Wall clock time and date at job start Sat Apr 11 2020 00:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34865 * 117.00111 * 89.99718 * 13 3 2 15 15 O 1.21595 * 120.00335 * 359.97438 * 14 13 3 16 16 C 1.46699 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.36122 * 125.47176 * 179.69105 * 16 14 13 18 18 Cl 1.73598 * 126.15362 * 0.02562 * 17 16 14 19 19 C 1.41678 * 107.69647 * 179.88410 * 17 16 14 20 20 C 1.40094 * 133.32792 * 180.12534 * 19 17 16 21 21 C 1.36439 * 119.83926 * 180.32072 * 20 19 17 22 22 C 1.38939 * 120.60863 * 359.95280 * 21 20 19 23 23 C 1.37670 * 120.64517 * 0.02875 * 22 21 20 24 24 C 1.39231 * 119.81489 * 359.97438 * 23 22 21 25 25 N 1.37496 * 133.12165 * 180.02562 * 24 23 22 26 26 C 1.46502 * 125.60305 * 359.97307 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.08080 * 0.27610 * 20 19 17 34 34 H 1.07997 * 119.69801 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.67592 * 180.02562 * 22 21 20 36 36 H 1.08001 * 120.09204 * 180.02562 * 23 22 21 37 37 H 1.09003 * 109.47257 * 270.00210 * 26 25 24 38 38 H 1.08995 * 109.47080 * 30.00630 * 26 25 24 39 39 H 1.09000 * 109.46824 * 150.00196 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4670 2.7285 -1.2559 15 8 -0.2293 2.7401 -0.2592 16 6 0.0141 3.4072 -2.4750 17 6 -1.1631 4.0759 -2.6159 18 17 -2.3810 4.2739 -1.3947 19 6 -1.2143 4.5840 -3.9374 20 6 -2.1615 5.3395 -4.6408 21 6 -1.9274 5.6816 -5.9407 22 6 -0.7559 5.2882 -6.5758 23 6 0.1902 4.5457 -5.9059 24 6 -0.0258 4.1843 -4.5788 25 7 0.7127 3.4661 -3.6681 26 6 2.0230 2.8611 -3.9201 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 -3.0750 5.6499 -4.1555 34 1 -2.6593 6.2637 -6.4809 35 1 -0.5860 5.5676 -7.6051 36 1 1.0978 4.2450 -6.4082 37 1 1.8887 1.8456 -4.2927 38 1 2.5595 3.4524 -4.6620 39 1 2.5955 2.8352 -2.9930 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787079147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:39 Heat of formation + Delta-G solvation = -48.269934 kcal Electronic energy + Delta-G solvation = -24827.041386 eV Core-core repulsion = 21146.615449 eV Total energy + Delta-G solvation = -3680.425937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.79607 -41.11519 -38.14596 -37.75371 -37.46272 -35.53291 -33.92842 -33.39359 -31.37187 -30.56052 -29.28804 -27.35330 -26.02424 -24.85067 -22.75225 -22.65645 -21.77204 -21.08531 -19.17870 -18.68271 -18.16814 -17.54373 -17.37276 -16.96166 -16.49275 -16.27764 -15.44068 -15.41870 -14.94453 -14.92007 -14.76403 -14.49563 -14.19362 -14.08862 -13.64198 -13.35635 -13.24010 -13.07756 -12.98975 -12.82735 -12.80312 -12.57882 -12.24536 -12.14000 -12.07674 -11.89758 -11.76187 -11.49681 -11.35722 -10.85105 -10.64636 -10.55026 -9.38368 -8.74848 -8.28137 -6.45063 -0.51699 0.58151 0.83172 0.87473 1.41200 1.43171 1.53348 1.62667 1.89984 1.92349 2.39039 2.85857 3.02206 3.46406 3.65303 3.78410 4.06579 4.18381 4.30707 4.34216 4.36290 4.39893 4.45992 4.50868 4.54330 4.69404 4.80157 4.82528 5.03303 5.04628 5.17736 5.26902 5.31224 5.44707 5.48541 5.55988 5.62830 5.63592 5.88934 5.90833 6.05027 6.14446 6.57219 6.84022 7.25395 8.78718 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.003891 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.725658 B = 7193.696710 C = 8203.428548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 C 0.228 3.772 4 H 0.008 0.992 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.260 1.260 13 O -0.350 6.350 14 C 0.512 3.488 15 O -0.507 6.507 16 C 0.023 3.977 17 C -0.047 4.047 18 Cl -0.025 7.025 19 C -0.136 4.136 20 C -0.069 4.069 21 C -0.138 4.138 22 C -0.071 4.071 23 C -0.134 4.134 24 C 0.112 3.888 25 N -0.449 5.449 26 C 0.069 3.931 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.270 0.730 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 8.557 -19.366 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.184 1.184 13 O -0.267 6.267 14 C 0.356 3.644 15 O -0.396 6.396 16 C -0.086 4.086 17 C -0.083 4.083 18 Cl 0.004 6.996 19 C -0.140 4.140 20 C -0.088 4.088 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.155 4.155 24 C 0.002 3.998 25 N -0.131 5.131 26 C -0.070 4.070 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.861 8.247 -18.749 21.602 hybrid contribution 0.599 -0.349 1.343 1.511 sum -6.262 7.899 -17.406 20.114 Atomic orbital electron populations 1.21709 0.96589 1.00514 0.99904 1.21862 0.94108 0.98074 1.02483 1.20459 0.94730 0.89140 0.78199 0.97442 1.21275 0.90052 1.40016 1.07030 0.91216 1.25776 1.04072 0.93891 0.94393 1.70015 1.37441 1.37846 1.09820 0.85227 0.77833 0.77836 0.78798 1.20081 1.20254 1.18394 1.86568 1.34187 1.62991 1.42930 1.20118 0.80838 0.76814 0.86634 1.90878 1.55568 1.58698 1.34463 1.18943 0.94898 1.07905 0.86897 1.20222 0.91594 1.04540 0.91936 1.98341 1.52064 1.96014 1.53177 1.18088 0.98132 1.06370 0.91445 1.20622 0.97533 0.95586 0.95059 1.21085 0.99007 1.01732 0.93824 1.21442 0.92063 0.94444 1.01036 1.20489 1.02795 1.02720 0.89452 1.18735 0.91118 0.96914 0.93056 1.44193 1.17680 1.43789 1.07477 1.22439 0.79977 0.99657 1.04931 0.94430 0.92058 0.95075 0.89351 0.93402 0.92055 0.84705 0.82292 0.81391 0.83043 0.89648 0.86252 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.56 71.98 0.62 -5.22 16 2 C -0.13 -6.36 5.49 30.59 0.17 -6.19 16 3 C 0.23 12.18 2.25 29.85 0.07 12.25 16 4 H 0.01 0.47 7.16 -2.38 -0.02 0.46 16 5 C -0.55 -29.99 8.90 25.60 0.23 -29.76 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -51.60 11.29 21.45 0.24 -51.36 16 9 Si 0.98 41.91 29.54 68.60 2.03 43.93 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 13 O -0.35 -16.52 7.13 -57.78 -0.41 -16.93 16 14 C 0.51 23.03 6.37 70.03 0.45 23.48 16 15 O -0.51 -25.01 12.58 19.53 0.25 -24.76 16 16 C 0.02 0.87 6.81 39.83 0.27 1.14 16 17 C -0.05 -1.62 6.72 22.63 0.15 -1.47 16 18 Cl -0.02 -0.85 27.68 -2.72 -0.08 -0.93 16 19 C -0.14 -3.85 6.16 -21.34 -0.13 -3.98 16 20 C -0.07 -1.46 10.06 22.30 0.22 -1.23 16 21 C -0.14 -1.99 9.97 22.02 0.22 -1.77 16 22 C -0.07 -0.91 10.01 22.30 0.22 -0.68 16 23 C -0.13 -2.34 9.98 22.37 0.22 -2.11 16 24 C 0.11 2.91 6.81 39.13 0.27 3.18 16 25 N -0.45 -13.73 3.23 -526.24 -1.70 -15.43 16 26 C 0.07 1.75 10.49 127.77 1.34 3.09 16 27 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.03 1.37 6.06 -2.38 -0.01 1.35 16 30 H 0.09 4.82 5.95 -2.39 -0.01 4.81 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 33 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 38 H 0.12 2.03 8.12 -2.39 -0.02 2.01 16 39 H 0.08 2.67 6.08 -2.39 -0.01 2.66 16 Total: -1.00 -67.84 340.58 6.17 -61.67 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.08 Total: 11.63 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.76 Total: -7.83 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -1.46 Total: -66.79 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.17 Total: -41.69 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -67.84 6.17 -61.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.399 kcal (2) G-P(sol) polarization free energy of solvation -67.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds