Wall clock time and date at job start Sat Apr 11 2020 00:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 H 1.08999 * 109.46962 * 55.00180 * 3 2 1 5 5 C 1.50693 * 109.46776 * 174.99936 * 3 2 1 6 6 H 1.08007 * 120.00095 * 120.00202 * 5 3 2 7 7 C 1.37880 * 120.00167 * 299.99737 * 5 3 2 8 8 N 1.31512 * 119.99964 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00046 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46883 * 60.00013 * 9 7 5 11 11 H 1.48496 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46703 * 300.00036 * 9 7 5 13 13 O 1.45201 * 109.47043 * 294.99769 * 3 2 1 14 14 C 1.34845 * 116.99682 * 90.00240 * 13 3 2 15 15 O 1.21596 * 120.00127 * 359.97438 * 14 13 3 16 16 C 1.46741 * 119.99832 * 180.02562 * 14 13 3 17 17 C 1.36477 * 126.77517 * 270.02236 * 16 14 13 18 18 C 1.50698 * 125.11540 * 0.02562 * 17 16 14 19 19 N 1.35386 * 109.76047 * 179.97438 * 17 16 14 20 20 H 0.97005 * 124.77527 * 180.02562 * 19 17 16 21 21 C 1.38021 * 110.45248 * 0.02562 * 19 17 16 22 22 C 1.39118 * 133.16964 * 180.02562 * 21 19 17 23 23 C 1.37763 * 119.94486 * 179.97438 * 22 21 19 24 24 C 1.38845 * 120.62509 * 0.25590 * 23 22 21 25 25 Cl 1.73596 * 119.86615 * 179.72329 * 24 23 22 26 26 C 1.37874 * 120.26637 * 359.48242 * 24 23 22 27 27 C 1.39264 * 119.65661 * 0.51443 * 26 24 23 28 28 H 1.09000 * 109.47109 * 300.00127 * 1 2 3 29 29 H 1.08999 * 109.47193 * 60.00334 * 1 2 3 30 30 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47109 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.46989 * 120.00033 * 2 1 3 33 33 H 0.97001 * 119.99597 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47092 * 269.99363 * 18 17 16 35 35 H 1.08989 * 109.47753 * 29.99754 * 18 17 16 36 36 H 1.08999 * 109.46914 * 150.00258 * 18 17 16 37 37 H 1.07995 * 120.02885 * 359.94746 * 22 21 19 38 38 H 1.08002 * 119.68369 * 179.97438 * 23 22 21 39 39 H 1.07993 * 120.16847 * 180.27009 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8811 1.3819 10 1 6.4994 2.2814 1.3821 11 1 6.3977 0.2166 2.6504 12 1 6.5974 0.1471 0.2349 13 8 1.6559 2.0916 -1.2407 14 6 0.4673 2.7283 -1.2560 15 8 -0.2291 2.7399 -0.2593 16 6 0.0137 3.4062 -2.4759 17 6 0.2504 4.7040 -2.8256 18 6 1.0366 5.6934 -2.0046 19 7 -0.3265 4.9683 -4.0215 20 1 -0.2932 5.8254 -4.4745 21 6 -0.9688 3.8466 -4.5056 22 6 -1.6967 3.5919 -5.6634 23 6 -2.2318 2.3407 -5.8780 24 6 -2.0569 1.3271 -4.9454 25 17 -2.7458 -0.2402 -5.2325 26 6 -1.3340 1.5590 -3.7944 27 6 -0.7881 2.8196 -3.5658 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0618 2.9495 34 1 0.3640 6.2186 -1.3265 35 1 1.7950 5.1650 -1.4271 36 1 1.5193 6.4124 -2.6665 37 1 -1.8426 4.3745 -6.3932 38 1 -2.7965 2.1477 -6.7782 39 1 -1.1952 0.7683 -3.0721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:45 Heat of formation + Delta-G solvation = -49.401599 kcal Electronic energy + Delta-G solvation = -24628.048753 eV Core-core repulsion = 20947.573743 eV Total energy + Delta-G solvation = -3680.475010 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60549 -39.20635 -37.65623 -36.07728 -35.61143 -33.44435 -32.36286 -31.31924 -31.18422 -29.48564 -27.44889 -26.97152 -23.90277 -22.77200 -22.43227 -21.58313 -20.10863 -19.01698 -18.00916 -16.91978 -16.56053 -16.52529 -15.67112 -15.22439 -15.04108 -14.87223 -14.48116 -14.35705 -13.89587 -13.36615 -13.00083 -12.88521 -12.80943 -12.69373 -12.53488 -12.13309 -11.92474 -11.46788 -11.40904 -11.26922 -11.15161 -10.92293 -10.88182 -10.82745 -10.62176 -10.28466 -9.90250 -9.73224 -9.62477 -9.32229 -8.77176 -8.42694 -8.27419 -7.80967 -6.15957 -4.23059 0.85074 1.25619 2.13597 2.29270 2.76441 2.93247 3.27089 3.31082 3.33440 3.58137 3.89477 4.36197 4.41920 4.56276 4.85732 5.04351 5.15337 5.17321 5.23538 5.28736 5.42597 5.51857 5.79309 5.88526 5.90267 6.05144 6.17463 6.29131 6.32965 6.41098 6.45865 6.54718 6.81049 6.92641 7.01682 7.21766 7.25330 7.29313 7.64112 7.77235 7.97098 8.19085 8.67640 8.93081 9.42027 10.90675 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.003906 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.780253 B = 7165.917207 C = 8353.566813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.347 6.347 14 C 0.531 3.469 15 O -0.506 6.506 16 C -0.187 4.187 17 C 0.138 3.862 18 C -0.104 4.104 19 N -0.578 5.578 20 H 0.419 0.581 21 C 0.096 3.904 22 C -0.112 4.112 23 C -0.095 4.095 24 C -0.054 4.054 25 Cl -0.073 7.073 26 C -0.057 4.057 27 C -0.058 4.058 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.267 0.733 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 8.514 -15.249 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.263 6.263 14 C 0.373 3.627 15 O -0.395 6.395 16 C -0.195 4.195 17 C 0.027 3.973 18 C -0.161 4.161 19 N -0.181 5.181 20 H 0.257 0.743 21 C -0.010 4.010 22 C -0.133 4.133 23 C -0.114 4.114 24 C -0.082 4.082 25 Cl -0.044 7.044 26 C -0.076 4.076 27 C -0.062 4.062 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.666 8.355 -14.794 19.548 hybrid contribution 0.804 0.101 -0.024 0.810 sum -8.863 8.456 -14.818 19.225 Atomic orbital electron populations 1.21875 0.98377 0.99066 1.00746 1.22021 0.92637 0.99360 1.03375 1.20697 0.94974 0.88870 0.78707 0.93489 1.20999 0.89664 1.39080 1.06169 0.91414 1.24869 0.99101 0.94774 0.95083 1.69882 1.35416 1.37724 1.09481 0.86366 0.84041 0.78442 0.77472 1.20028 1.21047 1.19956 1.86675 1.33630 1.62104 1.43879 1.19862 0.80712 0.76161 0.85931 1.90825 1.55509 1.58243 1.34967 1.19068 1.09618 0.93576 0.97240 1.20277 0.96013 0.94689 0.86349 1.20669 0.99588 0.97012 0.98816 1.41334 1.46652 1.12088 1.17996 0.74289 1.18146 0.99650 0.86915 0.96324 1.19878 1.00441 0.97419 0.95535 1.20604 1.00712 0.91161 0.98954 1.20480 1.02879 0.87549 0.97268 1.98358 1.83593 1.26419 1.96057 1.20407 0.95190 0.95932 0.96049 1.18526 1.00806 0.93112 0.93795 0.92781 0.95010 0.94727 0.93940 0.87320 0.92350 0.89501 0.88510 0.90476 0.85105 0.84562 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.56 37.16 0.32 -2.91 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 5.87 2.25 -27.89 -0.06 5.80 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.50 8.90 -34.44 -0.31 -14.81 16 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.93 11.29 55.43 0.63 -24.30 16 9 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.35 -8.45 9.82 -40.89 -0.40 -8.85 16 14 C 0.53 11.62 5.75 34.17 0.20 11.81 16 15 O -0.51 -12.15 14.30 -19.34 -0.28 -12.43 16 16 C -0.19 -3.32 6.15 -103.34 -0.64 -3.96 16 17 C 0.14 1.88 7.12 -81.66 -0.58 1.30 16 18 C -0.10 -1.14 10.20 36.00 0.37 -0.77 16 19 N -0.58 -6.12 5.98 -6.77 -0.04 -6.16 16 20 H 0.42 2.67 8.96 -40.82 -0.37 2.31 16 21 C 0.10 1.20 7.26 -83.95 -0.61 0.59 16 22 C -0.11 -1.12 10.07 -39.43 -0.40 -1.51 16 23 C -0.09 -1.00 9.79 -39.53 -0.39 -1.39 16 24 C -0.05 -0.71 6.32 -39.49 -0.25 -0.96 16 25 Cl -0.07 -0.89 28.95 -51.86 -1.50 -2.40 16 26 C -0.06 -0.88 9.86 -39.33 -0.39 -1.27 16 27 C -0.06 -0.93 6.36 -104.95 -0.67 -1.59 16 28 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 29 H 0.03 0.69 5.87 -51.93 -0.30 0.39 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.29 7.85 -51.94 -0.41 0.88 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 2.24 7.87 -52.49 -0.41 1.83 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -31.93 346.82 -9.69 -41.62 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.66 Total: 3.01 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.64 Total: -11.58 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.59 Total: -30.46 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.68 Total: -21.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.93 -9.69 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.785 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds