Wall clock time and date at job start Sat Apr 11 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46987 * 2 1 4 4 H 1.08998 * 109.46975 * 54.80467 * 3 2 1 5 5 C 1.50707 * 109.47026 * 174.80703 * 3 2 1 6 6 H 1.07996 * 120.00084 * 120.00230 * 5 3 2 7 7 C 1.37875 * 119.99580 * 299.99673 * 5 3 2 8 8 N 1.31514 * 120.00515 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99683 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47137 * 120.00379 * 9 7 5 12 12 H 1.48500 * 109.46803 * 239.99937 * 9 7 5 13 13 N 1.46499 * 109.47085 * 294.80150 * 3 2 1 14 14 S 1.65600 * 119.99992 * 145.86055 * 13 3 2 15 15 O 1.42103 * 106.39957 * 47.33080 * 14 13 3 16 16 O 1.42093 * 106.40211 * 180.24967 * 14 13 3 17 17 C 1.76203 * 107.21860 * 293.79346 * 14 13 3 18 18 C 1.38249 * 119.98215 * 114.07443 * 17 14 13 19 19 C 1.38185 * 120.03511 * 179.72448 * 18 17 14 20 20 C 1.38492 * 119.99867 * 0.54784 * 19 18 17 21 21 F 1.35103 * 120.01115 * 179.74818 * 20 19 18 22 22 C 1.38404 * 119.96535 * 359.72519 * 20 19 18 23 23 C 1.38340 * 119.96316 * 359.97438 * 22 20 19 24 24 Cl 1.73601 * 120.00246 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.46961 * 175.91728 * 1 2 3 26 26 H 1.09003 * 109.47210 * 55.92149 * 1 2 3 27 27 H 1.08997 * 109.47393 * 295.91825 * 1 2 3 28 28 H 1.09005 * 109.47407 * 119.99786 * 2 1 3 29 29 H 1.09000 * 109.47493 * 239.99703 * 2 1 3 30 30 H 0.96996 * 120.00330 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00026 * 325.86919 * 13 3 2 32 32 H 1.07993 * 119.97817 * 359.97438 * 18 17 14 33 33 H 1.08000 * 119.99445 * 180.27011 * 19 18 17 34 34 H 1.08002 * 120.02097 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6026 1.9825 0.8398 5 6 3.5415 1.4445 0.1286 6 1 4.1492 1.8882 -0.6460 7 6 4.1392 0.8799 1.2353 8 7 3.3992 0.3392 2.1785 9 14 6.0004 0.8829 1.3951 10 1 6.5980 1.5476 0.2093 11 1 6.3906 1.6197 2.6240 12 1 6.4922 -0.5157 1.4795 13 7 1.6564 2.0961 -1.2538 14 16 1.2803 3.7087 -1.2657 15 8 2.3083 4.3658 -0.5371 16 8 0.9502 4.0339 -2.6089 17 6 -0.1984 3.9064 -0.3280 18 6 -0.1731 4.6102 0.8617 19 6 -1.3333 4.7707 1.5950 20 6 -2.5198 4.2168 1.1441 21 9 -3.6531 4.3693 1.8634 22 6 -2.5439 3.5074 -0.0441 23 6 -1.3828 3.3529 -0.7803 24 17 -1.4118 2.4628 -2.2704 25 1 -0.3633 -1.0251 -0.0732 26 1 -0.3634 0.5758 -0.8512 27 1 -0.3634 0.4492 0.9243 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.8198 -0.0584 2.9569 31 1 1.6227 1.5841 -2.0770 32 1 0.7529 5.0381 1.2160 33 1 -1.3137 5.3243 2.5221 34 1 -3.4688 3.0754 -0.3969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186424584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:52 Heat of formation + Delta-G solvation = -121.000131 kcal Electronic energy + Delta-G solvation = -23570.156273 eV Core-core repulsion = 19762.727069 eV Total energy + Delta-G solvation = -3807.429204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.25734 -40.30110 -38.33548 -37.84536 -37.56426 -36.84794 -34.11916 -32.36616 -32.21290 -31.93635 -28.49890 -24.88102 -24.55077 -24.37954 -21.91901 -20.63035 -19.45279 -18.71224 -18.69552 -18.14096 -17.84538 -17.00918 -16.92609 -16.27708 -16.17214 -15.46717 -15.30350 -15.05492 -14.89261 -14.73521 -14.55398 -14.30152 -13.57362 -13.35688 -13.12558 -13.06086 -13.01100 -12.78077 -12.64116 -12.60049 -12.57845 -12.47304 -12.05449 -12.00106 -11.58525 -11.52478 -11.37403 -10.45893 -10.40706 -10.16090 -10.00817 -8.06774 -6.18484 -0.76053 -0.47558 -0.20571 0.62258 1.43276 1.47328 1.57562 1.89395 2.21086 2.48573 2.75179 2.88883 3.19767 3.23293 3.58294 3.73822 3.98275 4.15214 4.36988 4.48866 4.56745 4.63355 4.71440 4.75842 4.78199 4.90196 5.16226 5.38410 5.41708 5.42574 5.72429 5.83571 6.04481 6.31353 6.46174 6.87978 7.49693 8.95554 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.005404 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.213929 B = 5179.659978 C = 5453.787849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.289 3.711 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.276 1.276 13 N -1.093 6.093 14 S 2.696 3.304 15 O -0.979 6.979 16 O -0.977 6.977 17 C -0.691 4.691 18 C 0.011 3.989 19 C -0.161 4.161 20 C 0.166 3.834 21 F -0.119 7.119 22 C -0.163 4.163 23 C 0.074 3.926 24 Cl -0.028 7.028 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.416 0.584 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 4.736 -2.438 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.184 3.816 4 H 0.042 0.958 5 C -0.576 4.576 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.854 5.854 14 S 2.784 3.216 15 O -0.969 6.969 16 O -0.967 6.967 17 C -0.778 4.778 18 C -0.009 4.009 19 C -0.180 4.180 20 C 0.146 3.854 21 F -0.098 7.098 22 C -0.183 4.183 23 C 0.045 3.955 24 Cl 0.001 6.999 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.251 0.749 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.115 5.338 -2.614 14.399 hybrid contribution 0.384 -0.584 0.343 0.778 sum -12.731 4.754 -2.271 13.778 Atomic orbital electron populations 1.21827 0.96360 1.01167 1.00894 1.21695 0.94359 0.97797 1.02146 1.18279 0.93008 0.91119 0.79184 0.95799 1.21852 0.93180 1.37090 1.05506 0.93076 1.25479 1.01695 0.95009 0.95479 1.69933 1.35981 1.39167 1.09797 0.85720 0.81633 0.77723 0.77854 1.20001 1.20814 1.20204 1.55287 1.83425 1.28662 1.18060 1.01579 0.73737 0.73255 0.72980 1.93560 1.54638 1.74303 1.74432 1.93552 1.85225 1.83353 1.34558 1.30935 1.18705 1.14377 1.13783 1.21060 1.00095 0.90474 0.89223 1.21649 0.90388 1.02812 1.03149 1.17701 0.82662 0.95450 0.89564 1.91580 1.48455 1.93296 1.76428 1.21250 0.99441 1.02844 0.94773 1.20180 0.93343 0.93093 0.88868 1.98444 1.98481 1.72573 1.30370 0.92657 0.92186 0.94438 0.90362 0.93613 0.92698 0.74872 0.81853 0.80108 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.85 71.98 0.71 -4.21 16 2 C -0.12 -5.03 5.37 30.59 0.16 -4.87 16 3 C 0.29 13.14 2.14 44.25 0.09 13.23 16 4 H 0.02 1.17 7.92 -2.39 -0.02 1.16 16 5 C -0.54 -28.28 8.84 25.60 0.23 -28.05 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -48.71 11.29 21.45 0.24 -48.46 16 9 Si 0.94 42.91 29.54 68.60 2.03 44.93 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 N -1.09 -42.19 4.69 -172.51 -0.81 -43.00 16 14 S 2.70 101.97 4.99 -56.49 -0.28 101.69 16 15 O -0.98 -43.71 16.70 -128.00 -2.14 -45.84 16 16 O -0.98 -37.57 16.44 -128.00 -2.10 -39.67 16 17 C -0.69 -21.74 5.83 22.30 0.13 -21.61 16 18 C 0.01 0.30 9.55 22.26 0.21 0.51 16 19 C -0.16 -3.50 10.03 22.32 0.22 -3.28 16 20 C 0.17 3.58 7.30 22.37 0.16 3.74 16 21 F -0.12 -2.38 17.27 44.97 0.78 -1.60 16 22 C -0.16 -3.63 9.81 22.33 0.22 -3.41 16 23 C 0.07 2.03 6.30 22.32 0.14 2.17 16 24 Cl -0.03 -0.76 24.90 -2.72 -0.07 -0.83 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.81 5.97 -2.39 -0.01 1.80 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 3.77 5.95 -2.38 -0.01 3.75 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.42 14.20 8.83 -96.75 -0.85 13.34 16 32 H 0.16 4.48 7.33 -2.91 -0.02 4.46 16 33 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -62.47 320.10 0.67 -61.80 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.30 Total: 15.08 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 2.73 Total: -44.09 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -0.57 Total: -91.46 kcal Atomic # 8 Polarization: -81.27 SS G_CDS: -4.24 Total: -85.52 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 101.97 SS G_CDS: -0.28 Total: 101.69 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.83 kcal Total: -62.47 0.67 -61.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186424584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.205 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds