Wall clock time and date at job start Sat Apr 11 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46987 * 2 1 4 4 H 1.08998 * 109.46975 * 54.80467 * 3 2 1 5 5 C 1.50707 * 109.47026 * 174.80703 * 3 2 1 6 6 H 1.07996 * 120.00084 * 120.00230 * 5 3 2 7 7 C 1.37875 * 119.99580 * 299.99673 * 5 3 2 8 8 N 1.31514 * 120.00515 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47137 * 120.00379 * 9 7 5 12 12 H 1.48500 * 109.46803 * 239.99937 * 9 7 5 13 13 N 1.46499 * 109.47085 * 294.80150 * 3 2 1 14 14 S 1.65600 * 119.99992 * 145.86055 * 13 3 2 15 15 O 1.42103 * 106.39957 * 47.33080 * 14 13 3 16 16 O 1.42093 * 106.40211 * 180.24967 * 14 13 3 17 17 C 1.76203 * 107.21860 * 293.79346 * 14 13 3 18 18 C 1.38249 * 119.98215 * 114.07443 * 17 14 13 19 19 C 1.38185 * 120.03511 * 179.72448 * 18 17 14 20 20 C 1.38492 * 119.99867 * 0.54784 * 19 18 17 21 21 F 1.35103 * 120.01115 * 179.74818 * 20 19 18 22 22 C 1.38404 * 119.96535 * 359.72519 * 20 19 18 23 23 C 1.38340 * 119.96316 * 359.97438 * 22 20 19 24 24 Cl 1.73601 * 120.00246 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.46961 * 175.91728 * 1 2 3 26 26 H 1.09003 * 109.47210 * 55.92149 * 1 2 3 27 27 H 1.08997 * 109.47393 * 295.91825 * 1 2 3 28 28 H 1.09005 * 109.47407 * 119.99786 * 2 1 3 29 29 H 1.09000 * 109.47493 * 239.99703 * 2 1 3 30 30 H 0.96996 * 120.00330 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00026 * 325.86919 * 13 3 2 32 32 H 1.07993 * 119.97817 * 359.97438 * 18 17 14 33 33 H 1.08000 * 119.99445 * 180.27011 * 19 18 17 34 34 H 1.08002 * 120.02097 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6026 1.9825 0.8398 5 6 3.5415 1.4445 0.1286 6 1 4.1492 1.8882 -0.6460 7 6 4.1392 0.8799 1.2353 8 7 3.3992 0.3392 2.1785 9 14 6.0004 0.8829 1.3951 10 1 6.5980 1.5476 0.2093 11 1 6.3906 1.6197 2.6240 12 1 6.4922 -0.5157 1.4795 13 7 1.6564 2.0961 -1.2538 14 16 1.2803 3.7087 -1.2657 15 8 2.3083 4.3658 -0.5371 16 8 0.9502 4.0339 -2.6089 17 6 -0.1984 3.9064 -0.3280 18 6 -0.1731 4.6102 0.8617 19 6 -1.3333 4.7707 1.5950 20 6 -2.5198 4.2168 1.1441 21 9 -3.6531 4.3693 1.8634 22 6 -2.5439 3.5074 -0.0441 23 6 -1.3828 3.3529 -0.7803 24 17 -1.4118 2.4628 -2.2704 25 1 -0.3633 -1.0251 -0.0732 26 1 -0.3634 0.5758 -0.8512 27 1 -0.3634 0.4492 0.9243 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.8198 -0.0584 2.9569 31 1 1.6227 1.5841 -2.0770 32 1 0.7529 5.0381 1.2160 33 1 -1.3137 5.3243 2.5221 34 1 -3.4688 3.0754 -0.3969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186424584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:53 Heat of formation + Delta-G solvation = -102.321470 kcal Electronic energy + Delta-G solvation = -23569.346305 eV Core-core repulsion = 19762.727069 eV Total energy + Delta-G solvation = -3806.619236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.29357 -39.22432 -36.91459 -36.50499 -35.94414 -35.27258 -32.19970 -31.30349 -30.84007 -30.64807 -26.64953 -23.49082 -23.34687 -23.02601 -20.23086 -19.22396 -18.27206 -17.41747 -17.04841 -16.87736 -16.23209 -15.95628 -15.32525 -15.14823 -14.57676 -14.23445 -13.88220 -13.78640 -13.66507 -13.42955 -13.01125 -12.89129 -11.94450 -11.79346 -11.65018 -11.59844 -11.50268 -11.43240 -11.23444 -11.16937 -10.94436 -10.80306 -10.67791 -10.20529 -9.87049 -9.79422 -9.74071 -9.36695 -9.09347 -8.44728 -8.27892 -6.08410 -4.14677 0.39048 0.83144 0.95873 1.72983 2.99699 3.29209 3.37539 3.43551 3.65984 3.90286 4.19688 4.35756 4.42493 4.60662 4.80690 5.18216 5.21500 5.27540 5.42369 5.60287 5.79537 5.81807 6.07326 6.15786 6.28280 6.42216 6.46987 6.77631 6.90612 7.07681 7.54575 7.62487 7.86179 8.06743 8.22275 8.89004 9.51592 10.96009 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.005404 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.213929 B = 5179.659978 C = 5453.787849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.281 3.719 4 H 0.040 0.960 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.285 1.285 13 N -1.093 6.093 14 S 2.686 3.314 15 O -0.941 6.941 16 O -0.968 6.968 17 C -0.677 4.677 18 C 0.025 3.975 19 C -0.171 4.171 20 C 0.159 3.841 21 F -0.128 7.128 22 C -0.171 4.171 23 C 0.085 3.915 24 Cl -0.028 7.028 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.106 0.894 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.408 0.592 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 4.726 -2.769 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.177 3.823 4 H 0.058 0.942 5 C -0.557 4.557 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.855 5.855 14 S 2.770 3.230 15 O -0.931 6.931 16 O -0.958 6.958 17 C -0.760 4.760 18 C 0.005 3.995 19 C -0.190 4.190 20 C 0.139 3.861 21 F -0.106 7.106 22 C -0.191 4.191 23 C 0.057 3.943 24 Cl 0.002 6.998 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.241 0.759 32 H 0.182 0.818 33 H 0.168 0.832 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.459 5.342 -2.904 12.973 hybrid contribution -0.035 -0.642 0.418 0.767 sum -11.495 4.700 -2.486 12.665 Atomic orbital electron populations 1.21925 0.99106 0.99671 1.00401 1.21863 0.91913 0.99308 1.03409 1.18576 0.94923 0.90257 0.78520 0.94199 1.21556 0.91170 1.37257 1.05751 0.91618 1.24892 0.98500 0.94987 0.95481 1.69844 1.34954 1.38814 1.09592 0.86454 0.85304 0.77508 0.78273 1.19595 1.20938 1.21099 1.55509 1.82785 1.28594 1.18601 1.02290 0.73491 0.73966 0.73243 1.93610 1.52069 1.73599 1.73773 1.93571 1.84927 1.83460 1.33835 1.31466 1.19815 1.11902 1.12835 1.20933 0.99002 0.90186 0.89331 1.21374 0.91415 1.03614 1.02646 1.17660 0.82484 0.96180 0.89781 1.91549 1.48902 1.93486 1.76684 1.20982 0.99223 1.03676 0.95235 1.20098 0.93154 0.92633 0.88449 1.98447 1.98498 1.72585 1.30318 0.94514 0.93787 0.94008 0.87566 0.93936 0.92783 0.75863 0.81785 0.83185 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.85 37.15 0.37 -2.35 16 2 C -0.13 -2.64 5.37 -26.73 -0.14 -2.78 16 3 C 0.28 6.32 2.14 -69.08 -0.15 6.17 16 4 H 0.04 0.96 7.92 -51.93 -0.41 0.55 16 5 C -0.52 -13.40 8.84 -34.44 -0.30 -13.71 16 6 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.56 16 8 N -0.89 -23.73 11.29 55.43 0.63 -23.10 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -1.09 -20.98 4.69 -5.88 -0.03 -21.01 16 14 S 2.69 50.39 4.99 -107.50 -0.54 49.86 16 15 O -0.94 -20.44 16.70 -57.17 -0.95 -21.39 16 16 O -0.97 -18.63 16.44 -57.17 -0.94 -19.57 16 17 C -0.68 -10.93 5.83 -39.54 -0.23 -11.16 16 18 C 0.02 0.36 9.55 -39.60 -0.38 -0.02 16 19 C -0.17 -2.09 10.03 -39.51 -0.40 -2.48 16 20 C 0.16 1.97 7.30 -39.43 -0.29 1.68 16 21 F -0.13 -1.51 17.27 2.25 0.04 -1.47 16 22 C -0.17 -2.16 9.81 -39.48 -0.39 -2.54 16 23 C 0.08 1.25 6.30 -39.51 -0.25 1.00 16 24 Cl -0.03 -0.40 24.90 -51.86 -1.29 -1.69 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.70 5.97 -51.93 -0.31 0.39 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.41 6.96 8.83 -34.47 -0.30 6.65 16 32 H 0.16 2.25 7.33 -52.49 -0.38 1.86 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -29.33 320.10 -8.91 -38.25 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.38 Total: 4.15 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -2.25 Total: -24.64 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.60 Total: -44.12 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.89 Total: -40.96 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 50.39 SS G_CDS: -0.54 Total: 49.86 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.29 Total: -1.69 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.33 -8.91 -38.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186424584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.076 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds