Wall clock time and date at job start Sat Apr 11 2020 00:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48501 * 109.47236 * 270.00344 * 3 2 1 5 5 H 1.48507 * 109.47230 * 30.00018 * 3 2 1 6 6 H 1.48500 * 109.47236 * 150.00127 * 3 2 1 7 7 C 1.37880 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99682 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99557 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46636 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99875 * 179.97438 * 10 9 7 12 12 O 1.21583 * 119.99958 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.46890 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47059 * 180.02562 * 15 14 13 17 17 C 1.34232 * 126.49839 * 265.00326 * 16 15 14 18 18 N 1.36861 * 109.92646 * 179.97438 * 17 16 15 19 19 H 0.97000 * 125.06453 * 180.02562 * 18 17 16 20 20 C 1.37691 * 109.86995 * 0.02562 * 18 17 16 21 21 C 1.39125 * 133.48586 * 179.71365 * 20 18 17 22 22 C 1.37858 * 119.76612 * 179.85335 * 21 20 18 23 23 Cl 1.73597 * 119.67978 * 180.21829 * 22 21 20 24 24 C 1.38935 * 120.63251 * 0.43948 * 22 21 20 25 25 C 1.36609 * 120.52118 * 359.79970 * 24 22 21 26 26 C 1.39632 * 119.78373 * 359.97438 * 25 24 22 27 27 H 0.96998 * 120.00291 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47248 * 59.99974 * 9 7 2 29 29 H 1.08999 * 109.46835 * 299.99484 * 9 7 2 30 30 H 0.97001 * 120.00225 * 359.97438 * 10 9 7 31 31 H 0.97001 * 120.00304 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.46852 * 59.99201 * 14 13 11 33 33 H 1.08998 * 109.46584 * 299.99643 * 14 13 11 34 34 H 1.08999 * 109.47761 * 60.00081 * 15 14 13 35 35 H 1.08998 * 109.47480 * 299.99418 * 15 14 13 36 36 H 1.08001 * 125.03554 * 359.97389 * 17 16 15 37 37 H 1.08001 * 120.11172 * 0.28847 * 21 20 18 38 38 H 1.07998 * 119.73347 * 179.77704 * 24 22 21 39 39 H 1.07998 * 120.10962 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5587 -5.1055 0.0020 13 7 2.6299 -5.9077 0.0016 14 6 2.1417 -7.2889 0.0016 15 6 3.3317 -8.2504 0.0016 16 6 2.8295 -9.6713 0.0009 17 6 2.6517 -10.4558 1.0756 18 7 2.1821 -11.6809 0.6862 19 1 1.9775 -12.4155 1.2857 20 6 2.0434 -11.7153 -0.6833 21 6 1.6201 -12.6925 -1.5785 22 6 1.5882 -12.4161 -2.9287 23 17 1.0542 -13.6353 -4.0432 24 6 1.9835 -11.1728 -3.4064 25 6 2.4070 -10.2012 -2.5446 26 6 2.4428 -10.4584 -1.1726 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5566 0.8903 30 1 3.1569 -3.4353 0.0002 31 1 3.5836 -5.7304 0.0012 32 1 1.5364 -7.4603 -0.8886 33 1 1.5358 -7.4600 0.8914 34 1 3.9373 -8.0792 0.8915 35 1 3.9372 -8.0792 -0.8884 36 1 2.8500 -10.1635 2.0962 37 1 1.3110 -13.6619 -1.2162 38 1 1.9561 -10.9732 -4.4674 39 1 2.7133 -9.2372 -2.9232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:51 Heat of formation + Delta-G solvation = 7.655661 kcal Electronic energy + Delta-G solvation = -22699.220840 eV Core-core repulsion = 19053.512769 eV Total energy + Delta-G solvation = -3645.708071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65389 -39.10713 -37.79225 -36.26791 -35.47566 -34.01346 -32.90388 -32.17704 -30.56902 -29.57936 -28.12677 -26.73330 -23.50657 -23.31099 -22.18862 -22.10446 -20.28250 -19.60610 -18.36857 -17.77654 -16.87841 -16.18462 -16.07586 -15.65563 -15.25056 -14.90913 -14.76390 -14.56915 -14.23789 -13.87389 -13.66141 -13.31804 -13.20783 -13.10649 -12.67171 -12.27892 -12.00304 -11.89301 -11.83293 -11.60070 -11.28392 -11.19754 -11.03766 -10.92675 -10.83911 -10.27086 -9.85666 -9.35499 -9.33046 -8.72578 -8.61920 -8.53670 -7.98642 -7.69941 -6.12078 -4.18475 0.65723 1.17683 1.78662 2.27440 2.81036 3.26871 3.32123 3.34676 3.42359 3.54092 4.03163 4.34867 4.36218 4.42374 4.69976 4.80753 4.88502 5.05986 5.11625 5.17515 5.23837 5.25672 5.32013 5.40546 5.56908 5.63859 5.90399 6.05489 6.10450 6.16172 6.26485 6.41626 6.70686 6.94514 7.12967 7.18309 7.56956 7.60388 7.61996 7.96033 8.09304 8.80965 9.00764 9.38952 9.53392 10.98174 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.001912 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.713076 B =14638.031709 C =15284.189774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.759 5.759 14 C 0.147 3.853 15 C -0.055 4.055 16 C -0.160 4.160 17 C 0.062 3.938 18 N -0.592 5.592 19 H 0.418 0.582 20 C 0.104 3.896 21 C -0.122 4.122 22 C -0.013 4.013 23 Cl -0.072 7.072 24 C -0.139 4.139 25 C -0.052 4.052 26 C -0.096 4.096 27 H 0.265 0.735 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.391 0.609 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.175 0.825 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.046 -28.199 -1.251 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.417 5.417 14 C 0.022 3.978 15 C -0.094 4.094 16 C -0.167 4.167 17 C -0.064 4.064 18 N -0.195 5.195 19 H 0.255 0.745 20 C -0.003 4.003 21 C -0.144 4.144 22 C -0.041 4.041 23 Cl -0.044 7.044 24 C -0.159 4.159 25 C -0.070 4.070 26 C -0.101 4.101 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.218 0.782 31 H 0.223 0.777 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.192 0.808 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.653 -28.423 -1.232 29.461 hybrid contribution 1.066 0.544 0.235 1.220 sum 8.719 -27.879 -0.997 29.228 Atomic orbital electron populations 1.69980 1.06080 1.27219 1.49013 1.24955 0.94918 0.99400 0.94841 0.86413 0.79576 0.82696 0.78172 1.20499 1.21053 1.19804 1.21237 0.93261 0.90470 1.52987 0.91950 1.18965 0.87809 0.81101 0.97572 1.45713 1.10717 1.04472 1.77395 1.16158 0.85225 0.81062 0.78400 1.90873 1.14323 1.84266 1.58589 1.45172 1.08744 1.05263 1.82525 1.21025 0.95394 0.79124 1.02254 1.20100 0.97217 0.88823 1.03223 1.20033 1.09731 0.96135 0.90813 1.21729 1.00850 0.84392 0.99447 1.41702 1.58267 1.14323 1.05164 0.74525 1.17934 1.02867 0.95823 0.83711 1.19716 1.05469 0.98831 0.90358 1.20395 1.03031 0.90947 0.89712 1.98367 1.88838 1.55044 1.62111 1.20521 1.02950 0.91743 1.00663 1.20277 0.97043 0.98990 0.90734 1.19161 1.04096 0.93342 0.93485 0.92493 0.95791 0.95789 0.78211 0.77654 0.91993 0.92105 0.90449 0.90442 0.80825 0.85274 0.84863 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 10 N -0.73 -15.80 5.55 -66.41 -0.37 -16.17 16 11 C 0.69 14.49 8.57 -86.92 -0.74 13.74 16 12 O -0.60 -15.45 16.34 5.29 0.09 -15.36 16 13 N -0.76 -11.14 5.56 -65.23 -0.36 -11.50 16 14 C 0.15 1.89 5.66 -4.04 -0.02 1.87 16 15 C -0.06 -0.48 5.86 -27.89 -0.16 -0.65 16 16 C -0.16 -1.47 5.57 -102.71 -0.57 -2.04 16 17 C 0.06 0.45 11.73 -16.72 -0.20 0.25 16 18 N -0.59 -4.07 6.07 -10.64 -0.06 -4.14 16 19 H 0.42 1.58 8.96 -40.82 -0.37 1.22 16 20 C 0.10 0.97 7.28 -83.99 -0.61 0.36 16 21 C -0.12 -1.07 9.84 -39.39 -0.39 -1.46 16 22 C -0.01 -0.12 6.31 -39.46 -0.25 -0.37 16 23 Cl -0.07 -0.63 28.93 -51.86 -1.50 -2.13 16 24 C -0.14 -1.30 9.75 -39.91 -0.39 -1.69 16 25 C -0.05 -0.51 10.05 -39.65 -0.40 -0.91 16 26 C -0.10 -0.99 6.35 -105.13 -0.67 -1.65 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 7.05 8.34 -40.82 -0.34 6.71 16 31 H 0.39 4.38 8.49 -40.82 -0.35 4.04 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -35.36 356.51 -10.78 -46.15 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.81 Total: 6.31 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -4.85 Total: 1.16 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.06 Total: -57.43 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.36 -10.78 -46.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.802 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds