Wall clock time and date at job start Sat Apr 11 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86794 * 119.99852 * 2 1 4 4 H 1.48505 * 109.47173 * 270.00091 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99760 * 3 2 1 6 6 H 1.48502 * 109.47352 * 149.99948 * 3 2 1 7 7 C 1.38802 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99884 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99698 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99689 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46732 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00138 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99709 * 180.02562 * 11 10 9 14 14 C 1.40118 * 120.00054 * 174.46505 * 13 11 10 15 15 C 1.38723 * 120.07318 * 335.18545 * 14 13 11 16 16 C 1.38378 * 119.95968 * 179.76593 * 15 14 13 17 17 F 1.35099 * 119.94863 * 180.25448 * 16 15 14 18 18 C 1.38472 * 120.11128 * 0.51743 * 16 15 14 19 19 C 1.38250 * 120.15633 * 359.74250 * 18 16 15 20 20 C 1.38529 * 120.03281 * 359.97438 * 19 18 16 21 21 O 1.36024 * 120.05158 * 179.97438 * 20 19 18 22 22 C 1.42898 * 117.00398 * 0.02677 * 21 20 19 23 23 F 1.39901 * 109.46663 * 299.99885 * 22 21 20 24 24 F 1.39898 * 109.47224 * 59.99423 * 22 21 20 25 25 H 0.96995 * 119.99981 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47317 * 60.00029 * 10 9 7 27 27 H 1.09007 * 109.47078 * 299.99714 * 10 9 7 28 28 H 0.97001 * 119.99758 * 354.46283 * 13 11 10 29 29 H 1.08004 * 120.02192 * 0.02728 * 15 14 13 30 30 H 1.08003 * 119.92600 * 179.71974 * 18 16 15 31 31 H 1.08000 * 119.98373 * 179.97438 * 19 18 16 32 32 H 1.08997 * 109.47399 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5732 -3.2324 0.0002 12 8 6.3442 -2.2961 -0.0003 13 7 6.0459 -4.4946 -0.0001 14 6 7.4226 -4.7271 -0.1170 15 6 8.2372 -3.7854 -0.7287 16 6 9.5973 -4.0153 -0.8386 17 9 10.3911 -3.0958 -1.4298 18 6 10.1454 -5.1887 -0.3485 19 6 9.3372 -6.1328 0.2572 20 6 7.9757 -5.9065 0.3758 21 8 7.1801 -6.8353 0.9711 22 6 7.8155 -8.0214 1.4522 23 9 8.4341 -8.6839 0.3865 24 9 8.7764 -7.6801 2.4099 25 1 -0.4850 0.8400 -0.0004 26 1 3.6435 -3.4317 -0.8895 27 1 3.6441 -3.4313 0.8905 28 1 5.4329 -5.2420 0.0807 29 1 7.8107 -2.8715 -1.1152 30 1 11.2066 -5.3670 -0.4399 31 1 9.7675 -7.0472 0.6381 32 1 7.0695 -8.6762 1.9027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159253675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:22 Heat of formation + Delta-G solvation = -192.195573 kcal Electronic energy + Delta-G solvation = -23880.755791 eV Core-core repulsion = 19518.442641 eV Total energy + Delta-G solvation = -4362.313150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.043 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79010 -48.97269 -47.77411 -40.94398 -39.33322 -37.40923 -34.83167 -32.49922 -31.10134 -30.16577 -28.63885 -26.44869 -25.68464 -23.75689 -22.64401 -20.77002 -19.54489 -19.05858 -18.35416 -18.05228 -17.82762 -17.06649 -16.27788 -16.05929 -15.95156 -15.64156 -15.24281 -15.03724 -14.89820 -14.35162 -14.28985 -14.08959 -14.03210 -13.89871 -13.84727 -13.46370 -12.87494 -12.85044 -12.62287 -12.41507 -11.97258 -11.65569 -11.32824 -11.05713 -10.75119 -10.65598 -9.92309 -9.71488 -9.06179 -8.89531 -8.60817 -8.18935 -7.01042 -6.34696 -4.08125 0.79833 0.86290 2.06125 2.51617 2.59888 3.01047 3.07654 3.29163 3.30888 3.45817 3.50354 3.84625 4.06614 4.18690 4.27419 4.36790 4.48333 4.59139 4.85095 4.94987 5.04389 5.17459 5.34918 5.58639 5.61731 5.71528 5.85694 5.91778 6.16649 6.24564 6.73868 7.22241 7.88129 8.09560 8.35664 9.10981 10.74414 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003115 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.041296 B = 8987.279693 C =10165.677728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.090 0.910 9 S -0.136 6.136 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.494 6.494 13 N -0.667 5.667 14 C 0.184 3.816 15 C -0.142 4.142 16 C 0.104 3.896 17 F -0.133 7.133 18 C -0.143 4.143 19 C -0.140 4.140 20 C 0.057 3.943 21 O -0.319 6.319 22 C 0.414 3.586 23 F -0.199 7.199 24 F -0.197 7.197 25 H 0.272 0.728 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.418 0.582 29 H 0.172 0.828 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.567 -18.819 1.595 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.108 0.892 9 S 0.090 5.910 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.366 6.366 13 N -0.313 5.313 14 C 0.087 3.913 15 C -0.163 4.163 16 C 0.084 3.916 17 F -0.112 7.112 18 C -0.163 4.163 19 C -0.159 4.159 20 C 0.011 3.989 21 O -0.237 6.237 22 C 0.324 3.676 23 F -0.180 7.180 24 F -0.179 7.179 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.255 0.745 29 H 0.189 0.811 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.436 -17.078 1.595 25.181 hybrid contribution -0.664 -0.737 -0.017 0.992 sum 17.772 -17.815 1.577 25.213 Atomic orbital electron populations 1.69933 1.05914 1.27876 1.47739 1.24705 0.94453 0.98973 0.93074 0.86748 0.81887 0.83295 0.80002 1.19131 1.19837 1.15914 1.22287 0.88006 0.97635 1.59195 0.89236 1.84836 1.09659 0.99044 1.97472 1.23292 0.92480 1.05270 1.06461 1.20603 0.91310 0.81473 0.74660 1.90683 1.58301 1.42014 1.45650 1.43555 1.04935 1.09765 1.73048 1.16721 0.84606 0.92083 0.97893 1.21333 0.91722 1.02179 1.01062 1.17401 0.88247 0.87876 0.98061 1.91519 1.73229 1.64990 1.81453 1.20865 1.01138 0.92907 1.01384 1.21115 0.91090 1.01281 1.02397 1.18436 0.89859 0.90486 1.00105 1.86575 1.36489 1.27849 1.72784 1.23378 0.84541 0.83211 0.76517 1.93104 1.85155 1.80908 1.58881 1.93109 1.67673 1.92657 1.64486 0.91841 0.87762 0.87841 0.74504 0.81120 0.84071 0.83786 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.97 55.49 0.78 -25.23 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.30 27.74 -169.99 -4.71 16.59 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.30 18.55 -107.50 -1.99 -5.30 16 10 C -0.12 -2.24 6.16 36.01 0.22 -2.01 16 11 C 0.53 8.86 7.66 -10.98 -0.08 8.77 16 12 O -0.49 -9.84 13.03 5.55 0.07 -9.77 16 13 N -0.67 -8.59 5.29 -9.75 -0.05 -8.64 16 14 C 0.18 2.41 6.45 -83.51 -0.54 1.87 16 15 C -0.14 -2.01 8.70 -39.35 -0.34 -2.36 16 16 C 0.10 1.33 7.29 -39.44 -0.29 1.04 16 17 F -0.13 -1.79 17.26 2.25 0.04 -1.75 16 18 C -0.14 -1.49 10.02 -39.49 -0.40 -1.89 16 19 C -0.14 -1.42 8.26 -39.47 -0.33 -1.75 16 20 C 0.06 0.63 6.50 -39.09 -0.25 0.38 16 21 O -0.32 -2.84 9.84 -19.82 -0.20 -3.03 16 22 C 0.41 2.44 5.98 101.05 0.60 3.04 16 23 F -0.20 -1.42 15.58 2.25 0.04 -1.39 16 24 F -0.20 -1.52 15.59 2.25 0.04 -1.49 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 28 H 0.42 4.12 8.34 -40.82 -0.34 3.78 16 29 H 0.17 2.76 5.79 -52.48 -0.30 2.46 16 30 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.14 1.24 5.09 -52.49 -0.27 0.97 16 32 H 0.18 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -33.38 308.38 -4.72 -38.10 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.18 Total: 1.79 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.19 Total: -4.53 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.72 Total: -33.87 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.12 Total: -12.80 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.99 Total: -5.30 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.38 -4.72 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159253675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.099 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds