Wall clock time and date at job start Sat Apr 11 2020 00:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48492 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46878 * 300.00033 * 3 2 1 6 6 H 1.48500 * 109.46796 * 59.99629 * 3 2 1 7 7 C 1.40049 * 119.99373 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99441 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00334 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00231 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00119 * 179.97438 * 9 7 2 12 12 C 1.46495 * 119.99747 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47584 * 324.99346 * 12 11 9 14 14 C 1.50695 * 109.47342 * 85.00013 * 12 11 9 15 15 C 1.38422 * 122.53779 * 219.73155 * 14 12 11 16 16 C 1.33395 * 114.91909 * 179.75512 * 15 14 12 17 17 S 1.75881 * 109.59143 * 0.48716 * 16 15 14 18 18 C 1.33388 * 122.53957 * 40.02379 * 14 12 11 19 19 C 1.50706 * 109.46786 * 204.99952 * 12 11 9 20 20 C 1.38244 * 119.98773 * 139.99975 * 19 12 11 21 21 C 1.38217 * 120.01084 * 180.02562 * 20 19 12 22 22 C 1.38351 * 119.98541 * 0.25893 * 21 20 19 23 23 Cl 1.73604 * 120.00786 * 179.69323 * 22 21 20 24 24 C 1.38349 * 119.97465 * 359.42086 * 22 21 20 25 25 C 1.38212 * 119.98525 * 0.59771 * 24 22 21 26 26 H 0.97002 * 119.99693 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99443 * 359.97438 * 11 9 7 28 28 H 1.07998 * 122.54406 * 0.02562 * 15 14 12 29 29 H 1.08006 * 125.20457 * 180.20595 * 16 15 14 30 30 H 1.07999 * 125.20488 * 359.97438 * 18 14 12 31 31 H 1.07999 * 119.99331 * 0.02562 * 20 19 12 32 32 H 1.08002 * 120.00169 * 179.97438 * 21 20 19 33 33 H 1.08008 * 120.00633 * 180.29755 * 24 22 21 34 34 H 1.08001 * 119.99190 * 179.72131 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8822 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 1.2162 -4.9164 0.0011 13 1 0.3057 -4.8100 0.5910 14 6 0.8572 -5.2898 -1.4140 15 6 -0.3641 -5.8484 -1.7496 16 6 -0.5228 -6.1146 -3.0470 17 16 0.9327 -5.6616 -3.9244 18 6 1.6943 -5.1124 -2.4372 19 6 2.0804 -5.9952 0.6015 20 6 1.5228 -6.9374 1.4456 21 6 2.3151 -7.9267 1.9969 22 6 3.6674 -7.9708 1.7081 23 17 4.6645 -9.2084 2.4066 24 6 4.2235 -7.0316 0.8581 25 6 3.4304 -6.0425 0.3076 26 1 -0.4850 0.8401 -0.0004 27 1 2.9188 -3.6478 0.0002 28 1 -1.1320 -6.0492 -1.0173 29 1 -1.4079 -6.5468 -3.4902 30 1 2.6877 -4.6950 -2.3638 31 1 0.4679 -6.9004 1.6743 32 1 1.8793 -8.6625 2.6567 33 1 5.2783 -7.0683 0.6284 34 1 3.8653 -5.3066 -0.3524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153660648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:18 Heat of formation + Delta-G solvation = -4.851588 kcal Electronic energy + Delta-G solvation = -21504.833248 eV Core-core repulsion = 18133.209848 eV Total energy + Delta-G solvation = -3371.623400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 321.033 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08872 -39.39597 -38.40251 -37.41030 -35.27435 -34.44628 -32.20243 -31.81823 -30.27354 -28.62151 -27.04877 -24.30535 -23.78790 -22.51423 -21.38642 -19.63359 -19.49435 -18.55169 -18.02871 -17.41779 -16.81413 -16.45286 -16.28850 -15.73795 -15.25999 -14.77636 -14.66021 -14.45794 -14.37563 -14.03114 -13.83049 -13.61460 -13.53381 -13.11228 -12.95278 -12.78327 -12.60155 -12.47438 -12.34143 -12.24486 -11.97128 -11.77472 -11.70500 -10.93168 -10.02028 -9.93655 -9.69905 -9.54568 -9.49974 -9.18303 -8.26732 -6.82545 0.05131 0.19869 0.32168 0.82926 1.09092 1.14105 1.40157 1.40921 1.57685 1.82254 2.25091 2.50306 2.63522 3.08086 3.65640 3.78457 3.81546 3.94586 4.15972 4.23838 4.31406 4.38983 4.53757 4.63021 4.68106 4.77707 4.97907 5.14041 5.21097 5.22615 5.34311 5.44654 5.51596 5.60036 5.78608 5.90819 6.21942 6.29386 6.90013 7.54966 8.52682 8.70513 Molecular weight = 321.03amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.004285 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.166218 B = 6533.050862 C = 8256.558432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.546 3.454 10 O -0.622 6.622 11 N -0.742 5.742 12 C 0.255 3.745 13 H 0.064 0.936 14 C -0.110 4.110 15 C -0.141 4.141 16 C -0.212 4.212 17 S 0.100 5.900 18 C -0.206 4.206 19 C -0.078 4.078 20 C -0.103 4.103 21 C -0.105 4.105 22 C -0.044 4.044 23 Cl -0.068 7.068 24 C -0.105 4.105 25 C -0.101 4.101 26 H 0.273 0.727 27 H 0.393 0.607 28 H 0.142 0.858 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -15.932 -1.283 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.170 1.170 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.350 3.650 10 O -0.508 6.508 11 N -0.397 5.397 12 C 0.146 3.854 13 H 0.082 0.918 14 C -0.123 4.123 15 C -0.172 4.172 16 C -0.347 4.347 17 S 0.363 5.637 18 C -0.342 4.342 19 C -0.079 4.079 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.070 4.070 23 Cl -0.039 7.039 24 C -0.124 4.124 25 C -0.119 4.119 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.160 0.840 29 H 0.206 0.794 30 H 0.180 0.820 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.046 -16.024 -2.755 17.720 hybrid contribution -0.029 0.906 1.554 1.799 sum 7.017 -15.117 -1.201 16.710 Atomic orbital electron populations 1.70193 1.09373 1.28665 1.36689 1.26869 0.95439 1.04658 0.91318 0.85057 0.79486 0.75905 0.78406 1.17010 1.19562 1.19510 1.21418 0.94631 0.90078 1.54670 0.89647 1.18486 0.86841 0.83939 0.75720 1.90565 1.16011 1.87652 1.56622 1.45925 1.08914 1.03771 1.81060 1.17890 0.94176 0.82643 0.90692 0.91752 1.19360 0.94623 1.01514 0.96825 1.20199 0.97735 1.02159 0.97079 1.25821 1.03128 1.09082 0.96712 1.83789 1.08543 1.60826 1.10527 1.25408 1.04739 1.08634 0.95396 1.19965 0.94624 0.96005 0.97271 1.21127 1.00948 0.93911 0.96174 1.21191 0.91590 0.99207 1.00408 1.21046 0.92278 0.93698 0.99996 1.98361 1.69426 1.52842 1.83285 1.21193 1.01358 0.93513 0.96319 1.21000 0.92642 0.98460 0.99826 0.91744 0.77236 0.84047 0.79369 0.81958 0.84233 0.82888 0.82935 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.65 11.83 21.84 0.26 -49.39 16 2 C 0.03 1.78 5.50 85.30 0.47 2.25 16 3 Si 0.99 40.60 29.56 68.60 2.03 42.63 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.57 -31.64 9.54 24.83 0.24 -31.40 16 8 H 0.09 4.25 7.85 -2.91 -0.02 4.22 16 9 C 0.55 30.60 7.70 86.36 0.67 31.26 16 10 O -0.62 -40.47 14.68 -4.32 -0.06 -40.53 16 11 N -0.74 -31.80 4.56 -454.00 -2.07 -33.87 16 12 C 0.25 9.53 2.46 43.50 0.11 9.64 16 13 H 0.06 2.79 7.38 -2.38 -0.02 2.77 16 14 C -0.11 -3.92 4.80 -20.92 -0.10 -4.02 16 15 C -0.14 -4.65 9.95 21.22 0.21 -4.44 16 16 C -0.21 -5.98 11.23 66.72 0.75 -5.23 16 17 S 0.10 2.80 23.34 -56.49 -1.32 1.48 16 18 C -0.21 -6.81 10.43 66.72 0.70 -6.12 16 19 C -0.08 -2.28 4.94 -19.86 -0.10 -2.38 16 20 C -0.10 -2.62 9.67 22.27 0.22 -2.41 16 21 C -0.11 -2.29 9.83 22.29 0.22 -2.07 16 22 C -0.04 -0.95 6.32 22.32 0.14 -0.81 16 23 Cl -0.07 -1.31 28.96 -2.72 -0.08 -1.39 16 24 C -0.11 -2.30 9.83 22.29 0.22 -2.08 16 25 C -0.10 -2.56 8.96 22.26 0.20 -2.36 16 26 H 0.27 15.00 8.29 -92.71 -0.77 14.24 16 27 H 0.39 14.54 6.85 -92.71 -0.63 13.90 16 28 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.16 5.03 8.03 -2.91 -0.02 5.01 16 31 H 0.14 3.26 8.04 -2.91 -0.02 3.24 16 32 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.14 3.22 6.92 -2.91 -0.02 3.20 16 Total: -1.00 -73.04 330.98 3.20 -69.84 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.52 Total: 31.39 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.93 Total: -20.15 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -1.81 Total: -83.26 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.06 Total: -40.53 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -73.04 3.20 -69.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153660648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.986 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds