Wall clock time and date at job start Sat Apr 11 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00032 * 2 1 4 4 H 1.48505 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47390 * 300.00318 * 3 2 1 6 6 H 1.48505 * 109.47198 * 60.00093 * 3 2 1 7 7 C 1.37874 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47326 * 180.02562 * 10 9 7 12 12 O 1.20831 * 120.00135 * 359.97438 * 11 10 9 13 13 O 1.34237 * 120.00503 * 179.97438 * 11 10 9 14 14 C 1.45195 * 117.00399 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47432 * 179.97438 * 14 13 11 16 16 O 1.21291 * 119.99517 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00049 * 179.97438 * 15 14 13 18 18 C 1.40102 * 119.99759 * 185.27812 * 17 15 14 19 19 C 1.38848 * 119.99867 * 213.34287 * 18 17 15 20 20 C 1.38169 * 120.06309 * 179.76874 * 19 18 17 21 21 C 1.38562 * 120.12162 * 0.41956 * 20 19 18 22 22 C 1.39274 * 119.94385 * 359.57263 * 21 20 19 23 23 C 1.38492 * 119.89465 * 0.22003 * 22 21 20 24 24 O 1.36508 * 108.64808 * 180.25232 * 22 21 20 25 25 C 1.43984 * 105.49285 * 342.69964 * 24 22 21 26 26 O 1.36593 * 131.44388 * 179.88417 * 21 20 19 27 27 H 0.97001 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47389 * 60.00251 * 9 7 2 29 29 H 1.09003 * 109.47050 * 299.99554 * 9 7 2 30 30 H 1.09002 * 109.47563 * 59.99387 * 10 9 7 31 31 H 1.09010 * 109.47085 * 299.99926 * 10 9 7 32 32 H 1.09006 * 109.46808 * 60.00077 * 14 13 11 33 33 H 1.08997 * 109.46989 * 300.00251 * 14 13 11 34 34 H 0.96994 * 120.00195 * 5.27990 * 17 15 14 35 35 H 1.07991 * 119.96639 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.93727 * 180.28367 * 20 19 18 37 37 H 1.08000 * 120.01319 * 180.02562 * 23 22 21 38 38 H 1.08998 * 110.57134 * 268.58829 * 25 24 22 39 39 H 1.08993 * 110.57061 * 145.71952 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4919 -4.9671 -0.0033 12 8 0.2836 -4.9672 -0.0041 13 8 2.1630 -6.1297 -0.0039 14 6 1.3722 -7.3474 -0.0051 15 6 2.2902 -8.5426 -0.0063 16 8 3.4926 -8.3836 -0.0057 17 7 1.7750 -9.7879 -0.0069 18 6 2.6238 -10.8971 0.1036 19 6 2.3056 -12.0822 -0.5462 20 6 3.1441 -13.1754 -0.4420 21 6 4.3000 -13.0952 0.3178 22 6 4.6219 -11.9078 0.9705 23 6 3.7830 -10.8112 0.8621 24 8 5.7987 -12.0828 1.6399 25 6 5.9843 -13.5080 1.7253 26 8 5.2760 -14.0146 0.5787 27 1 -0.4850 0.8401 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8714 -3.6047 0.8890 31 1 2.8727 -3.6039 -0.8910 32 1 0.7437 -7.3716 -0.8953 33 1 0.7431 -7.3729 0.8847 34 1 0.8167 -9.9163 -0.0840 35 1 1.4035 -12.1485 -1.1362 36 1 2.8969 -14.0948 -0.9520 37 1 4.0310 -9.8893 1.3671 38 1 5.5495 -13.8963 2.6464 39 1 7.0428 -13.7607 1.6641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:18 Heat of formation + Delta-G solvation = -151.860489 kcal Electronic energy + Delta-G solvation = -25167.746240 eV Core-core repulsion = 21042.119114 eV Total energy + Delta-G solvation = -4125.627126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52933 -40.82044 -39.89909 -38.00434 -36.62790 -36.15105 -34.81253 -33.62271 -31.30623 -30.96202 -30.25085 -28.33949 -26.21561 -25.79586 -23.68098 -23.23106 -22.21920 -21.00983 -19.94900 -19.10284 -18.31798 -17.96978 -17.52246 -17.07343 -16.87185 -16.66598 -16.35852 -15.81356 -15.29649 -15.21046 -14.85181 -14.47663 -14.32605 -14.18142 -13.96305 -13.64067 -13.36988 -13.27317 -13.19477 -12.51956 -12.32362 -12.27657 -11.92107 -11.61020 -11.24975 -10.98983 -10.66502 -10.64174 -10.36982 -10.19932 -10.08444 -10.02951 -9.61782 -9.18836 -9.09103 -8.39928 -8.18613 -6.03739 -4.08386 0.62404 0.81237 2.06185 2.13041 2.40376 2.68514 3.03169 3.19011 3.30323 3.31286 3.38154 3.42433 4.10558 4.19384 4.28723 4.43441 4.48841 4.59440 4.62690 4.83904 4.88917 4.90105 5.11901 5.21179 5.32093 5.39156 5.65034 5.70264 5.75015 5.83698 6.09203 6.14409 6.16981 6.48346 6.73090 6.81054 6.85432 7.63818 7.65977 7.69438 7.95256 8.14756 8.33812 8.98773 9.55987 11.07297 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.001853 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.544699 B =15106.795627 C =15826.376576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.102 4.102 11 C 0.460 3.540 12 O -0.504 6.504 13 O -0.342 6.342 14 C 0.047 3.953 15 C 0.516 3.484 16 O -0.489 6.489 17 N -0.670 5.670 18 C 0.165 3.835 19 C -0.135 4.135 20 C -0.079 4.079 21 C 0.012 3.988 22 C 0.056 3.944 23 C -0.106 4.106 24 O -0.305 6.305 25 C 0.213 3.787 26 O -0.310 6.310 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -30.980 1.598 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.139 4.139 11 C 0.304 3.696 12 O -0.390 6.390 13 O -0.259 6.259 14 C -0.030 4.030 15 C 0.302 3.698 16 O -0.360 6.360 17 N -0.319 5.319 18 C 0.071 3.929 19 C -0.156 4.156 20 C -0.098 4.098 21 C -0.032 4.032 22 C 0.011 3.989 23 C -0.126 4.126 24 O -0.221 6.221 25 C 0.101 3.899 26 O -0.226 6.226 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.254 0.746 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.451 -30.717 1.606 31.238 hybrid contribution -0.078 0.622 0.097 0.634 sum 5.373 -30.095 1.703 30.618 Atomic orbital electron populations 1.70001 1.06092 1.26680 1.50056 1.25021 0.94874 0.99381 0.95089 0.86474 0.80069 0.83472 0.77605 1.19609 1.20963 1.20973 1.21195 0.93191 0.90566 1.51663 0.92160 1.19044 0.93207 0.89244 0.98937 1.21817 1.00749 0.86953 1.04416 1.24983 0.88001 0.85274 0.71347 1.90646 1.15739 1.87431 1.45208 1.86673 1.40630 1.13623 1.85001 1.22455 0.92723 0.82498 1.05369 1.20487 0.89588 0.83637 0.76064 1.90801 1.15065 1.85266 1.44889 1.43323 1.10669 1.03887 1.73987 1.17130 0.92156 0.87270 0.96385 1.20631 1.01846 0.91693 1.01401 1.19794 0.90380 0.99852 0.99748 1.19794 0.92483 0.88247 1.02722 1.19478 0.87190 0.95050 0.97227 1.19940 0.93209 0.98348 1.01134 1.87412 1.35657 1.25044 1.73992 1.25644 0.99634 0.75748 0.88848 1.87372 1.43022 1.44480 1.47713 0.92895 0.95512 0.95523 0.88628 0.88632 0.87897 0.87777 0.74561 0.83843 0.84134 0.83296 0.89791 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 10 C -0.10 -2.06 5.75 -27.89 -0.16 -2.22 16 11 C 0.46 8.72 7.96 36.00 0.29 9.01 16 12 O -0.50 -10.67 15.73 -18.75 -0.30 -10.96 16 13 O -0.34 -5.62 9.75 -45.92 -0.45 -6.07 16 14 C 0.05 0.55 5.95 36.01 0.21 0.77 16 15 C 0.52 5.93 7.65 -10.99 -0.08 5.85 16 16 O -0.49 -7.73 14.19 -14.11 -0.20 -7.93 16 17 N -0.67 -5.21 5.35 -9.84 -0.05 -5.26 16 18 C 0.17 1.50 6.28 -83.64 -0.53 0.97 16 19 C -0.14 -0.91 9.96 -39.38 -0.39 -1.30 16 20 C -0.08 -0.58 10.05 -39.49 -0.40 -0.98 16 21 C 0.01 0.12 7.15 -39.08 -0.28 -0.16 16 22 C 0.06 0.62 7.15 -39.10 -0.28 0.35 16 23 C -0.11 -1.20 8.67 -39.28 -0.34 -1.54 16 24 O -0.31 -3.31 11.40 -45.72 -0.52 -3.83 16 25 C 0.21 1.47 8.89 101.05 0.90 2.37 16 26 O -0.31 -2.89 11.41 -46.00 -0.52 -3.42 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 32 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.10 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.42 1.59 8.82 -40.82 -0.36 1.23 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.15 1.94 6.41 -52.49 -0.34 1.60 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -36.79 348.67 -7.12 -43.91 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.46 Total: -2.48 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.59 Total: 0.42 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.68 Total: -31.28 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.99 Total: -32.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.79 -7.12 -43.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.946 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds