Wall clock time and date at job start Sat Apr 11 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00031 * 2 1 4 4 N 1.46501 * 109.47369 * 125.00053 * 3 2 1 5 5 C 1.46501 * 119.99686 * 270.00042 * 4 3 2 6 6 C 1.50699 * 109.46956 * 269.99515 * 5 4 3 7 7 H 1.07992 * 120.00273 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99787 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00172 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46864 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47242 * 119.99867 * 10 8 6 13 13 H 1.48500 * 109.47322 * 240.00071 * 10 8 6 14 14 C 1.34780 * 120.00052 * 89.99591 * 4 3 2 15 15 S 1.71193 * 119.99840 * 180.02562 * 14 4 3 16 16 N 1.34771 * 120.00004 * 0.02562 * 14 4 3 17 17 C 1.39888 * 120.00436 * 185.52245 * 16 14 4 18 18 C 1.38891 * 120.06811 * 41.85008 * 17 16 14 19 19 C 1.38106 * 119.92478 * 180.02562 * 18 17 16 20 20 C 1.38279 * 120.07680 * 0.02562 * 19 18 17 21 21 N 1.48023 * 119.93111 * 179.97438 * 20 19 18 22 22 O 1.21804 * 119.99801 * 0.02562 * 21 20 19 23 23 O 1.21798 * 119.99930 * 179.72264 * 21 20 19 24 24 C 1.38285 * 120.14241 * 0.25728 * 20 19 18 25 25 C 1.38116 * 120.06811 * 359.48640 * 24 20 19 26 26 H 1.08003 * 120.00013 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99965 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99967 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47156 * 4.99670 * 3 2 1 30 30 H 1.09004 * 109.47092 * 244.99656 * 3 2 1 31 31 H 1.08998 * 109.47155 * 30.00290 * 5 4 3 32 32 H 1.09000 * 109.46650 * 149.99714 * 5 4 3 33 33 H 0.96993 * 120.00228 * 179.97438 * 9 8 6 34 34 H 0.97005 * 120.00367 * 5.52153 * 16 14 4 35 35 H 1.07997 * 120.03497 * 0.02562 * 18 17 16 36 36 H 1.08008 * 119.95896 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.96539 * 179.74968 * 24 20 19 38 38 H 1.08002 * 120.03541 * 180.26485 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3436 2.4803 7 1 3.3041 3.8369 1.6368 8 6 2.5194 4.0666 3.6085 9 7 1.9599 3.4658 4.6360 10 14 2.8725 5.8996 3.6771 11 1 3.4994 6.3310 2.4018 12 1 1.6020 6.6413 3.8793 13 1 3.7964 6.1839 4.8044 14 6 4.2498 0.8661 0.9824 15 16 5.3366 0.8969 2.3047 16 7 4.6500 0.3761 -0.2076 17 6 5.9127 -0.2126 -0.3327 18 6 6.3866 -1.0608 0.6599 19 6 7.6339 -1.6400 0.5336 20 6 8.4111 -1.3760 -0.5793 21 7 9.7478 -1.9982 -0.7111 22 8 10.1618 -2.7421 0.1600 23 8 10.4312 -1.7705 -1.6932 24 6 7.9447 -0.5275 -1.5666 25 6 6.6960 0.0508 -1.4489 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4888 1.6966 2.5459 32 1 3.0990 1.3603 3.2259 33 1 1.7316 3.9743 5.4298 34 1 4.0624 0.4316 -0.9775 35 1 5.7803 -1.2670 1.5295 36 1 8.0031 -2.2993 1.3053 37 1 8.5558 -0.3202 -2.4326 38 1 6.3305 0.7101 -2.2223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793247596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:53 Heat of formation + Delta-G solvation = 62.635846 kcal Electronic energy + Delta-G solvation = -23791.018412 eV Core-core repulsion = 20149.738168 eV Total energy + Delta-G solvation = -3641.280244 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.21457 -41.56729 -39.94629 -37.63754 -37.07003 -35.23349 -34.28584 -32.48919 -31.96020 -29.65963 -28.36859 -27.09129 -25.46047 -24.48046 -23.26561 -22.74394 -21.07801 -20.37280 -19.83063 -19.64873 -19.06969 -18.64888 -18.56813 -17.23007 -16.73975 -16.48680 -16.20604 -16.01403 -15.73906 -14.87829 -14.84481 -14.60882 -14.45335 -14.24689 -13.78850 -13.49236 -13.18909 -12.94387 -12.74379 -12.69528 -12.59350 -12.35999 -12.27949 -12.26364 -12.24752 -12.19350 -11.79432 -10.99331 -10.65014 -10.50151 -10.42821 -9.67984 -8.93129 -8.24474 -8.21472 -6.34264 -1.27870 0.02167 0.04201 0.41206 0.51091 0.79659 1.22605 1.36451 1.41361 1.48159 1.52567 2.23081 2.30562 2.40504 3.11218 3.41596 3.55184 3.71590 3.76246 3.84865 3.90232 4.11877 4.19036 4.38311 4.54594 4.69945 4.72717 4.77457 4.92072 4.94787 5.02074 5.17318 5.19558 5.40851 5.52348 5.58249 5.63965 5.67671 5.84079 5.96312 6.22645 6.54137 6.70630 7.33005 8.84655 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003444 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.856568 B = 8128.362238 C = 9199.646120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.196 4.196 3 C 0.110 3.890 4 N -0.519 5.519 5 C 0.255 3.745 6 C -0.527 4.527 7 H 0.053 0.947 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.958 3.042 11 H -0.268 1.268 12 H -0.271 1.271 13 H -0.289 1.289 14 C 0.572 3.428 15 S -0.716 6.716 16 N -0.626 5.626 17 C 0.197 3.803 18 C -0.085 4.085 19 C -0.051 4.051 20 C -0.064 4.064 21 N 0.035 4.965 22 O -0.201 6.201 23 O -0.163 6.163 24 C -0.036 4.036 25 C -0.114 4.114 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.428 0.572 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.181 0.819 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -8.343 -18.488 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.215 4.215 3 C -0.014 4.014 4 N -0.219 5.219 5 C 0.135 3.865 6 C -0.566 4.566 7 H 0.071 0.929 8 C -0.180 4.180 9 N -0.560 5.560 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.197 1.197 13 H -0.215 1.215 14 C 0.211 3.789 15 S -0.582 6.582 16 N -0.258 5.258 17 C 0.101 3.899 18 C -0.109 4.109 19 C -0.073 4.073 20 C -0.148 4.148 21 N 0.549 4.451 22 O -0.409 6.409 23 O -0.381 6.381 24 C -0.056 4.056 25 C -0.136 4.136 26 H 0.137 0.863 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.273 0.727 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.198 0.802 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.509 -7.901 -17.279 19.006 hybrid contribution -0.223 0.803 -0.007 0.834 sum -0.732 -7.098 -17.286 18.701 Atomic orbital electron populations 1.24173 0.95439 1.03475 0.95530 1.23100 0.96931 0.97194 1.04306 1.21343 0.93243 0.98465 0.88302 1.47819 1.07072 1.51894 1.15104 1.19455 0.94967 0.93739 0.78350 1.21350 1.40617 0.93141 1.01457 0.92886 1.25589 0.94745 1.02780 0.94917 1.70016 1.42609 1.37731 1.05660 0.85502 0.77946 0.80136 0.78004 1.19259 1.19660 1.21521 1.21717 0.87036 0.81083 0.89102 1.93550 1.48994 1.80208 1.35461 1.42128 1.16881 1.57445 1.09372 1.17943 0.84862 0.91145 0.95979 1.21350 0.96362 0.94146 0.99047 1.20804 0.92776 0.98088 0.95594 1.21268 0.84557 1.06897 1.02120 1.43859 1.03100 0.98845 0.99311 1.94544 1.76478 1.34091 1.35752 1.94476 1.56468 1.65769 1.21434 1.21037 0.95581 0.91385 0.97587 1.21197 0.91876 1.01297 0.99186 0.86257 0.87655 0.86631 0.87917 0.86920 0.94614 0.93993 0.92499 0.72681 0.83682 0.82821 0.80199 0.79516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 14.32 67.78 0.97 -1.51 16 2 C -0.20 -3.66 9.85 25.64 0.25 -3.40 16 3 C 0.11 2.43 5.66 85.63 0.48 2.91 16 4 N -0.52 -17.54 2.44 -718.54 -1.75 -19.30 16 5 C 0.26 11.83 4.92 85.63 0.42 12.26 16 6 C -0.53 -27.13 9.39 25.60 0.24 -26.89 16 7 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 8 C 0.02 1.06 5.46 84.65 0.46 1.52 16 9 N -0.92 -52.32 13.29 21.45 0.28 -52.03 16 10 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 C 0.57 19.14 7.46 179.05 1.34 20.48 16 15 S -0.72 -32.39 24.45 -56.49 -1.38 -33.77 16 16 N -0.63 -13.57 5.20 -189.99 -0.99 -14.56 16 17 C 0.20 4.23 5.91 38.16 0.23 4.45 16 18 C -0.09 -2.21 7.86 22.40 0.18 -2.03 16 19 C -0.05 -1.25 9.55 22.25 0.21 -1.04 16 20 C -0.06 -1.49 6.85 36.40 0.25 -1.24 16 21 N 0.03 0.95 4.45 -46.41 -0.21 0.75 16 22 O -0.20 -6.10 18.44 18.88 0.35 -5.75 16 23 O -0.16 -4.39 18.44 18.89 0.35 -4.05 16 24 C -0.04 -0.60 9.55 22.25 0.21 -0.39 16 25 C -0.11 -1.70 9.97 22.39 0.22 -1.47 16 26 H 0.12 1.59 8.06 -2.91 -0.02 1.56 16 27 H 0.11 1.73 7.84 -2.91 -0.02 1.71 16 28 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.10 2.44 7.72 -2.39 -0.02 2.42 16 30 H 0.11 1.57 6.29 -2.38 -0.01 1.56 16 31 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.04 2.30 6.58 -2.39 -0.02 2.29 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.43 5.64 6.52 -92.70 -0.60 5.03 16 35 H 0.15 4.45 6.27 -4.57 -0.03 4.42 16 36 H 0.15 3.65 7.60 -2.91 -0.02 3.63 16 37 H 0.18 2.13 7.60 -2.91 -0.02 2.11 16 38 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -73.09 349.10 4.63 -68.45 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.49 Total: 11.67 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.47 Total: 3.65 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.66 Total: -85.14 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.70 Total: -9.80 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -32.39 SS G_CDS: -1.38 Total: -33.77 kcal Total: -73.09 4.63 -68.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793247596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.089 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds