Wall clock time and date at job start Sat Apr 11 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50708 * 119.99809 * 2 1 4 4 N 1.46895 * 109.47367 * 125.00128 * 3 2 1 5 5 C 1.46908 * 110.99668 * 288.60165 * 4 3 2 6 6 C 1.50700 * 109.47163 * 160.03805 * 5 4 3 7 7 H 1.08001 * 119.99797 * 4.61650 * 6 5 4 8 8 C 1.37878 * 120.00129 * 184.61138 * 6 5 4 9 9 N 1.31511 * 120.00188 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47237 * 89.99617 * 10 8 6 12 12 H 1.48497 * 109.47056 * 210.00110 * 10 8 6 13 13 H 1.48502 * 109.47007 * 329.99530 * 10 8 6 14 14 C 1.46895 * 111.00259 * 164.64720 * 4 3 2 15 15 N 1.46498 * 109.47346 * 278.95009 * 14 4 3 16 16 N 1.40270 * 126.56251 * 285.28933 * 15 14 4 17 17 C 1.30428 * 107.71610 * 180.15958 * 16 15 14 18 18 C 1.47183 * 125.49141 * 179.85943 * 17 16 15 19 19 C 1.35083 * 125.28048 * 179.72275 * 18 17 16 20 20 C 1.37804 * 114.67180 * 180.28777 * 19 18 17 21 21 C 1.33710 * 115.09451 * 359.48983 * 20 19 18 22 22 S 1.75856 * 109.78218 * 0.47920 * 21 20 19 23 23 O 1.35146 * 109.01452 * 359.59220 * 17 16 15 24 24 C 1.34338 * 108.86642 * 0.26141 * 23 17 16 25 25 O 1.21703 * 126.23872 * 179.97438 * 24 23 17 26 26 H 1.08002 * 120.00234 * 0.02562 * 1 2 3 27 27 H 1.08010 * 119.99650 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00667 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46796 * 4.99372 * 3 2 1 30 30 H 1.09002 * 109.46862 * 244.99554 * 3 2 1 31 31 H 1.09006 * 109.46908 * 280.03693 * 5 4 3 32 32 H 1.08993 * 109.47154 * 40.03577 * 5 4 3 33 33 H 0.96998 * 120.00058 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.47268 * 158.94842 * 14 4 3 35 35 H 1.09005 * 109.47006 * 38.95281 * 14 4 3 36 36 H 1.08003 * 122.66144 * 0.02562 * 19 18 17 37 37 H 1.08007 * 122.45229 * 179.70570 * 20 19 18 38 38 H 1.08002 * 125.10781 * 180.25208 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9962 1.3321 1.1344 5 6 2.2746 1.4751 2.4060 6 6 3.1571 1.0177 3.5387 7 1 4.1790 0.7274 3.3437 8 6 2.6601 0.9698 4.8239 9 7 3.4301 0.5701 5.8122 10 14 0.8925 1.4712 5.1610 11 1 0.0095 0.2835 5.0407 12 1 0.7892 2.0280 6.5338 13 1 0.4738 2.5011 4.1765 14 6 3.9925 2.3993 0.9716 15 7 5.0564 1.9415 0.0746 16 7 6.0785 1.0327 0.3860 17 6 6.8216 0.8917 -0.6765 18 6 8.0088 0.0279 -0.7806 19 6 8.7724 -0.1188 -1.8852 20 6 9.8304 -0.9901 -1.7414 21 6 9.9457 -1.5474 -0.5315 22 16 8.6530 -0.9736 0.5137 23 8 6.3225 1.6622 -1.6683 24 6 5.2375 2.3093 -1.2115 25 8 4.5444 3.0860 -1.8420 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3584 2.1317 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 2.0048 2.5207 2.5551 32 1 1.3707 0.8666 2.3812 33 1 3.0806 0.5368 6.7164 34 1 4.4190 2.6495 1.9431 35 1 3.5137 3.2816 0.5469 36 1 8.5675 0.4019 -2.8089 37 1 10.5182 -1.2044 -2.5461 38 1 10.7148 -2.2477 -0.2409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793573492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:55 Heat of formation + Delta-G solvation = 77.520909 kcal Electronic energy + Delta-G solvation = -24223.490832 eV Core-core repulsion = 20582.856052 eV Total energy + Delta-G solvation = -3640.634780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.19775 -38.37495 -37.81046 -37.40011 -35.59448 -33.32644 -32.59530 -31.87162 -29.61813 -28.03235 -26.59147 -24.90510 -23.95225 -22.85571 -22.19787 -20.78463 -19.56625 -19.41588 -18.41990 -17.61125 -17.23799 -16.84496 -16.32123 -15.73494 -15.60699 -15.35114 -14.75808 -14.23923 -14.04195 -13.78932 -13.70114 -13.26151 -12.99004 -12.83460 -12.57867 -12.48709 -12.20280 -12.05452 -11.83826 -11.75122 -11.37160 -11.00406 -10.81385 -10.72462 -10.64020 -10.62637 -10.02810 -9.71376 -9.37825 -9.06208 -8.74594 -8.62481 -8.41612 -7.76613 -6.10216 -4.08787 0.20808 1.03013 1.69825 1.80869 1.90392 2.30684 2.58698 2.61825 2.66959 3.24525 3.32123 3.33425 4.10803 4.36523 4.58635 4.73453 4.82397 5.09309 5.20646 5.23107 5.27393 5.32641 5.44104 5.46574 5.72333 5.74781 5.85368 5.89154 5.94367 6.06122 6.10752 6.20540 6.61524 6.68150 6.91418 7.00876 7.39081 7.48565 7.59416 7.71926 7.77778 8.54778 9.01460 9.50235 11.02502 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.003968 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.482103 B = 7055.049032 C = 8335.744117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C 0.074 3.926 4 N -0.534 5.534 5 C 0.169 3.831 6 C -0.514 4.514 7 H 0.086 0.914 8 C 0.073 3.927 9 N -0.895 5.895 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.319 3.681 15 N -0.428 5.428 16 N -0.214 5.214 17 C 0.286 3.714 18 C -0.146 4.146 19 C -0.084 4.084 20 C -0.143 4.143 21 C -0.211 4.211 22 S 0.228 5.772 23 O -0.269 6.269 24 C 0.603 3.397 25 O -0.493 6.493 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.038 0.962 30 H 0.069 0.931 31 H -0.006 1.006 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -2.582 -14.050 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.142 4.142 3 C -0.053 4.053 4 N -0.259 5.259 5 C 0.044 3.956 6 C -0.552 4.552 7 H 0.104 0.896 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.193 1.193 14 C 0.110 3.890 15 N -0.260 5.260 16 N -0.043 5.043 17 C 0.062 3.938 18 C -0.266 4.266 19 C -0.120 4.120 20 C -0.173 4.173 21 C -0.349 4.349 22 S 0.494 5.506 23 O -0.166 6.166 24 C 0.355 3.645 25 O -0.376 6.376 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.012 0.988 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.467 -3.025 -11.901 15.505 hybrid contribution -1.013 1.328 -1.886 2.519 sum 8.454 -1.697 -13.787 16.261 Atomic orbital electron populations 1.23742 0.95869 1.01440 1.03098 1.22822 0.95400 0.98551 0.97406 1.21329 0.94556 0.94984 0.94449 1.61510 1.15352 1.45579 1.03462 1.20200 0.94642 0.95300 0.85445 1.21027 1.00232 1.44445 0.89515 0.89634 1.24853 0.97162 0.94769 0.96111 1.69883 1.36075 1.47169 1.00175 0.86944 0.86059 0.79414 0.77841 1.20071 1.21114 1.19308 1.22102 0.83263 0.90061 0.93548 1.50592 1.25549 1.38742 1.11134 1.77861 0.98514 1.08495 1.19405 1.22394 0.95118 0.93914 0.82415 1.21227 0.98085 1.06163 1.01103 1.20435 0.94203 0.99004 0.98380 1.19993 0.99876 0.99255 0.98153 1.26200 1.04138 1.06453 0.98074 1.84944 1.19205 1.36030 1.10405 1.85112 1.40312 1.51936 1.39263 1.19405 0.80218 0.82318 0.82587 1.91181 1.47187 1.36374 1.62839 0.89019 0.88553 0.87023 0.94394 0.91314 0.98799 0.94563 0.92586 0.85713 0.90278 0.83230 0.83475 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 14.32 29.02 0.42 -2.66 16 2 C -0.12 -2.10 8.72 -36.02 -0.31 -2.41 16 3 C 0.07 1.33 5.26 -4.97 -0.03 1.31 16 4 N -0.53 -10.93 4.47 -241.42 -1.08 -12.01 16 5 C 0.17 3.91 3.60 -4.97 -0.02 3.89 16 6 C -0.51 -13.98 9.09 -34.44 -0.31 -14.30 16 7 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 10 Si 0.87 20.83 27.38 -169.99 -4.65 16.17 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.15 6.68 56.52 0.38 -5.77 16 14 C 0.32 5.99 6.03 -63.32 -0.38 5.61 16 15 N -0.43 -7.86 3.75 -68.29 -0.26 -8.12 16 16 N -0.21 -3.86 12.59 31.85 0.40 -3.46 16 17 C 0.29 4.43 8.11 -14.52 -0.12 4.31 16 18 C -0.15 -1.80 6.42 -37.07 -0.24 -2.04 16 19 C -0.08 -0.81 10.08 -40.86 -0.41 -1.22 16 20 C -0.14 -1.08 10.16 -41.33 -0.42 -1.50 16 21 C -0.21 -1.60 11.23 29.14 0.33 -1.27 16 22 S 0.23 2.48 23.30 -107.50 -2.50 -0.02 16 23 O -0.27 -4.36 10.70 -20.96 -0.22 -4.59 16 24 C 0.60 10.90 8.74 54.15 0.47 11.37 16 25 O -0.49 -9.68 17.72 -19.01 -0.34 -10.02 16 26 H 0.09 1.31 7.84 -52.49 -0.41 0.90 16 27 H 0.10 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.04 0.65 7.71 -51.93 -0.40 0.25 16 30 H 0.07 1.24 7.37 -51.93 -0.38 0.85 16 31 H -0.01 -0.13 7.37 -51.93 -0.38 -0.51 16 32 H 0.04 0.85 6.27 -51.93 -0.33 0.53 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.13 2.47 7.26 -51.93 -0.38 2.09 16 35 H 0.08 1.35 7.66 -51.93 -0.40 0.95 16 36 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -31.63 350.12 -8.10 -39.73 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.37 Total: -0.17 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.12 Total: 3.04 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.16 Total: -49.42 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.56 Total: -14.60 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.65 Total: 16.17 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.50 Total: -0.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.63 -8.10 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793573492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.251 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds