Wall clock time and date at job start Sat Apr 11 2020 00:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.08991 * 109.47144 * 55.00606 * 3 2 1 5 5 C 1.50709 * 109.46732 * 175.00076 * 3 2 1 6 6 H 1.07997 * 119.99585 * 120.00368 * 5 3 2 7 7 C 1.37877 * 119.99935 * 300.00226 * 5 3 2 8 8 N 1.31509 * 119.99689 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00071 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.46985 * 90.00029 * 9 7 5 11 11 H 1.48505 * 109.46939 * 210.00111 * 9 7 5 12 12 H 1.48494 * 109.47036 * 330.00068 * 9 7 5 13 13 O 1.45204 * 109.47297 * 294.99940 * 3 2 1 14 14 C 1.34800 * 116.99588 * 90.00207 * 13 3 2 15 15 O 1.21561 * 120.00354 * 0.02562 * 14 13 3 16 16 C 1.47108 * 119.99944 * 179.97438 * 14 13 3 17 17 C 1.35147 * 122.49684 * 180.02562 * 16 14 13 18 18 S 1.70978 * 109.19377 * 179.74933 * 17 16 14 19 19 C 1.75964 * 90.67662 * 0.34249 * 18 17 16 20 20 C 1.47931 * 125.27452 * 179.91592 * 19 18 17 21 21 C 1.41041 * 126.26470 * 179.67259 * 20 19 18 22 22 N 1.30608 * 108.06634 * 180.02562 * 21 20 19 23 23 N 1.39995 * 108.59184 * 359.97438 * 22 21 20 24 24 C 1.46507 * 125.85951 * 179.73690 * 23 22 21 25 25 C 1.34703 * 108.28497 * 0.02562 * 23 22 21 26 26 N 1.29814 * 109.45139 * 359.65152 * 19 18 17 27 27 H 1.09005 * 109.46799 * 299.99935 * 1 2 3 28 28 H 1.08997 * 109.47179 * 59.99842 * 1 2 3 29 29 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46799 * 240.00065 * 2 1 3 31 31 H 1.08997 * 109.46932 * 120.00650 * 2 1 3 32 32 H 0.97003 * 120.00195 * 179.97438 * 8 7 5 33 33 H 1.07997 * 125.40205 * 0.02562 * 17 16 14 34 34 H 1.08009 * 125.96625 * 0.06329 * 21 20 19 35 35 H 1.09004 * 109.46792 * 90.02020 * 24 23 22 36 36 H 1.08999 * 109.47121 * 210.02717 * 24 23 22 37 37 H 1.08998 * 109.47112 * 330.02808 * 24 23 22 38 38 H 1.07997 * 126.20502 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8793 1.3357 9 14 3.0964 0.1086 2.5700 10 1 2.8756 -1.3274 2.2631 11 1 3.7937 0.2345 3.8751 12 1 1.7878 0.8071 2.6386 13 8 1.6559 2.0917 -1.2407 14 6 0.4677 2.7282 -1.2560 15 8 -0.2281 2.7406 -0.2592 16 6 0.0135 3.4088 -2.4785 17 6 -1.1674 4.0621 -2.5497 18 16 -1.3478 4.7283 -4.1140 19 6 0.2086 4.0655 -4.5984 20 6 0.8234 4.2183 -5.9352 21 6 2.0708 3.7022 -6.3437 22 7 2.2636 4.0467 -7.5887 23 7 1.1588 4.7889 -8.0227 24 6 0.9840 5.3672 -9.3574 25 6 0.2867 4.8855 -7.0006 26 7 0.7363 3.4266 -3.5992 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.8771 0.4815 2.1126 33 1 -1.8816 4.1531 -1.7447 34 1 2.7480 3.1226 -5.7337 35 1 0.4831 4.6459 -10.0031 36 1 0.3798 6.2715 -9.2852 37 1 1.9593 5.6144 -9.7768 38 1 -0.6640 5.3974 -7.0194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:47 Heat of formation + Delta-G solvation = 19.860532 kcal Electronic energy + Delta-G solvation = -23823.048500 eV Core-core repulsion = 20179.913378 eV Total energy + Delta-G solvation = -3643.135121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.28489 -41.72621 -40.12988 -37.76615 -35.52734 -34.49295 -33.93932 -32.73079 -30.65049 -29.87356 -27.93218 -27.01845 -24.91741 -24.24562 -22.56851 -22.23673 -21.48090 -20.55087 -19.75577 -18.93044 -18.34445 -17.80329 -17.37735 -17.30829 -16.62207 -16.48449 -15.80120 -15.55641 -15.23205 -15.14232 -14.79866 -14.67113 -14.12885 -13.96196 -13.86751 -13.61023 -13.52199 -13.31539 -13.20398 -13.18556 -13.00137 -12.57982 -12.05047 -11.90908 -11.79117 -11.54424 -11.38762 -11.16805 -11.16657 -10.79569 -10.75494 -10.55075 -10.32477 -9.06687 -8.45342 -6.54552 -0.72468 0.13714 0.38738 0.43486 0.92706 1.22545 1.29763 1.40579 1.54572 1.72028 1.95720 2.19174 2.26777 2.85861 2.87164 3.57159 3.84223 3.89329 4.00386 4.07376 4.15201 4.21858 4.23538 4.29105 4.48244 4.51200 4.55380 4.68569 4.78762 4.85910 4.90597 4.93817 5.01126 5.28391 5.31670 5.39416 5.57333 5.94097 6.08617 6.42342 6.49281 6.56189 6.87893 7.09897 8.71130 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.003237 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.240933 B = 8647.437129 C = 9755.915175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.199 3.801 4 H 0.034 0.966 5 C -0.542 4.542 6 H 0.040 0.960 7 C 0.030 3.970 8 N -0.931 5.931 9 Si 0.941 3.059 10 H -0.249 1.249 11 H -0.281 1.281 12 H -0.252 1.252 13 O -0.338 6.338 14 C 0.526 3.474 15 O -0.525 6.525 16 C 0.006 3.994 17 C -0.218 4.218 18 S 0.284 5.716 19 C 0.130 3.870 20 C -0.210 4.210 21 C 0.082 3.918 22 N -0.324 5.324 23 N -0.362 5.362 24 C 0.087 3.913 25 C 0.118 3.882 26 N -0.470 5.470 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.276 0.724 33 H 0.208 0.792 34 H 0.178 0.822 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.058 11.183 -21.014 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.145 3.855 4 H 0.052 0.948 5 C -0.579 4.579 6 H 0.058 0.942 7 C -0.170 4.170 8 N -0.569 5.569 9 Si 0.765 3.235 10 H -0.174 1.174 11 H -0.207 1.207 12 H -0.176 1.176 13 O -0.253 6.253 14 C 0.370 3.630 15 O -0.416 6.416 16 C -0.127 4.127 17 C -0.360 4.360 18 S 0.544 5.456 19 C -0.148 4.148 20 C -0.226 4.226 21 C -0.107 4.107 22 N -0.145 5.145 23 N -0.141 5.141 24 C -0.052 4.052 25 C -0.036 4.036 26 N -0.185 5.185 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.225 0.775 34 H 0.195 0.805 35 H 0.113 0.887 36 H 0.147 0.853 37 H 0.110 0.890 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -19.552 11.459 -22.296 31.791 hybrid contribution 0.469 -1.050 2.625 2.866 sum -19.083 10.409 -19.670 29.316 Atomic orbital electron populations 1.21806 0.94320 1.02175 1.01385 1.22264 0.96715 0.97235 1.02090 1.20756 0.94078 0.89963 0.80720 0.94793 1.20956 0.89691 1.40054 1.07221 0.94210 1.25613 0.96216 0.95464 0.99712 1.69970 1.10474 1.45448 1.31026 0.85961 0.79361 0.80320 0.77832 1.17379 1.20743 1.17593 1.86692 1.35102 1.62487 1.41015 1.20502 0.79786 0.75790 0.86959 1.90772 1.55918 1.59939 1.34988 1.19116 0.94550 1.06791 0.92291 1.26787 1.00707 1.02173 1.06350 1.82905 1.16538 1.47071 0.99061 1.25248 0.95942 0.98400 0.95194 1.17884 0.98808 1.14427 0.91514 1.24082 0.96331 0.98056 0.92220 1.77329 1.08912 1.14971 1.13298 1.48872 1.13030 1.39612 1.12574 1.22436 1.05390 1.00288 0.77068 1.23080 0.97222 0.97542 0.85755 1.67256 1.32767 1.19450 0.99068 0.92849 0.93982 0.90422 0.91321 0.91845 0.91473 0.77517 0.80501 0.88669 0.85347 0.89014 0.75199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 8.56 71.98 0.62 -4.90 16 2 C -0.15 -6.85 5.14 30.60 0.16 -6.69 16 3 C 0.20 10.80 1.84 29.85 0.06 10.86 16 4 H 0.03 1.91 6.22 -2.39 -0.01 1.90 16 5 C -0.54 -33.96 9.48 25.60 0.24 -33.72 16 6 H 0.04 2.79 8.06 -2.91 -0.02 2.76 16 7 C 0.03 1.79 5.45 84.66 0.46 2.25 16 8 N -0.93 -59.32 13.96 21.45 0.30 -59.02 16 9 Si 0.94 45.66 24.41 68.60 1.67 47.34 16 10 H -0.25 -11.10 6.83 99.48 0.68 -10.42 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.25 -11.83 6.53 99.48 0.65 -11.18 16 13 O -0.34 -17.68 9.72 -57.12 -0.56 -18.24 16 14 C 0.53 23.56 6.38 70.15 0.45 24.01 16 15 O -0.52 -23.73 13.84 19.64 0.27 -23.46 16 16 C 0.01 0.21 6.66 40.53 0.27 0.48 16 17 C -0.22 -5.46 10.56 67.11 0.71 -4.75 16 18 S 0.28 4.50 22.95 -56.49 -1.30 3.20 16 19 C 0.13 3.32 7.45 87.56 0.65 3.97 16 20 C -0.21 -4.67 6.09 -20.39 -0.12 -4.80 16 21 C 0.08 2.20 11.97 85.56 1.02 3.23 16 22 N -0.32 -7.89 12.53 -56.35 -0.71 -8.59 16 23 N -0.36 -5.30 4.00 -368.59 -1.47 -6.78 16 24 C 0.09 0.34 11.46 127.77 1.46 1.80 16 25 C 0.12 1.48 11.24 83.89 0.94 2.43 16 26 N -0.47 -16.81 10.56 -179.28 -1.89 -18.70 16 27 H 0.05 2.13 7.79 -2.38 -0.02 2.11 16 28 H 0.04 1.67 6.06 -2.39 -0.01 1.65 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 31 H 0.06 2.97 3.21 -2.39 -0.01 2.96 16 32 H 0.28 16.13 8.31 -92.71 -0.77 15.35 16 33 H 0.21 4.37 7.99 -2.91 -0.02 4.35 16 34 H 0.18 5.25 8.06 -2.91 -0.02 5.22 16 35 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -86.00 339.19 4.26 -81.74 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.02 Total: 8.35 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.92 Total: -5.84 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -3.77 Total: -93.09 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.28 Total: -41.70 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.67 Total: 47.34 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.30 Total: 3.20 kcal Total: -86.00 4.26 -81.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.603 kcal (2) G-P(sol) polarization free energy of solvation -86.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds