Wall clock time and date at job start Sat Apr 11 2020 00:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34868 * 116.99661 * 270.00529 * 13 3 2 15 15 O 1.21597 * 120.00396 * 359.97438 * 14 13 3 16 16 C 1.46697 * 119.99648 * 180.02562 * 14 13 3 17 17 C 1.36125 * 125.47070 * 179.69028 * 16 14 13 18 18 Cl 1.73603 * 126.15108 * 359.97438 * 17 16 14 19 19 C 1.41676 * 107.69883 * 179.90092 * 17 16 14 20 20 C 1.40086 * 133.33077 * 180.14130 * 19 17 16 21 21 C 1.36448 * 119.83844 * 180.27097 * 20 19 17 22 22 C 1.38938 * 120.60904 * 359.96709 * 21 20 19 23 23 C 1.37671 * 120.64572 * 0.02562 * 22 21 20 24 24 C 1.39240 * 119.81352 * 0.02562 * 23 22 21 25 25 N 1.37489 * 133.11597 * 180.02562 * 24 23 22 26 26 C 1.46501 * 125.61193 * 359.96510 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 1.07999 * 120.08459 * 0.28438 * 20 19 17 34 34 H 1.07995 * 119.69587 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.67811 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.09415 * 179.97438 * 23 22 21 37 37 H 1.08999 * 109.47244 * 269.98431 * 26 25 24 38 38 H 1.09011 * 109.46614 * 29.97838 * 26 25 24 39 39 H 1.09000 * 109.47247 * 149.97572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4671 2.7284 1.2561 15 8 -0.2289 2.7407 0.2591 16 6 0.0143 3.4070 2.4752 17 6 -1.1576 4.0858 2.6126 18 17 -2.3676 4.2987 1.3860 19 6 -1.2131 4.5858 3.9370 20 6 -2.1600 5.3415 4.6403 21 6 -1.9254 5.6843 5.9400 22 6 -0.7544 5.2901 6.5753 23 6 0.1914 4.5469 5.9056 24 6 -0.0247 4.1856 4.5784 25 7 0.7131 3.4662 3.6682 26 6 2.0229 2.8603 3.9203 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 -3.0736 5.6518 4.1551 34 1 -2.6568 6.2673 6.4799 35 1 -0.5843 5.5695 7.6046 36 1 1.0987 4.2457 6.4080 37 1 2.8077 3.5747 3.6718 38 1 2.1003 2.5871 4.9728 39 1 2.1352 1.9681 3.3042 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787079150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:41 Heat of formation + Delta-G solvation = -34.399256 kcal Electronic energy + Delta-G solvation = -24826.138146 eV Core-core repulsion = 21146.313687 eV Total energy + Delta-G solvation = -3679.824460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67680 -39.45864 -37.13419 -36.39427 -35.81959 -33.60490 -32.85837 -31.45064 -30.45420 -29.41327 -27.37682 -26.31539 -24.55646 -23.08121 -21.75950 -21.43157 -20.16264 -19.54081 -17.70758 -17.13580 -16.77931 -16.08153 -15.89887 -15.72030 -14.89720 -14.69811 -14.31729 -14.21511 -14.01926 -13.59761 -13.19018 -13.14123 -12.88888 -12.55170 -12.18080 -12.01242 -11.87018 -11.53744 -11.37717 -11.27233 -11.18903 -11.08827 -11.00409 -10.75996 -10.69217 -10.33571 -9.88537 -9.76141 -9.63262 -9.46697 -8.90690 -8.53292 -8.36184 -7.70718 -6.25616 -4.33618 0.62260 1.46737 1.96916 2.09032 2.85918 3.18985 3.23761 3.27204 3.41633 3.43202 3.72740 4.25468 4.45512 4.78834 4.86088 4.95816 5.06040 5.09345 5.25431 5.36995 5.41965 5.47362 5.61055 5.81560 5.95869 6.18925 6.23525 6.26016 6.33214 6.39588 6.44085 6.53072 6.77715 6.86168 6.91685 7.06096 7.09564 7.13954 7.52279 7.65039 7.82563 8.05882 8.46633 8.76102 9.31729 10.81015 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.003890 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.337467 B = 7195.392765 C = 8200.388913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.514 3.486 15 O -0.477 6.477 16 C 0.065 3.935 17 C -0.049 4.049 18 Cl -0.017 7.017 19 C -0.110 4.110 20 C -0.056 4.056 21 C -0.150 4.150 22 C -0.089 4.089 23 C -0.127 4.127 24 C 0.117 3.883 25 N -0.448 5.448 26 C 0.071 3.929 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 7.353 15.703 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 O -0.270 6.270 14 C 0.356 3.644 15 O -0.364 6.364 16 C -0.045 4.045 17 C -0.084 4.084 18 Cl 0.011 6.989 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.169 4.169 22 C -0.108 4.108 23 C -0.147 4.147 24 C 0.007 3.993 25 N -0.129 5.129 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.326 7.048 15.055 18.166 hybrid contribution 0.876 -0.130 -0.380 0.964 sum -6.450 6.918 14.674 17.458 Atomic orbital electron populations 1.21869 0.98219 0.99180 1.00859 1.22030 0.92733 0.99161 1.03407 1.20775 0.95098 0.88760 0.78275 0.93196 1.20981 0.89396 1.39342 1.06412 0.91388 1.24876 0.99224 0.94693 0.95015 1.69885 1.35429 1.37512 1.09414 0.86288 0.83832 0.78634 0.77476 1.20344 1.20913 1.19659 1.86560 1.33219 1.62656 1.44573 1.19610 0.81768 0.77434 0.85630 1.90912 1.55118 1.57381 1.33006 1.19327 0.93318 1.05247 0.86606 1.19907 0.92491 1.05085 0.90944 1.98355 1.52523 1.95862 1.52111 1.17843 0.96543 1.04877 0.92260 1.20364 0.97598 0.95497 0.93976 1.20604 0.98298 1.03085 0.94883 1.20875 0.93393 0.97067 0.99513 1.20062 1.01133 1.02612 0.90900 1.18281 0.91613 0.97318 0.92078 1.44124 1.17209 1.43331 1.08283 1.22339 0.80409 1.00885 1.03230 0.92624 0.95019 0.94712 0.94034 0.87195 0.92276 0.85589 0.85752 0.85478 0.85713 0.90246 0.90001 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.56 37.16 0.32 -2.80 16 2 C -0.14 -3.24 5.49 -26.74 -0.15 -3.39 16 3 C 0.22 5.65 2.25 -27.89 -0.06 5.59 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -13.92 8.90 -34.44 -0.31 -14.23 16 6 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -24.26 11.30 55.43 0.63 -23.64 16 9 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 O -0.35 -7.89 7.13 -40.95 -0.29 -8.18 16 14 C 0.51 10.90 6.37 34.15 0.22 11.12 16 15 O -0.48 -10.99 12.58 -19.34 -0.24 -11.24 16 16 C 0.06 1.18 6.81 -82.25 -0.56 0.62 16 17 C -0.05 -0.83 6.72 -39.03 -0.26 -1.09 16 18 Cl -0.02 -0.29 27.68 -51.86 -1.44 -1.72 16 19 C -0.11 -1.61 6.16 -106.91 -0.66 -2.27 16 20 C -0.06 -0.65 10.06 -39.53 -0.40 -1.05 16 21 C -0.15 -1.43 9.97 -39.97 -0.40 -1.83 16 22 C -0.09 -0.81 10.01 -39.53 -0.40 -1.21 16 23 C -0.13 -1.36 9.98 -39.42 -0.39 -1.75 16 24 C 0.12 1.63 6.81 -83.97 -0.57 1.06 16 25 N -0.45 -6.88 3.23 -117.68 -0.38 -7.26 16 26 C 0.07 0.92 10.49 59.85 0.63 1.55 16 27 H 0.05 1.26 7.79 -51.93 -0.40 0.86 16 28 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.78 8.12 -51.92 -0.42 0.36 16 39 H 0.11 1.68 6.08 -51.93 -0.32 1.36 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -29.40 340.58 -9.34 -38.74 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.64 Total: 0.90 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.08 Total: -8.07 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.25 Total: -30.90 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.54 Total: -19.42 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.44 Total: -1.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.40 -9.34 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.337 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds