Wall clock time and date at job start Sat Apr 11 2020 00:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 H 1.08999 * 109.46962 * 55.00180 * 3 2 1 5 5 C 1.50693 * 109.46776 * 174.99936 * 3 2 1 6 6 H 1.08007 * 120.00095 * 120.00202 * 5 3 2 7 7 C 1.37880 * 120.00167 * 299.99737 * 5 3 2 8 8 N 1.31512 * 119.99964 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00046 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46883 * 60.00013 * 9 7 5 11 11 H 1.48496 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46703 * 300.00036 * 9 7 5 13 13 O 1.45201 * 109.47043 * 294.99769 * 3 2 1 14 14 C 1.34845 * 116.99682 * 90.00240 * 13 3 2 15 15 O 1.21596 * 120.00127 * 359.97438 * 14 13 3 16 16 C 1.46741 * 119.99832 * 180.02562 * 14 13 3 17 17 C 1.36477 * 126.77517 * 270.02236 * 16 14 13 18 18 C 1.50698 * 125.11540 * 0.02562 * 17 16 14 19 19 N 1.35386 * 109.76047 * 179.97438 * 17 16 14 20 20 H 0.97005 * 124.77527 * 180.02562 * 19 17 16 21 21 C 1.38021 * 110.45248 * 0.02562 * 19 17 16 22 22 C 1.39118 * 133.16964 * 180.02562 * 21 19 17 23 23 C 1.37763 * 119.94486 * 179.97438 * 22 21 19 24 24 C 1.38845 * 120.62509 * 0.25590 * 23 22 21 25 25 Cl 1.73596 * 119.86615 * 179.72329 * 24 23 22 26 26 C 1.37874 * 120.26637 * 359.48242 * 24 23 22 27 27 C 1.39264 * 119.65661 * 0.51443 * 26 24 23 28 28 H 1.09000 * 109.47109 * 300.00127 * 1 2 3 29 29 H 1.08999 * 109.47193 * 60.00334 * 1 2 3 30 30 H 1.09001 * 109.47353 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47109 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.46989 * 120.00033 * 2 1 3 33 33 H 0.97001 * 119.99597 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47092 * 269.99363 * 18 17 16 35 35 H 1.08989 * 109.47753 * 29.99754 * 18 17 16 36 36 H 1.08999 * 109.46914 * 150.00258 * 18 17 16 37 37 H 1.07995 * 120.02885 * 359.94746 * 22 21 19 38 38 H 1.08002 * 119.68369 * 179.97438 * 23 22 21 39 39 H 1.07993 * 120.16847 * 180.27009 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8811 1.3819 10 1 6.4994 2.2814 1.3821 11 1 6.3977 0.2166 2.6504 12 1 6.5974 0.1471 0.2349 13 8 1.6559 2.0916 -1.2407 14 6 0.4673 2.7283 -1.2560 15 8 -0.2291 2.7399 -0.2593 16 6 0.0137 3.4062 -2.4759 17 6 0.2504 4.7040 -2.8256 18 6 1.0366 5.6934 -2.0046 19 7 -0.3265 4.9683 -4.0215 20 1 -0.2932 5.8254 -4.4745 21 6 -0.9688 3.8466 -4.5056 22 6 -1.6967 3.5919 -5.6634 23 6 -2.2318 2.3407 -5.8780 24 6 -2.0569 1.3271 -4.9454 25 17 -2.7458 -0.2402 -5.2325 26 6 -1.3340 1.5590 -3.7944 27 6 -0.7881 2.8196 -3.5658 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0618 2.9495 34 1 0.3640 6.2186 -1.3265 35 1 1.7950 5.1650 -1.4271 36 1 1.5193 6.4124 -2.6665 37 1 -1.8426 4.3745 -6.3932 38 1 -2.7965 2.1477 -6.7782 39 1 -1.1952 0.7683 -3.0721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:45 Heat of formation + Delta-G solvation = -67.106169 kcal Electronic energy + Delta-G solvation = -24628.816481 eV Core-core repulsion = 20947.573743 eV Total energy + Delta-G solvation = -3681.242738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66375 -40.99761 -38.64557 -37.53598 -37.03789 -35.47604 -33.57898 -33.21695 -32.15247 -30.54964 -29.35329 -28.13561 -25.64749 -24.47132 -23.46589 -22.62714 -21.96807 -20.64997 -19.13278 -18.62727 -18.26707 -17.90555 -17.02228 -16.74156 -16.54261 -16.17567 -15.98576 -15.44464 -14.97170 -14.81456 -14.74015 -14.29599 -14.15150 -13.68243 -13.54769 -13.45953 -13.39580 -13.31836 -13.14772 -12.93827 -12.79300 -12.57151 -12.48298 -12.14895 -11.88589 -11.82104 -11.74413 -11.51109 -11.39021 -10.87461 -10.82061 -10.52616 -9.25279 -8.88458 -8.26048 -6.43487 -0.15818 0.28282 1.12776 1.14992 1.23723 1.42256 1.46060 1.54256 1.80635 2.23456 2.48614 2.63392 3.03096 3.42239 3.63671 3.91984 4.03228 4.16529 4.23898 4.28367 4.33241 4.37105 4.40598 4.57614 4.59165 4.60831 4.80413 4.87023 4.98619 5.04913 5.10479 5.18921 5.23660 5.29331 5.36859 5.42511 5.51635 5.64607 5.82175 5.94557 6.10969 6.48371 6.60441 6.99275 7.28038 8.80629 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.003906 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.780253 B = 7165.917207 C = 8353.566813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.359 6.359 14 C 0.537 3.463 15 O -0.539 6.539 16 C -0.254 4.254 17 C 0.167 3.833 18 C -0.105 4.105 19 N -0.550 5.550 20 H 0.445 0.555 21 C 0.094 3.906 22 C -0.086 4.086 23 C -0.093 4.093 24 C -0.051 4.051 25 Cl -0.071 7.071 26 C -0.096 4.096 27 C -0.085 4.085 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.271 0.729 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 10.582 -18.349 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.027 0.973 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.191 1.191 13 O -0.275 6.275 14 C 0.381 3.619 15 O -0.430 6.430 16 C -0.263 4.263 17 C 0.053 3.947 18 C -0.162 4.162 19 N -0.155 5.155 20 H 0.288 0.712 21 C -0.012 4.012 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.078 4.078 25 Cl -0.042 7.042 26 C -0.115 4.115 27 C -0.089 4.089 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.199 0.801 38 H 0.189 0.811 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.722 10.453 -17.942 22.928 hybrid contribution 0.721 -0.500 0.878 1.241 sum -9.002 9.952 -17.065 21.709 Atomic orbital electron populations 1.21717 0.96559 1.00525 0.99870 1.21875 0.94214 0.98392 1.02252 1.20404 0.94726 0.89162 0.78574 0.97335 1.21268 0.90269 1.40275 1.06946 0.91676 1.25797 1.04253 0.93741 0.94247 1.70008 1.37549 1.37751 1.09855 0.85269 0.77603 0.78927 0.77831 1.19048 1.20145 1.19120 1.86668 1.35521 1.62756 1.42555 1.20570 0.79180 0.75014 0.87124 1.90777 1.55938 1.59439 1.36852 1.18981 1.13952 0.95838 0.97482 1.20492 0.94099 0.93350 0.86784 1.20792 0.99063 0.96940 0.99398 1.41202 1.44916 1.12770 1.16596 0.71221 1.18364 1.00103 0.86291 0.96447 1.20417 0.97361 0.98150 0.94696 1.21050 1.00447 0.90520 0.99236 1.20679 1.01915 0.88344 0.96889 1.98356 1.83385 1.26590 1.95907 1.20301 0.98214 0.95730 0.97281 1.18693 1.01420 0.94418 0.94384 0.94368 0.95135 0.91948 0.93970 0.89191 0.91983 0.88055 0.91549 0.86040 0.80106 0.81085 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.56 71.98 0.62 -5.57 16 2 C -0.13 -6.92 5.49 30.59 0.17 -6.75 16 3 C 0.22 12.80 2.25 29.85 0.07 12.86 16 4 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 5 C -0.55 -31.97 8.90 25.60 0.23 -31.74 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.68 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -53.04 11.29 21.45 0.24 -52.79 16 9 Si 0.98 43.21 29.54 68.60 2.03 45.24 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 O -0.36 -18.76 9.82 -57.58 -0.57 -19.33 16 14 C 0.54 25.22 5.75 70.04 0.40 25.63 16 15 O -0.54 -28.02 14.30 19.52 0.28 -27.74 16 16 C -0.25 -9.39 6.15 -19.03 -0.12 -9.51 16 17 C 0.17 4.38 7.12 41.60 0.30 4.68 16 18 C -0.10 -2.16 10.20 71.24 0.73 -1.44 16 19 N -0.55 -9.84 5.98 -175.34 -1.05 -10.89 16 20 H 0.44 3.42 8.96 -92.70 -0.83 2.59 16 21 C 0.09 2.11 7.26 38.90 0.28 2.39 16 22 C -0.09 -1.31 10.07 22.37 0.23 -1.09 16 23 C -0.09 -1.63 9.79 22.30 0.22 -1.41 16 24 C -0.05 -1.28 6.32 22.33 0.14 -1.14 16 25 Cl -0.07 -1.71 28.95 -2.72 -0.08 -1.78 16 26 C -0.10 -3.11 9.86 22.43 0.22 -2.89 16 27 C -0.08 -2.76 6.36 -20.08 -0.13 -2.89 16 28 H 0.04 1.90 7.79 -2.39 -0.02 1.89 16 29 H 0.03 1.43 5.87 -2.39 -0.01 1.42 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 5.15 5.95 -2.38 -0.01 5.14 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.82 7.85 -2.39 -0.02 1.80 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.11 3.92 7.87 -2.91 -0.02 3.89 16 Total: -1.00 -76.12 346.82 4.92 -71.20 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.27 Total: 13.42 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.80 Total: -17.32 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.81 Total: -63.68 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.29 Total: -47.07 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.78 kcal Total: -76.12 4.92 -71.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.098 kcal (2) G-P(sol) polarization free energy of solvation -76.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds