Wall clock time and date at job start Sat Apr 11 2020 00:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48492 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46878 * 300.00033 * 3 2 1 6 6 H 1.48500 * 109.46796 * 59.99629 * 3 2 1 7 7 C 1.40049 * 119.99373 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99441 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00334 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00231 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00119 * 179.97438 * 9 7 2 12 12 C 1.46495 * 119.99747 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47584 * 324.99346 * 12 11 9 14 14 C 1.50695 * 109.47342 * 85.00013 * 12 11 9 15 15 C 1.38422 * 122.53779 * 219.73155 * 14 12 11 16 16 C 1.33395 * 114.91909 * 179.75512 * 15 14 12 17 17 S 1.75881 * 109.59143 * 0.48716 * 16 15 14 18 18 C 1.33388 * 122.53957 * 40.02379 * 14 12 11 19 19 C 1.50706 * 109.46786 * 204.99952 * 12 11 9 20 20 C 1.38244 * 119.98773 * 139.99975 * 19 12 11 21 21 C 1.38217 * 120.01084 * 180.02562 * 20 19 12 22 22 C 1.38351 * 119.98541 * 0.25893 * 21 20 19 23 23 Cl 1.73604 * 120.00786 * 179.69323 * 22 21 20 24 24 C 1.38349 * 119.97465 * 359.42086 * 22 21 20 25 25 C 1.38212 * 119.98525 * 0.59771 * 24 22 21 26 26 H 0.97002 * 119.99693 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99443 * 359.97438 * 11 9 7 28 28 H 1.07998 * 122.54406 * 0.02562 * 15 14 12 29 29 H 1.08006 * 125.20457 * 180.20595 * 16 15 14 30 30 H 1.07999 * 125.20488 * 359.97438 * 18 14 12 31 31 H 1.07999 * 119.99331 * 0.02562 * 20 19 12 32 32 H 1.08002 * 120.00169 * 179.97438 * 21 20 19 33 33 H 1.08008 * 120.00633 * 180.29755 * 24 22 21 34 34 H 1.08001 * 119.99190 * 179.72131 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8822 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 1.2162 -4.9164 0.0011 13 1 0.3057 -4.8100 0.5910 14 6 0.8572 -5.2898 -1.4140 15 6 -0.3641 -5.8484 -1.7496 16 6 -0.5228 -6.1146 -3.0470 17 16 0.9327 -5.6616 -3.9244 18 6 1.6943 -5.1124 -2.4372 19 6 2.0804 -5.9952 0.6015 20 6 1.5228 -6.9374 1.4456 21 6 2.3151 -7.9267 1.9969 22 6 3.6674 -7.9708 1.7081 23 17 4.6645 -9.2084 2.4066 24 6 4.2235 -7.0316 0.8581 25 6 3.4304 -6.0425 0.3076 26 1 -0.4850 0.8401 -0.0004 27 1 2.9188 -3.6478 0.0002 28 1 -1.1320 -6.0492 -1.0173 29 1 -1.4079 -6.5468 -3.4902 30 1 2.6877 -4.6950 -2.3638 31 1 0.4679 -6.9004 1.6743 32 1 1.8793 -8.6625 2.6567 33 1 5.2783 -7.0683 0.6284 34 1 3.8653 -5.3066 -0.3524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153660648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:19 Heat of formation + Delta-G solvation = 14.288112 kcal Electronic energy + Delta-G solvation = -21504.003288 eV Core-core repulsion = 18133.209848 eV Total energy + Delta-G solvation = -3370.793441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 321.033 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87682 -38.07080 -36.67111 -36.46982 -33.65793 -32.40663 -31.15896 -30.43627 -29.02982 -26.86878 -25.46862 -23.08876 -22.75503 -21.21050 -19.66103 -18.32260 -17.80355 -17.35670 -16.73929 -15.62087 -15.37410 -15.21283 -15.07253 -14.22124 -13.81131 -13.61364 -13.49765 -13.06530 -13.05109 -12.60197 -12.51403 -12.21633 -12.00386 -11.76175 -11.58550 -11.29708 -11.13782 -11.04682 -11.02372 -10.82793 -10.50633 -10.46576 -10.22413 -9.04726 -8.90678 -8.64490 -8.39447 -8.03706 -7.67903 -7.63762 -6.22516 -4.68272 1.11081 1.29073 1.41223 2.02552 2.07121 2.32607 3.10001 3.11272 3.19383 3.23213 3.64722 4.06949 4.54515 4.60441 4.78553 4.85374 5.06162 5.29453 5.34929 5.42587 5.45826 5.65716 5.71721 5.79767 5.92509 5.96553 6.09305 6.19238 6.22689 6.39859 6.59146 6.72080 6.78367 6.92276 7.39800 7.81455 7.98791 8.26621 8.99000 9.43791 10.55277 10.73477 Molecular weight = 321.03amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.004285 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.166218 B = 6533.050862 C = 8256.558432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.573 6.573 11 N -0.757 5.757 12 C 0.249 3.751 13 H 0.096 0.904 14 C -0.093 4.093 15 C -0.112 4.112 16 C -0.219 4.219 17 S 0.064 5.936 18 C -0.185 4.185 19 C -0.062 4.062 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.041 4.041 23 Cl -0.082 7.082 24 C -0.108 4.108 25 C -0.096 4.096 26 H 0.268 0.732 27 H 0.380 0.620 28 H 0.137 0.863 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -15.248 -0.917 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.455 6.455 11 N -0.412 5.412 12 C 0.139 3.861 13 H 0.114 0.886 14 C -0.106 4.106 15 C -0.143 4.143 16 C -0.354 4.354 17 S 0.327 5.673 18 C -0.321 4.321 19 C -0.063 4.063 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.067 4.067 23 Cl -0.053 7.053 24 C -0.127 4.127 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.213 0.787 28 H 0.155 0.845 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.115 -15.283 -2.388 16.292 hybrid contribution 0.543 0.845 1.446 1.760 sum 5.658 -14.438 -0.942 15.536 Atomic orbital electron populations 1.70029 1.07012 1.27172 1.35213 1.25684 0.94602 1.00230 0.92607 0.86344 0.80509 0.81854 0.78240 1.18780 1.20170 1.20151 1.20875 0.93559 0.89248 1.54368 0.91445 1.18225 0.87279 0.82170 0.76182 1.90609 1.13952 1.86471 1.54454 1.46350 1.08356 1.03898 1.82579 1.17975 0.95059 0.83001 0.90015 0.88579 1.19316 0.93690 1.00565 0.97076 1.20036 0.97670 1.00700 0.95927 1.25396 1.02165 1.10599 0.97253 1.83974 1.09282 1.61853 1.12215 1.25223 1.04294 1.08235 0.94323 1.20201 0.94281 0.96036 0.95776 1.21007 1.00260 0.93850 0.96421 1.20982 0.91648 0.99435 1.00702 1.20879 0.91972 0.93544 1.00336 1.98353 1.69855 1.53520 1.83560 1.20990 1.00465 0.94270 0.96945 1.20944 0.93216 0.97785 0.99515 0.92155 0.78742 0.84509 0.82343 0.82375 0.84869 0.85084 0.85077 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.52 11.83 55.55 0.66 -21.86 16 2 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 3 Si 0.91 19.81 29.56 -169.99 -5.02 14.79 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -14.85 9.54 -35.63 -0.34 -15.19 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.07 7.70 -12.99 -0.10 14.97 16 10 O -0.57 -17.75 14.68 5.20 0.08 -17.67 16 11 N -0.76 -15.72 4.56 -57.48 -0.26 -15.99 16 12 C 0.25 4.47 2.46 -70.24 -0.17 4.30 16 13 H 0.10 1.93 7.38 -51.93 -0.38 1.55 16 14 C -0.09 -1.62 4.80 -106.25 -0.51 -2.13 16 15 C -0.11 -1.82 9.95 -41.21 -0.41 -2.23 16 16 C -0.22 -3.20 11.23 29.04 0.33 -2.87 16 17 S 0.06 0.94 23.34 -107.50 -2.51 -1.57 16 18 C -0.19 -3.06 10.43 29.04 0.30 -2.75 16 19 C -0.06 -0.90 4.94 -104.62 -0.52 -1.42 16 20 C -0.10 -1.24 9.67 -39.59 -0.38 -1.63 16 21 C -0.11 -1.27 9.83 -39.55 -0.39 -1.66 16 22 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 23 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 24 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 25 C -0.10 -1.26 8.96 -39.59 -0.35 -1.61 16 26 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 27 H 0.38 6.94 6.85 -40.82 -0.28 6.66 16 28 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.16 2.45 8.03 -52.49 -0.42 2.02 16 31 H 0.13 1.52 8.04 -52.49 -0.42 1.10 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.13 1.60 6.92 -52.49 -0.36 1.23 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -32.88 330.98 -9.96 -42.85 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.11 Total: 9.14 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.28 Total: -12.29 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.40 Total: -37.85 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.08 Total: -17.67 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.88 -9.96 -42.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153660648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.135 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds