Wall clock time and date at job start Sat Apr 11 2020 00:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34865 * 117.00111 * 89.99718 * 13 3 2 15 15 O 1.21595 * 120.00335 * 359.97438 * 14 13 3 16 16 C 1.46699 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.36122 * 125.47176 * 179.69105 * 16 14 13 18 18 Cl 1.73598 * 126.15362 * 0.02562 * 17 16 14 19 19 C 1.41678 * 107.69647 * 179.88410 * 17 16 14 20 20 C 1.40094 * 133.32792 * 180.12534 * 19 17 16 21 21 C 1.36439 * 119.83926 * 180.32072 * 20 19 17 22 22 C 1.38939 * 120.60863 * 359.95280 * 21 20 19 23 23 C 1.37670 * 120.64517 * 0.02875 * 22 21 20 24 24 C 1.39231 * 119.81489 * 359.97438 * 23 22 21 25 25 N 1.37496 * 133.12165 * 180.02562 * 24 23 22 26 26 C 1.46502 * 125.60305 * 359.97307 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.08080 * 0.27610 * 20 19 17 34 34 H 1.07997 * 119.69801 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.67592 * 180.02562 * 22 21 20 36 36 H 1.08001 * 120.09204 * 180.02562 * 23 22 21 37 37 H 1.09003 * 109.47257 * 270.00210 * 26 25 24 38 38 H 1.08995 * 109.47080 * 30.00630 * 26 25 24 39 39 H 1.09000 * 109.46824 * 150.00196 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4670 2.7285 -1.2559 15 8 -0.2293 2.7401 -0.2592 16 6 0.0141 3.4072 -2.4750 17 6 -1.1631 4.0759 -2.6159 18 17 -2.3810 4.2739 -1.3947 19 6 -1.2143 4.5840 -3.9374 20 6 -2.1615 5.3395 -4.6408 21 6 -1.9274 5.6816 -5.9407 22 6 -0.7559 5.2882 -6.5758 23 6 0.1902 4.5457 -5.9059 24 6 -0.0258 4.1843 -4.5788 25 7 0.7127 3.4661 -3.6681 26 6 2.0230 2.8611 -3.9201 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 -3.0750 5.6499 -4.1555 34 1 -2.6593 6.2637 -6.4809 35 1 -0.5860 5.5676 -7.6051 36 1 1.0978 4.2450 -6.4082 37 1 1.8887 1.8456 -4.2927 38 1 2.5595 3.4524 -4.6620 39 1 2.5955 2.8352 -2.9930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787079147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:39 Heat of formation + Delta-G solvation = -34.475013 kcal Electronic energy + Delta-G solvation = -24826.443194 eV Core-core repulsion = 21146.615449 eV Total energy + Delta-G solvation = -3679.827745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67636 -39.45897 -37.13448 -36.39435 -35.81939 -33.60660 -32.85769 -31.45146 -30.45259 -29.41356 -27.37645 -26.31545 -24.55652 -23.08136 -21.75930 -21.42916 -20.16807 -19.53135 -17.70799 -17.13445 -16.80232 -16.06015 -15.89167 -15.73008 -14.89200 -14.70525 -14.31839 -14.21879 -14.01727 -13.59785 -13.22198 -13.09495 -12.88707 -12.56926 -12.17221 -12.01540 -11.85850 -11.52774 -11.39454 -11.29094 -11.19199 -11.04192 -11.00179 -10.76865 -10.71373 -10.33231 -9.87923 -9.75661 -9.63351 -9.47718 -8.89808 -8.53725 -8.36121 -7.70732 -6.25850 -4.33922 0.62281 1.46772 1.96951 2.09045 2.85980 3.19042 3.23586 3.26985 3.41256 3.43515 3.72752 4.25265 4.45562 4.79291 4.86146 4.95829 5.05929 5.09639 5.25662 5.36525 5.41878 5.46723 5.61044 5.81584 5.97383 6.19134 6.23601 6.26369 6.33229 6.39942 6.44118 6.53199 6.78010 6.86506 6.91948 7.06114 7.09937 7.14156 7.52039 7.65145 7.82369 8.05792 8.46508 8.75698 9.31422 10.80775 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.003891 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.725658 B = 7193.696710 C = 8203.428548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.514 3.486 15 O -0.477 6.477 16 C 0.065 3.935 17 C -0.049 4.049 18 Cl -0.017 7.017 19 C -0.110 4.110 20 C -0.056 4.056 21 C -0.150 4.150 22 C -0.089 4.089 23 C -0.127 4.127 24 C 0.117 3.883 25 N -0.448 5.448 26 C 0.071 3.929 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 7.492 -15.639 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.356 3.644 15 O -0.364 6.364 16 C -0.045 4.045 17 C -0.084 4.084 18 Cl 0.011 6.989 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.169 4.169 22 C -0.108 4.108 23 C -0.147 4.147 24 C 0.007 3.993 25 N -0.129 5.129 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.245 7.176 -14.996 18.135 hybrid contribution 0.850 -0.159 0.369 0.940 sum -6.395 7.018 -14.626 17.438 Atomic orbital electron populations 1.21867 0.98228 0.99167 1.00848 1.22023 0.92725 0.99153 1.03392 1.20774 0.95086 0.88783 0.78259 0.93214 1.20977 0.89388 1.39392 1.06422 0.91414 1.24871 0.99233 0.94656 0.95037 1.69884 1.35447 1.37491 1.09381 0.86288 0.83801 0.77782 0.78355 1.20372 1.20899 1.19631 1.86558 1.33127 1.62635 1.44691 1.19609 0.81785 0.77418 0.85630 1.90912 1.55045 1.57453 1.33006 1.19325 0.93290 1.05240 0.86634 1.19905 0.92318 1.05148 0.91059 1.98355 1.51898 1.96063 1.52535 1.17845 0.96526 1.04824 0.92329 1.20364 0.97577 0.95542 0.93956 1.20602 0.98306 1.03091 0.94868 1.20875 0.93412 0.97042 0.99520 1.20059 1.01121 1.02612 0.90911 1.18280 0.91649 0.97313 0.92051 1.44125 1.17217 1.43452 1.08150 1.22348 0.80748 0.98384 1.05462 0.92629 0.94726 0.95024 0.87213 0.94021 0.92270 0.85589 0.85752 0.85478 0.85714 0.90401 0.89961 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.56 37.16 0.32 -2.80 16 2 C -0.13 -3.24 5.49 -26.73 -0.15 -3.39 16 3 C 0.22 5.65 2.25 -27.88 -0.06 5.59 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -13.91 8.90 -34.44 -0.31 -14.21 16 6 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.62 16 9 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 O -0.35 -7.89 7.13 -40.94 -0.29 -8.18 16 14 C 0.51 10.90 6.37 34.15 0.22 11.11 16 15 O -0.48 -10.99 12.58 -19.34 -0.24 -11.23 16 16 C 0.06 1.18 6.81 -82.25 -0.56 0.62 16 17 C -0.05 -0.83 6.72 -39.03 -0.26 -1.09 16 18 Cl -0.02 -0.29 27.68 -51.86 -1.44 -1.72 16 19 C -0.11 -1.61 6.16 -106.90 -0.66 -2.27 16 20 C -0.06 -0.65 10.06 -39.53 -0.40 -1.05 16 21 C -0.15 -1.43 9.97 -39.97 -0.40 -1.83 16 22 C -0.09 -0.81 10.01 -39.53 -0.40 -1.21 16 23 C -0.13 -1.36 9.98 -39.42 -0.39 -1.75 16 24 C 0.12 1.63 6.81 -83.97 -0.57 1.06 16 25 N -0.45 -6.88 3.23 -117.68 -0.38 -7.26 16 26 C 0.07 0.91 10.49 59.85 0.63 1.54 16 27 H 0.05 1.26 7.79 -51.93 -0.40 0.86 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 30 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.11 1.74 6.08 -51.93 -0.32 1.42 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -29.35 340.58 -9.34 -38.69 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.64 Total: 0.96 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.08 Total: -8.07 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.25 Total: -30.88 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.54 Total: -19.41 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.44 Total: -1.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.35 -9.34 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.218 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds