Wall clock time and date at job start Sat Apr 11 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34234 * 116.99771 * 269.99740 * 13 3 2 15 15 O 1.20824 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99896 * 180.02562 * 14 13 3 17 17 C 1.50697 * 109.46994 * 179.97438 * 16 14 13 18 18 C 1.33554 * 122.06812 * 124.73351 * 17 16 14 19 19 S 1.76251 * 108.25370 * 179.90891 * 18 17 16 20 20 C 1.76171 * 89.84830 * 0.29878 * 19 18 17 21 21 C 1.47871 * 125.47501 * 179.87024 * 20 19 18 22 22 C 1.46845 * 127.14347 * 359.65794 * 21 20 19 23 23 C 1.34306 * 106.01383 * 179.83549 * 22 21 20 24 24 O 1.34167 * 109.05509 * 0.43706 * 23 22 21 25 25 C 1.34031 * 110.79667 * 359.70862 * 24 23 22 26 26 N 1.30247 * 109.04919 * 359.82289 * 20 19 18 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 31 31 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 32 32 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46766 * 300.00081 * 16 14 13 34 34 H 1.09000 * 109.46689 * 60.00007 * 16 14 13 35 35 H 1.08005 * 125.87423 * 0.03126 * 18 17 16 36 36 H 1.08004 * 126.99315 * 359.97266 * 22 21 20 37 37 H 1.08001 * 125.47007 * 180.14496 * 23 22 21 38 38 H 1.07996 * 125.79490 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7254 1.2561 15 8 -0.2192 2.7369 0.2657 16 6 0.0075 3.4224 2.5086 17 6 -1.3402 4.0504 2.2629 18 6 -2.3977 3.7844 3.0340 19 16 -3.7701 4.7086 2.4267 20 6 -2.7524 5.3733 1.1516 21 6 -3.1932 6.3276 0.1116 22 6 -4.5382 6.8905 -0.0625 23 6 -4.4637 7.7057 -1.1272 24 8 -3.2132 7.6794 -1.6124 25 6 -2.4381 6.8618 -0.8863 26 7 -1.5490 4.8898 1.2727 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8770 0.4827 -2.1133 33 1 -0.0711 2.6983 3.3195 34 1 0.7246 4.1967 2.7811 35 1 -2.4093 3.1191 3.8847 36 1 -5.4095 6.6914 0.5439 37 1 -5.2806 8.2854 -1.5311 38 1 -1.3919 6.6607 -1.0635 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187924664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:50 Heat of formation + Delta-G solvation = -21.929891 kcal Electronic energy + Delta-G solvation = -24036.710547 eV Core-core repulsion = 20359.470506 eV Total energy + Delta-G solvation = -3677.240041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.63798 -40.25469 -39.17489 -35.95113 -33.88952 -33.56356 -32.00223 -31.69662 -29.89057 -28.45677 -27.61886 -25.31277 -22.96630 -22.01864 -21.91381 -20.86464 -19.73845 -19.05959 -18.44914 -17.53145 -17.05074 -16.55781 -16.23959 -15.84595 -15.66230 -15.40132 -14.63460 -14.45652 -14.15221 -13.65334 -13.47412 -13.28505 -13.10936 -12.88054 -12.72291 -12.42390 -12.07966 -11.94454 -11.64318 -11.52018 -11.35359 -11.18620 -10.74570 -10.54520 -10.02467 -9.85331 -9.73484 -9.58479 -9.51383 -9.43561 -9.17904 -9.04812 -8.63780 -8.30251 -6.21700 -4.23580 0.32533 1.17966 1.56285 1.59241 2.10734 2.78821 2.92972 2.97583 3.19143 3.31721 3.35124 3.67324 3.73719 4.27633 4.52661 4.57684 4.82251 4.98589 5.07904 5.13070 5.20969 5.42827 5.45612 5.51303 5.67530 5.82067 5.83931 5.91718 5.96860 6.01229 6.09889 6.47542 6.56986 6.68751 6.75609 6.79834 7.09400 7.41255 7.57327 7.68296 8.27745 8.66331 8.86564 9.35833 10.90381 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.003417 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.589414 B = 8191.966669 C = 9146.837382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.199 3.801 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.261 1.261 12 H -0.290 1.290 13 O -0.343 6.343 14 C 0.454 3.546 15 O -0.500 6.500 16 C -0.045 4.045 17 C 0.093 3.907 18 C -0.248 4.248 19 S 0.077 5.923 20 C 0.157 3.843 21 C -0.138 4.138 22 C -0.197 4.197 23 C -0.032 4.032 24 O -0.176 6.176 25 C 0.042 3.958 26 N -0.441 5.441 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.181 0.819 36 H 0.155 0.845 37 H 0.208 0.792 38 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.288 10.728 6.913 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.145 3.855 4 H 0.064 0.936 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.705 3.295 10 H -0.200 1.200 11 H -0.185 1.185 12 H -0.217 1.217 13 O -0.259 6.259 14 C 0.296 3.704 15 O -0.388 6.388 16 C -0.086 4.086 17 C -0.039 4.039 18 C -0.386 4.386 19 S 0.334 5.666 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.218 4.218 23 C -0.098 4.098 24 O -0.071 6.071 25 C -0.031 4.031 26 N -0.154 5.154 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.198 0.802 36 H 0.173 0.827 37 H 0.224 0.776 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -21.883 11.039 6.227 25.288 hybrid contribution 0.193 -1.222 -0.416 1.305 sum -21.690 9.817 5.811 24.507 Atomic orbital electron populations 1.21879 0.97023 0.99842 1.01743 1.22360 0.94284 0.99725 1.02139 1.20932 0.96199 0.87958 0.80419 0.93605 1.20810 0.87805 1.39746 1.07810 0.89500 1.24731 0.94928 0.95308 0.97357 1.69838 1.08483 1.44438 1.29805 0.87004 0.81050 0.80092 0.81316 1.19974 1.18531 1.21695 1.86485 1.34406 1.62604 1.42409 1.22934 0.80826 0.77217 0.89451 1.90635 1.55382 1.57426 1.35386 1.19892 0.92249 1.00362 0.96058 1.19451 0.96121 0.96608 0.91725 1.26619 0.94743 1.09067 1.08200 1.84730 1.15515 1.40538 1.25830 1.24677 0.90357 0.99275 0.97570 1.19074 0.94369 1.02730 0.98162 1.22742 0.96642 1.01410 1.00987 1.23882 0.85788 1.03122 0.97011 1.83941 1.20130 1.53747 1.49327 1.24481 0.97081 0.91155 0.90389 1.66351 1.18813 1.10842 1.19441 0.94068 0.93640 0.92645 0.91882 0.91263 0.92093 0.86483 0.86204 0.80177 0.82749 0.77572 0.76531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.57 37.16 0.32 -2.64 16 2 C -0.15 -3.37 5.15 -26.73 -0.14 -3.51 16 3 C 0.20 5.02 1.84 -27.88 -0.05 4.97 16 4 H 0.05 1.24 6.21 -51.93 -0.32 0.92 16 5 C -0.52 -15.08 9.48 -34.44 -0.33 -15.41 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.88 21.87 24.41 -169.99 -4.15 17.72 16 10 H -0.27 -6.53 6.83 56.52 0.39 -6.15 16 11 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 O -0.34 -7.75 9.81 -39.27 -0.39 -8.13 16 14 C 0.45 8.93 6.37 36.01 0.23 9.16 16 15 O -0.50 -11.06 12.56 -18.75 -0.24 -11.30 16 16 C -0.05 -0.64 6.28 -29.04 -0.18 -0.82 16 17 C 0.09 1.34 5.61 -84.39 -0.47 0.87 16 18 C -0.25 -2.86 11.01 29.09 0.32 -2.54 16 19 S 0.08 0.85 23.33 -107.50 -2.51 -1.65 16 20 C 0.16 2.17 7.50 -14.28 -0.11 2.06 16 21 C -0.14 -1.69 6.32 -103.26 -0.65 -2.34 16 22 C -0.20 -1.82 11.05 -37.49 -0.41 -2.23 16 23 C -0.03 -0.25 12.04 29.35 0.35 0.11 16 24 O -0.18 -1.81 10.54 6.80 0.07 -1.74 16 25 C 0.04 0.49 12.05 29.95 0.36 0.85 16 26 N -0.44 -7.05 9.63 -7.55 -0.07 -7.12 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.88 6.06 -51.93 -0.31 0.56 16 29 H 0.05 1.17 7.80 -51.93 -0.40 0.77 16 30 H 0.06 1.49 3.22 -51.93 -0.17 1.33 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.12 1.25 8.01 -51.93 -0.42 0.83 16 34 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.18 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.22 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -34.64 337.74 -6.47 -41.11 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.19 Total: 1.38 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.86 Total: -9.27 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.70 Total: -33.21 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.55 Total: -21.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.15 Total: 17.72 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.64 -6.47 -41.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187924664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.180 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds