Wall clock time and date at job start Sat Apr 11 2020 00:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00006 * 2 1 4 4 H 1.48501 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47494 * 300.00642 * 3 2 1 6 6 H 1.48506 * 109.46796 * 60.00920 * 3 2 1 7 7 C 1.38816 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99492 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47275 * 327.06407 * 10 9 7 12 12 C 1.50706 * 109.46846 * 87.06749 * 10 9 7 13 13 C 1.38240 * 119.99790 * 39.72247 * 12 10 9 14 14 C 1.38237 * 119.99338 * 179.78765 * 13 12 10 15 15 C 1.38234 * 120.00170 * 0.44746 * 14 13 12 16 16 C 1.38229 * 119.99914 * 359.80319 * 15 14 13 17 17 C 1.38231 * 120.00527 * 359.97438 * 16 15 14 18 18 C 1.50705 * 109.46752 * 207.06129 * 10 9 7 19 19 C 1.38214 * 120.00413 * 332.31186 * 18 10 9 20 20 C 1.38334 * 120.00314 * 179.97438 * 19 18 10 21 21 Cl 1.73594 * 120.00300 * 180.02562 * 20 19 18 22 22 C 1.38375 * 119.99680 * 359.97438 * 20 19 18 23 23 C 1.38178 * 119.99961 * 0.02562 * 22 20 19 24 24 C 1.38338 * 119.99426 * 152.56684 * 18 10 9 25 25 Cl 1.73597 * 120.00096 * 0.02562 * 24 18 10 26 26 H 0.97001 * 120.00011 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00301 * 0.02562 * 9 7 2 28 28 H 1.08000 * 120.00341 * 359.97438 * 13 12 10 29 29 H 1.08000 * 119.99467 * 180.27090 * 14 13 12 30 30 H 1.07997 * 119.99957 * 179.83612 * 15 14 13 31 31 H 1.08001 * 120.00057 * 180.02562 * 16 15 14 32 32 H 1.07997 * 120.00939 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.00082 * 359.97438 * 19 18 10 34 34 H 1.07997 * 119.99808 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.99912 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2123 6 1 1.8916 2.3963 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9866 -3.5403 -0.5592 12 6 2.3721 -4.0555 1.4185 13 6 1.4340 -3.8606 2.4149 14 6 1.7205 -4.2304 3.7157 15 6 2.9486 -4.7863 4.0217 16 6 3.8886 -4.9763 3.0262 17 6 3.6004 -4.6109 1.7246 18 6 1.2134 -4.7245 -0.6470 19 6 -0.1652 -4.6325 -0.6088 20 6 -0.9405 -5.6123 -1.2027 21 17 -2.6719 -5.4964 -1.1554 22 6 -0.3358 -6.6841 -1.8353 23 6 1.0424 -6.7760 -1.8734 24 6 1.8179 -5.7993 -1.2739 25 17 3.5493 -5.9185 -1.3155 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 0.4761 -3.4224 2.1766 29 1 0.9859 -4.0822 4.4934 30 1 3.1734 -5.0727 5.0385 31 1 4.8479 -5.4111 3.2652 32 1 4.3349 -4.7589 0.9468 33 1 -0.6372 -3.7957 -0.1154 34 1 -0.9410 -7.4492 -2.2986 35 1 1.5144 -7.6128 -2.3668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183734538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:47 Heat of formation + Delta-G solvation = 51.047864 kcal Electronic energy + Delta-G solvation = -21908.520922 eV Core-core repulsion = 18537.277798 eV Total energy + Delta-G solvation = -3371.243124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 321.038 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81178 -38.44927 -36.65509 -36.12238 -35.20442 -32.45242 -30.64714 -30.34092 -30.06336 -29.54143 -25.63450 -23.69013 -22.29156 -22.08798 -21.86577 -19.96244 -17.81543 -16.78376 -16.42895 -15.75239 -15.60915 -14.90607 -14.58527 -14.22253 -13.94361 -13.91034 -13.75115 -12.99216 -12.91134 -12.80538 -12.42523 -12.25299 -12.08453 -11.84996 -11.31538 -11.06049 -11.00906 -10.91183 -10.86378 -10.71762 -10.61761 -10.30447 -10.11479 -9.80254 -9.15689 -8.81204 -8.43079 -8.38310 -8.15758 -7.14128 -5.86640 -3.17135 1.05327 1.27573 1.90005 1.94504 2.09833 2.32576 3.39627 3.46221 3.47832 3.57310 4.30214 4.48918 4.79091 4.82512 5.11875 5.28616 5.35668 5.36797 5.45266 5.53896 5.58571 5.73264 5.77606 5.88496 5.98969 6.09627 6.11848 6.20399 6.30509 6.46132 6.50182 6.65642 6.70866 6.94897 7.01779 7.29270 7.53840 7.65309 8.29438 9.42173 9.90096 10.26200 11.35412 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.006002 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.959625 B = 4664.196905 C = 5906.590478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.712 5.712 10 C 0.243 3.757 11 H 0.081 0.919 12 C -0.078 4.078 13 C -0.084 4.084 14 C -0.128 4.128 15 C -0.133 4.133 16 C -0.130 4.130 17 C -0.114 4.114 18 C -0.043 4.043 19 C -0.082 4.082 20 C -0.028 4.028 21 Cl -0.068 7.068 22 C -0.112 4.112 23 C -0.101 4.101 24 C -0.029 4.029 25 Cl -0.063 7.063 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -15.443 -0.054 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.132 3.868 11 H 0.098 0.902 12 C -0.082 4.082 13 C -0.102 4.102 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.148 4.148 17 C -0.133 4.133 18 C -0.045 4.045 19 C -0.101 4.101 20 C -0.055 4.055 21 Cl -0.039 7.039 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.056 4.056 25 Cl -0.034 7.034 26 H 0.066 0.934 27 H 0.222 0.778 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.630 -15.245 -0.080 15.332 hybrid contribution 0.119 1.034 0.096 1.045 sum 1.749 -14.211 0.016 14.318 Atomic orbital electron populations 1.69652 1.05081 1.25865 1.57027 1.24723 0.95518 0.97692 1.02319 0.86117 0.78939 0.83933 0.77209 1.20427 1.21772 1.21768 1.19242 0.91162 0.83525 1.43301 0.90850 1.42532 1.05713 0.99124 1.87947 1.18187 0.94335 0.84391 0.89891 0.90162 1.20908 0.93636 0.95970 0.97661 1.20968 0.99831 0.97188 0.92222 1.21077 0.96971 0.99995 0.96584 1.20967 0.94377 1.01190 0.98585 1.20975 0.98938 1.01552 0.93345 1.21032 0.96758 0.99255 0.96230 1.20133 0.93673 0.94707 0.96031 1.20965 0.92349 0.98137 0.98686 1.20955 0.84877 0.97469 1.02190 1.98369 1.10158 1.98035 1.97349 1.20874 0.94061 0.97769 1.00432 1.20875 0.92682 0.98557 0.99907 1.20797 0.84930 0.97277 1.02616 1.98348 1.10188 1.97655 1.97251 0.93353 0.77766 0.86095 0.86852 0.87093 0.87007 0.86705 0.83370 0.84474 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -16.82 4.25 -55.68 -0.24 -17.06 16 10 C 0.24 4.75 2.26 -70.23 -0.16 4.59 16 11 H 0.08 1.62 6.80 -51.93 -0.35 1.26 16 12 C -0.08 -1.46 4.93 -104.62 -0.52 -1.98 16 13 C -0.08 -1.56 9.32 -39.58 -0.37 -1.93 16 14 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 15 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 16 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 17 C -0.11 -1.91 9.25 -39.58 -0.37 -2.27 16 18 C -0.04 -0.74 5.02 -104.59 -0.52 -1.27 16 19 C -0.08 -1.39 9.00 -39.55 -0.36 -1.74 16 20 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 21 Cl -0.07 -0.93 28.96 -51.86 -1.50 -2.43 16 22 C -0.11 -1.39 9.83 -39.55 -0.39 -1.77 16 23 C -0.10 -1.26 9.83 -39.55 -0.39 -1.65 16 24 C -0.03 -0.43 6.31 -39.49 -0.25 -0.68 16 25 Cl -0.06 -0.87 25.76 -51.86 -1.34 -2.21 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.39 9.46 5.52 -40.82 -0.23 9.23 16 28 H 0.12 2.38 7.71 -52.49 -0.40 1.97 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 1.78 6.86 -52.49 -0.36 1.42 16 33 H 0.15 2.72 6.19 -52.48 -0.32 2.40 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -28.60 330.04 -10.73 -39.33 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.33 Total: 9.93 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -5.01 Total: -23.43 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.49 Total: -43.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -2.84 Total: -4.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.60 -10.73 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183734538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.376 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds