Wall clock time and date at job start Sat Apr 11 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47333 * 2 1 4 4 H 1.09000 * 109.46614 * 55.12725 * 3 2 1 5 5 C 1.50700 * 109.46870 * 175.12332 * 3 2 1 6 6 H 1.08001 * 119.99724 * 120.00102 * 5 3 2 7 7 C 1.37875 * 120.00534 * 299.99854 * 5 3 2 8 8 N 1.31517 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00295 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46997 * 60.00414 * 9 7 5 11 11 H 1.48498 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47036 * 300.00395 * 9 7 5 13 13 N 1.46489 * 109.46976 * 295.12616 * 3 2 1 14 14 S 1.65599 * 119.99992 * 145.51908 * 13 3 2 15 15 O 1.42102 * 106.40278 * 48.02038 * 14 13 3 16 16 O 1.42105 * 106.40287 * 180.94273 * 14 13 3 17 17 C 1.76199 * 107.21885 * 294.47885 * 14 13 3 18 18 C 1.38231 * 119.99785 * 114.54265 * 17 14 13 19 19 C 1.38204 * 120.03785 * 179.73095 * 18 17 14 20 20 C 1.38387 * 120.03624 * 0.54610 * 19 18 17 21 21 Cl 1.73599 * 119.99777 * 179.75025 * 20 19 18 22 22 C 1.38288 * 119.99935 * 359.72272 * 20 19 18 23 23 C 1.38438 * 120.00504 * 294.81877 * 17 14 13 24 24 F 1.35102 * 120.01695 * 0.02562 * 23 17 14 25 25 H 1.08992 * 109.47717 * 295.72523 * 1 2 3 26 26 H 1.08997 * 109.47400 * 175.71186 * 1 2 3 27 27 H 1.09006 * 109.46765 * 55.72279 * 1 2 3 28 28 H 1.09005 * 109.46635 * 119.99721 * 2 1 3 29 29 H 1.09001 * 109.47767 * 239.99815 * 2 1 3 30 30 H 0.96998 * 120.00062 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00222 * 325.51586 * 13 3 2 32 32 H 1.08004 * 119.98033 * 359.97438 * 18 17 14 33 33 H 1.08002 * 119.98211 * 180.24993 * 19 18 17 34 34 H 1.07996 * 120.01924 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9809 0.8431 5 6 3.5422 1.4441 0.1208 6 1 4.1459 1.8892 -0.6563 7 6 4.1459 0.8774 1.2232 8 7 3.4107 0.3359 2.1698 9 14 6.0078 0.8801 1.3732 10 1 6.5024 2.2803 1.3737 11 1 6.4032 0.2146 2.6405 12 1 6.5980 0.1470 0.2246 13 7 1.6499 2.0984 -1.2504 14 16 1.2657 3.7091 -1.2557 15 8 2.3007 4.3709 -0.5415 16 8 0.9145 4.0335 -2.5939 17 6 -0.2003 3.8988 -0.2969 18 6 -0.1641 4.6100 0.8879 19 6 -1.3147 4.7640 1.6379 20 6 -2.5020 4.1968 1.2093 21 17 -3.9452 4.3854 2.1554 22 6 -2.5388 3.4803 0.0270 23 6 -1.3873 3.3308 -0.7271 24 9 -1.4219 2.6305 -1.8819 25 1 -0.3634 0.4460 0.9257 26 1 -0.3634 -1.0247 -0.0768 27 1 -0.3633 0.5788 -0.8492 28 1 1.8932 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 3.8354 -0.0631 2.9452 31 1 1.6167 1.5892 -2.0753 32 1 0.7632 5.0489 1.2258 33 1 -1.2862 5.3232 2.5614 34 1 -3.4653 3.0379 -0.3080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186438399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:00 Heat of formation + Delta-G solvation = -104.586629 kcal Electronic energy + Delta-G solvation = -23571.949025 eV Core-core repulsion = 19765.231565 eV Total energy + Delta-G solvation = -3806.717461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 321.039 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.25483 -39.23606 -36.84083 -36.68084 -35.99471 -35.32031 -32.21563 -31.39369 -30.75318 -30.67956 -26.66925 -23.66628 -23.23238 -23.02073 -20.25624 -19.26718 -18.26370 -17.30154 -17.01339 -16.89698 -16.26983 -15.87472 -15.48535 -15.27833 -14.57410 -14.36575 -13.88801 -13.71760 -13.51419 -13.14655 -13.05464 -12.91322 -12.05016 -11.95771 -11.79128 -11.68137 -11.55737 -11.44350 -11.33281 -11.22944 -10.98670 -10.79742 -10.74605 -10.25405 -9.89981 -9.84480 -9.76768 -9.40972 -9.08237 -8.45176 -8.31708 -6.09451 -4.16076 0.34569 0.87022 0.91885 1.63831 2.99472 3.32189 3.35522 3.40603 3.62836 3.88473 4.16614 4.33053 4.41361 4.61785 4.87382 5.13975 5.20617 5.22109 5.42549 5.70024 5.74730 5.79411 6.04247 6.11480 6.25107 6.40528 6.43322 6.74182 6.87363 7.04686 7.52033 7.60197 7.84234 8.04361 8.20333 8.86869 9.50200 10.95038 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.004920 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.337919 B = 5689.395335 C = 6123.765171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.281 3.719 4 H 0.041 0.959 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.277 1.277 13 N -1.095 6.095 14 S 2.689 3.311 15 O -0.938 6.938 16 O -0.973 6.973 17 C -0.705 4.705 18 C 0.025 3.975 19 C -0.143 4.143 20 C 0.037 3.963 21 Cl -0.052 7.052 22 C -0.172 4.172 23 C 0.214 3.786 24 F -0.113 7.113 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.409 0.591 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.639 5.396 -0.860 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.059 0.941 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.857 5.857 14 S 2.773 3.227 15 O -0.927 6.927 16 O -0.963 6.963 17 C -0.788 4.788 18 C 0.006 3.994 19 C -0.162 4.162 20 C 0.010 3.990 21 Cl -0.023 7.023 22 C -0.192 4.192 23 C 0.193 3.807 24 F -0.091 7.091 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.125 0.875 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.343 6.074 -0.843 13.782 hybrid contribution 0.065 -0.711 0.212 0.745 sum -12.278 5.362 -0.631 13.413 Atomic orbital electron populations 1.21875 0.99156 0.99693 1.00110 1.21881 0.91830 0.99363 1.03508 1.18583 0.94930 0.90216 0.78585 0.94130 1.21468 0.91069 1.37488 1.05960 0.91711 1.24887 0.98563 0.94904 0.95402 1.69826 1.35212 1.38573 1.09616 0.86561 0.85190 0.78515 0.77241 1.19944 1.21302 1.20214 1.55517 1.82574 1.28837 1.18732 1.02210 0.73554 0.73927 0.73047 1.93615 1.51523 1.73376 1.74234 1.93562 1.84693 1.83497 1.34528 1.31609 1.19697 1.13111 1.14377 1.20951 0.99142 0.90227 0.89120 1.21255 0.90830 1.02267 1.01888 1.20861 0.88716 0.97069 0.92345 1.98399 1.36553 1.96017 1.71312 1.20964 0.98986 1.03817 0.95401 1.16749 0.92760 0.89453 0.81753 1.91623 1.96939 1.75286 1.45293 0.93915 0.94341 0.94261 0.87479 0.93855 0.92630 0.75757 0.81737 0.83314 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.85 37.16 0.37 -2.34 16 2 C -0.13 -2.68 5.37 -26.73 -0.14 -2.82 16 3 C 0.28 6.37 2.15 -69.09 -0.15 6.22 16 4 H 0.04 0.98 7.88 -51.93 -0.41 0.57 16 5 C -0.52 -13.52 8.84 -34.44 -0.30 -13.82 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -23.76 11.30 55.43 0.63 -23.13 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -1.09 -21.35 4.83 -5.89 -0.03 -21.38 16 14 S 2.69 51.13 5.30 -107.50 -0.57 50.56 16 15 O -0.94 -20.35 16.72 -57.17 -0.96 -21.31 16 16 O -0.97 -19.55 17.42 -57.17 -1.00 -20.55 16 17 C -0.71 -11.49 5.78 -39.51 -0.23 -11.72 16 18 C 0.02 0.36 9.55 -39.60 -0.38 -0.02 16 19 C -0.14 -1.72 9.83 -39.54 -0.39 -2.11 16 20 C 0.04 0.45 6.32 -39.51 -0.25 0.20 16 21 Cl -0.05 -0.53 28.96 -51.86 -1.50 -2.03 16 22 C -0.17 -2.17 9.81 -39.48 -0.39 -2.55 16 23 C 0.21 3.23 7.21 -39.43 -0.28 2.95 16 24 F -0.11 -1.76 15.69 2.25 0.04 -1.73 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.65 7.05 -51.93 -0.37 0.28 16 28 H 0.11 2.57 5.96 -51.93 -0.31 2.26 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.41 7.10 8.83 -34.47 -0.30 6.79 16 32 H 0.17 2.23 7.33 -52.48 -0.38 1.85 16 33 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -29.73 324.77 -9.19 -38.92 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.43 Total: 4.42 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.24 Total: -24.44 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.60 Total: -44.52 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.95 Total: -41.86 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 51.13 SS G_CDS: -0.57 Total: 50.56 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.73 -9.19 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186438399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.668 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds