Wall clock time and date at job start Sat Apr 11 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86794 * 119.99852 * 2 1 4 4 H 1.48505 * 109.47173 * 270.00091 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99760 * 3 2 1 6 6 H 1.48502 * 109.47352 * 149.99948 * 3 2 1 7 7 C 1.38802 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99884 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99698 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99689 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46732 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00138 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99709 * 180.02562 * 11 10 9 14 14 C 1.40118 * 120.00054 * 174.46505 * 13 11 10 15 15 C 1.38723 * 120.07318 * 335.18545 * 14 13 11 16 16 C 1.38378 * 119.95968 * 179.76593 * 15 14 13 17 17 F 1.35099 * 119.94863 * 180.25448 * 16 15 14 18 18 C 1.38472 * 120.11128 * 0.51743 * 16 15 14 19 19 C 1.38250 * 120.15633 * 359.74250 * 18 16 15 20 20 C 1.38529 * 120.03281 * 359.97438 * 19 18 16 21 21 O 1.36024 * 120.05158 * 179.97438 * 20 19 18 22 22 C 1.42898 * 117.00398 * 0.02677 * 21 20 19 23 23 F 1.39901 * 109.46663 * 299.99885 * 22 21 20 24 24 F 1.39898 * 109.47224 * 59.99423 * 22 21 20 25 25 H 0.96995 * 119.99981 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47317 * 60.00029 * 10 9 7 27 27 H 1.09007 * 109.47078 * 299.99714 * 10 9 7 28 28 H 0.97001 * 119.99758 * 354.46283 * 13 11 10 29 29 H 1.08004 * 120.02192 * 0.02728 * 15 14 13 30 30 H 1.08003 * 119.92600 * 179.71974 * 18 16 15 31 31 H 1.08000 * 119.98373 * 179.97438 * 19 18 16 32 32 H 1.08997 * 109.47399 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5732 -3.2324 0.0002 12 8 6.3442 -2.2961 -0.0003 13 7 6.0459 -4.4946 -0.0001 14 6 7.4226 -4.7271 -0.1170 15 6 8.2372 -3.7854 -0.7287 16 6 9.5973 -4.0153 -0.8386 17 9 10.3911 -3.0958 -1.4298 18 6 10.1454 -5.1887 -0.3485 19 6 9.3372 -6.1328 0.2572 20 6 7.9757 -5.9065 0.3758 21 8 7.1801 -6.8353 0.9711 22 6 7.8155 -8.0214 1.4522 23 9 8.4341 -8.6839 0.3865 24 9 8.7764 -7.6801 2.4099 25 1 -0.4850 0.8400 -0.0004 26 1 3.6435 -3.4317 -0.8895 27 1 3.6441 -3.4313 0.8905 28 1 5.4329 -5.2420 0.0807 29 1 7.8107 -2.8715 -1.1152 30 1 11.2066 -5.3670 -0.4399 31 1 9.7675 -7.0472 0.6381 32 1 7.0695 -8.6762 1.9027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159253675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:22 Heat of formation + Delta-G solvation = -215.000920 kcal Electronic energy + Delta-G solvation = -23881.744705 eV Core-core repulsion = 19518.442641 eV Total energy + Delta-G solvation = -4363.302064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.043 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.29901 -49.97136 -48.28830 -41.97594 -40.37727 -38.27524 -35.98897 -34.67469 -32.26630 -31.12622 -29.80056 -27.86041 -27.02838 -24.72897 -23.52273 -21.99352 -20.37487 -19.96326 -19.64864 -18.87865 -18.76928 -18.28678 -17.28136 -17.21293 -17.03791 -16.78997 -16.63722 -16.43956 -15.87894 -15.62860 -15.23396 -14.97638 -14.95754 -14.88947 -14.63974 -14.62124 -14.50324 -13.96121 -13.59538 -13.35910 -13.08540 -13.04887 -12.97334 -12.71997 -12.51596 -11.88530 -11.73651 -11.17524 -11.04350 -10.56399 -9.87880 -9.15772 -8.99927 -8.52004 -6.23261 -0.14532 -0.07745 0.91310 1.31390 1.34544 1.40598 1.46998 1.51941 1.93745 2.24105 2.35733 2.54622 2.65572 2.86641 3.11072 3.41289 3.56632 3.60132 3.71306 3.81564 4.00985 4.11768 4.17900 4.37651 4.45378 4.69401 4.86488 4.98632 5.12709 5.35092 5.70539 5.82775 6.11966 6.15855 6.87889 6.93392 8.60268 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003115 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.041296 B = 8987.279693 C =10165.677728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.066 0.934 9 S -0.171 6.171 10 C -0.110 4.110 11 C 0.538 3.462 12 O -0.532 6.532 13 N -0.647 5.647 14 C 0.161 3.839 15 C -0.157 4.157 16 C 0.086 3.914 17 F -0.142 7.142 18 C -0.126 4.126 19 C -0.138 4.138 20 C 0.070 3.930 21 O -0.323 6.323 22 C 0.408 3.592 23 F -0.205 7.205 24 F -0.207 7.207 25 H 0.277 0.723 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.434 0.566 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.082 -20.926 2.268 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.084 0.916 9 S 0.056 5.944 10 C -0.260 4.260 11 C 0.326 3.674 12 O -0.408 6.408 13 N -0.293 5.293 14 C 0.064 3.936 15 C -0.179 4.179 16 C 0.066 3.934 17 F -0.121 7.121 18 C -0.145 4.145 19 C -0.157 4.157 20 C 0.024 3.976 21 O -0.241 6.241 22 C 0.319 3.681 23 F -0.187 7.187 24 F -0.189 7.189 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.273 0.727 29 H 0.162 0.838 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 19.954 -19.243 2.271 27.814 hybrid contribution -1.051 -0.338 -0.211 1.124 sum 18.903 -19.580 2.060 27.294 Atomic orbital electron populations 1.70011 1.07283 1.29031 1.49078 1.25526 0.95224 1.02162 0.92911 0.85907 0.80730 0.79800 0.80191 1.18759 1.18438 1.16011 1.22449 0.90078 0.96803 1.58285 0.91581 1.84765 1.06670 1.05354 1.97628 1.23246 0.94030 1.00364 1.08398 1.20253 0.90293 0.82309 0.74581 1.90689 1.58819 1.43474 1.47816 1.43173 1.05495 1.08811 1.71866 1.16745 0.84208 0.93120 0.99495 1.21197 0.92755 1.01814 1.02101 1.17549 0.87790 0.88822 0.99267 1.91492 1.73284 1.65523 1.81780 1.21181 1.02618 0.91422 0.99295 1.21401 0.90665 1.01815 1.01845 1.18449 0.90343 0.90048 0.98745 1.86599 1.36789 1.28363 1.72300 1.24303 0.85326 0.82434 0.76001 1.93094 1.85428 1.80791 1.59375 1.93092 1.68329 1.92723 1.64784 0.91354 0.85895 0.85860 0.72666 0.83753 0.81185 0.81758 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 13.97 21.65 0.30 -54.62 16 2 C 0.05 2.73 5.50 84.86 0.47 3.19 16 3 Si 0.91 44.24 27.74 68.60 1.90 46.15 16 4 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 7 C -0.53 -29.87 10.04 67.95 0.68 -29.19 16 8 H 0.07 3.91 8.03 -2.91 -0.02 3.89 16 9 S -0.17 -8.28 18.55 -56.49 -1.05 -9.33 16 10 C -0.11 -3.84 6.16 71.24 0.44 -3.40 16 11 C 0.54 17.63 7.66 87.66 0.67 18.30 16 12 O -0.53 -21.51 13.03 -3.06 -0.04 -21.55 16 13 N -0.65 -15.81 5.29 -303.16 -1.60 -17.41 16 14 C 0.16 4.04 6.45 38.18 0.25 4.29 16 15 C -0.16 -4.50 8.70 22.42 0.19 -4.31 16 16 C 0.09 2.14 7.29 22.36 0.16 2.30 16 17 F -0.14 -3.82 17.26 44.97 0.78 -3.04 16 18 C -0.13 -2.33 10.02 22.33 0.22 -2.11 16 19 C -0.14 -2.41 8.26 22.34 0.18 -2.23 16 20 C 0.07 1.40 6.50 22.59 0.15 1.54 16 21 O -0.32 -4.68 9.84 -93.82 -0.92 -5.61 16 22 C 0.41 3.23 5.98 113.37 0.68 3.90 16 23 F -0.21 -2.21 15.58 44.97 0.70 -1.51 16 24 F -0.21 -2.49 15.59 44.97 0.70 -1.79 16 25 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16 27 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.43 7.59 8.34 -92.71 -0.77 6.82 16 29 H 0.14 4.92 5.79 -2.91 -0.02 4.90 16 30 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.17 2.22 5.09 -2.91 -0.01 2.21 16 32 H 0.24 -0.67 8.14 -2.39 -0.02 -0.69 16 Total: -1.00 -73.89 308.38 5.27 -68.62 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.40 Total: 7.79 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.10 Total: -7.70 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.30 Total: -72.03 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.96 Total: -27.16 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 2.18 Total: -6.34 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.15 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.05 Total: -9.33 kcal Total: -73.89 5.27 -68.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159253675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.376 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds