Wall clock time and date at job start Sat Apr 11 2020 00:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00006 * 2 1 4 4 H 1.48501 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47494 * 300.00642 * 3 2 1 6 6 H 1.48506 * 109.46796 * 60.00920 * 3 2 1 7 7 C 1.38816 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99492 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47275 * 327.06407 * 10 9 7 12 12 C 1.50706 * 109.46846 * 87.06749 * 10 9 7 13 13 C 1.38240 * 119.99790 * 39.72247 * 12 10 9 14 14 C 1.38237 * 119.99338 * 179.78765 * 13 12 10 15 15 C 1.38234 * 120.00170 * 0.44746 * 14 13 12 16 16 C 1.38229 * 119.99914 * 359.80319 * 15 14 13 17 17 C 1.38231 * 120.00527 * 359.97438 * 16 15 14 18 18 C 1.50705 * 109.46752 * 207.06129 * 10 9 7 19 19 C 1.38214 * 120.00413 * 332.31186 * 18 10 9 20 20 C 1.38334 * 120.00314 * 179.97438 * 19 18 10 21 21 Cl 1.73594 * 120.00300 * 180.02562 * 20 19 18 22 22 C 1.38375 * 119.99680 * 359.97438 * 20 19 18 23 23 C 1.38178 * 119.99961 * 0.02562 * 22 20 19 24 24 C 1.38338 * 119.99426 * 152.56684 * 18 10 9 25 25 Cl 1.73597 * 120.00096 * 0.02562 * 24 18 10 26 26 H 0.97001 * 120.00011 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00301 * 0.02562 * 9 7 2 28 28 H 1.08000 * 120.00341 * 359.97438 * 13 12 10 29 29 H 1.08000 * 119.99467 * 180.27090 * 14 13 12 30 30 H 1.07997 * 119.99957 * 179.83612 * 15 14 13 31 31 H 1.08001 * 120.00057 * 180.02562 * 16 15 14 32 32 H 1.07997 * 120.00939 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.00082 * 359.97438 * 19 18 10 34 34 H 1.07997 * 119.99808 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.99912 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2123 6 1 1.8916 2.3963 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9866 -3.5403 -0.5592 12 6 2.3721 -4.0555 1.4185 13 6 1.4340 -3.8606 2.4149 14 6 1.7205 -4.2304 3.7157 15 6 2.9486 -4.7863 4.0217 16 6 3.8886 -4.9763 3.0262 17 6 3.6004 -4.6109 1.7246 18 6 1.2134 -4.7245 -0.6470 19 6 -0.1652 -4.6325 -0.6088 20 6 -0.9405 -5.6123 -1.2027 21 17 -2.6719 -5.4964 -1.1554 22 6 -0.3358 -6.6841 -1.8353 23 6 1.0424 -6.7760 -1.8734 24 6 1.8179 -5.7993 -1.2739 25 17 3.5493 -5.9185 -1.3155 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 0.4761 -3.4224 2.1766 29 1 0.9859 -4.0822 4.4934 30 1 3.1734 -5.0727 5.0385 31 1 4.8479 -5.4111 3.2652 32 1 4.3349 -4.7589 0.9468 33 1 -0.6372 -3.7957 -0.1154 34 1 -0.9410 -7.4492 -2.2986 35 1 1.5144 -7.6128 -2.3668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183734538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:46 Heat of formation + Delta-G solvation = 38.207015 kcal Electronic energy + Delta-G solvation = -21909.077743 eV Core-core repulsion = 18537.277798 eV Total energy + Delta-G solvation = -3371.799945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 321.038 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06654 -39.68844 -37.78238 -37.29988 -36.72987 -34.23365 -31.86618 -31.63476 -31.40127 -31.10056 -27.20171 -25.37432 -23.61638 -23.31358 -23.13479 -21.32591 -19.54857 -18.14958 -17.75207 -17.10854 -16.82995 -16.41056 -16.01367 -15.66491 -15.50802 -15.14178 -14.98440 -14.63706 -14.20531 -14.14758 -13.71703 -13.43577 -13.27457 -13.16315 -12.89882 -12.86512 -12.67389 -12.22829 -12.07762 -12.03586 -11.98802 -11.83746 -11.70064 -11.50951 -11.07883 -10.03408 -9.69118 -9.61408 -9.45598 -9.07775 -7.96543 -5.26091 -0.09898 0.12787 0.61306 0.64263 0.96751 1.19064 1.45612 1.46161 1.55683 2.41625 2.53415 3.00154 3.38371 3.56803 3.68698 3.83666 4.05090 4.16004 4.22803 4.30157 4.32185 4.38320 4.45978 4.56449 4.76261 4.81424 4.89399 4.95773 5.12856 5.19291 5.23205 5.30991 5.49487 5.55868 5.68488 5.71964 5.93438 6.23233 6.26519 7.31830 7.98578 8.25594 9.26324 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.006002 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.959625 B = 4664.196905 C = 5906.590478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.722 5.722 10 C 0.246 3.754 11 H 0.070 0.930 12 C -0.094 4.094 13 C -0.110 4.110 14 C -0.134 4.134 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.064 4.064 19 C -0.101 4.101 20 C -0.034 4.034 21 Cl -0.063 7.063 22 C -0.097 4.097 23 C -0.088 4.088 24 C -0.036 4.036 25 Cl -0.055 7.055 26 H 0.251 0.749 27 H 0.377 0.623 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.174 0.826 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -17.898 0.116 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.363 5.363 10 C 0.136 3.864 11 H 0.088 0.912 12 C -0.097 4.097 13 C -0.128 4.128 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.066 4.066 19 C -0.121 4.121 20 C -0.061 4.061 21 Cl -0.034 7.034 22 C -0.116 4.116 23 C -0.107 4.107 24 C -0.063 4.063 25 Cl -0.026 7.026 26 H 0.060 0.940 27 H 0.213 0.787 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.192 0.808 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.254 -17.744 0.092 18.041 hybrid contribution -0.345 1.637 0.069 1.675 sum 2.909 -16.107 0.161 16.368 Atomic orbital electron populations 1.69797 1.06346 1.25958 1.59227 1.25425 0.96285 1.00581 1.03496 0.85185 0.78338 0.80328 0.76611 1.19255 1.22008 1.22186 1.19518 0.91243 0.84818 1.41186 0.90984 1.42618 1.05475 1.00026 1.88214 1.18195 0.93762 0.83587 0.90815 0.91195 1.20751 0.94723 0.97552 0.96688 1.20911 0.99198 0.98940 0.93784 1.21334 0.98358 0.99708 0.95844 1.21376 0.93241 0.99588 1.00328 1.21390 1.00299 1.00247 0.92371 1.21200 0.95974 0.99361 0.97641 1.19915 0.93574 0.95443 0.97625 1.20762 0.92708 0.98471 1.00124 1.21063 0.85108 0.97643 1.02286 1.98368 1.09640 1.98068 1.97338 1.21300 0.94422 0.97195 0.98663 1.21304 0.92524 0.98446 0.98393 1.20936 0.85670 0.97188 1.02510 1.98346 1.09452 1.97563 1.97203 0.93987 0.78743 0.88750 0.85194 0.83535 0.83569 0.85816 0.86246 0.80832 0.80613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.11 13.06 21.65 0.28 -57.83 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 7 C -0.24 -13.03 9.93 84.03 0.83 -12.20 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.72 -36.03 4.25 -330.07 -1.40 -37.43 16 10 C 0.25 9.98 2.26 43.50 0.10 10.07 16 11 H 0.07 2.91 6.80 -2.39 -0.02 2.89 16 12 C -0.09 -3.58 4.93 -19.86 -0.10 -3.68 16 13 C -0.11 -4.25 9.32 22.27 0.21 -4.04 16 14 C -0.13 -4.30 10.05 22.27 0.22 -4.07 16 15 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 16 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 17 C -0.12 -3.98 9.25 22.27 0.21 -3.78 16 18 C -0.06 -2.24 5.02 -19.84 -0.10 -2.34 16 19 C -0.10 -3.57 9.00 22.29 0.20 -3.37 16 20 C -0.03 -0.98 6.32 22.33 0.14 -0.84 16 21 Cl -0.06 -1.70 28.96 -2.72 -0.08 -1.78 16 22 C -0.10 -2.14 9.83 22.29 0.22 -1.92 16 23 C -0.09 -1.93 9.83 22.29 0.22 -1.71 16 24 C -0.04 -1.02 6.31 22.33 0.14 -0.88 16 25 Cl -0.05 -1.43 25.76 -2.72 -0.07 -1.50 16 26 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.38 19.93 5.52 -92.71 -0.51 19.42 16 28 H 0.09 4.06 7.71 -2.91 -0.02 4.04 16 29 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 30 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.12 3.68 6.86 -2.91 -0.02 3.66 16 33 H 0.12 4.85 6.19 -2.91 -0.02 4.83 16 34 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.28 330.04 4.59 -59.70 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.62 Total: 28.83 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.21 Total: -38.40 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -1.12 Total: -95.26 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.15 Total: -3.28 kcal Total: -64.28 4.59 -59.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183734538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.905 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds