 0.06 3.38 5.50 84.87 0.47 3.85 16 3 Si 0.90 45.46 27.74 68.60 1.90 47.36 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.24 -12.52 6.74 99.48 0.67 -11.85 16 7 C -0.58 -34.46 9.54 67.96 0.65 -33.81 16 8 H 0.08 5.18 5.21 -2.91 -0.02 5.17 16 9 S 0.02 0.90 16.53 -56.49 -0.93 -0.04 16 10 C -0.05 -2.16 6.14 23.04 0.14 -2.02 16 11 C -0.17 -6.61 9.22 22.40 0.21 -6.40 16 12 C -0.07 -1.77 10.03 22.29 0.22 -1.54 16 13 C -0.14 -2.71 10.02 22.27 0.22 -2.49 16 14 C -0.05 -0.98 9.53 22.52 0.21 -0.77 16 15 C -0.16 -5.35 5.89 -19.95 -0.12 -5.46 16 16 C 0.56 19.55 7.89 86.66 0.68 20.24 16 17 O -0.54 -25.21 14.18 13.30 0.19 -25.03 16 18 N -0.57 -12.68 6.34 -175.88 -1.12 -13.79 16 19 O -0.16 -3.93 11.00 -21.44 -0.24 -4.16 16 20 C -0.02 -0.21 6.19 71.98 0.45 0.24 16 21 C 0.47 7.78 3.32 71.98 0.24 8.02 16 22 F -0.19 -4.08 17.26 44.97 0.78 -3.30 16 23 F -0.16 -2.25 17.32 44.97 0.78 -1.47 16 24 F -0.19 -4.06 17.26 44.97 0.78 -3.28 16 25 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.11 5.28 5.03 -2.91 -0.01 5.27 16 27 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.18 1.34 6.40 -2.91 -0.02 1.32 16 30 H 0.43 4.47 6.57 -92.71 -0.61 3.86 16 31 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -83.46 309.74 6.39 -77.07 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 0.57 Total: 1.51 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.38 Total: -20.16 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.81 Total: -68.50 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.05 Total: -29.19 kcal Atomic # 9 Polarization: -10.39 SS G_CDS: 2.33 Total: -8.06 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -0.93 Total: -0.04 kcal Total: -83.46 6.39 -77.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135223525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.038 kcal (2) G-P(sol) polarization free energy of solvation -83.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds