Wall clock time and date at job start Sat Apr 11 2020 00:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99407 * 2 1 4 4 H 1.48497 * 109.47012 * 239.99769 * 3 2 1 5 5 H 1.48498 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46738 * 120.00276 * 3 2 1 7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10 14 14 C 1.34907 * 117.00058 * 180.02562 * 13 12 11 15 15 O 1.21621 * 120.00192 * 359.97438 * 14 13 12 16 16 C 1.46233 * 119.99579 * 179.97438 * 14 13 12 17 17 C 1.34919 * 119.99793 * 179.97438 * 16 14 13 18 18 C 1.47165 * 119.99942 * 179.97438 * 17 16 14 19 19 C 1.39853 * 120.17400 * 359.72829 * 18 17 16 20 20 C 1.37889 * 119.82222 * 179.73846 * 19 18 17 21 21 C 1.38406 * 120.17554 * 0.54174 * 20 19 18 22 22 N 1.48017 * 119.82503 * 179.74221 * 21 20 19 23 23 O 1.21807 * 119.99814 * 179.97438 * 22 21 20 24 24 O 1.21795 * 120.00352 * 359.97096 * 22 21 20 25 25 C 1.38408 * 120.34884 * 359.71164 * 21 20 19 26 26 C 1.37886 * 120.16849 * 0.02562 * 25 21 20 27 27 H 0.96998 * 120.00659 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47551 * 60.00178 * 9 7 2 29 29 H 1.09004 * 109.47507 * 299.99841 * 9 7 2 30 30 H 1.09004 * 109.47487 * 59.99783 * 11 10 9 31 31 H 1.09002 * 109.46902 * 300.00077 * 11 10 9 32 32 H 1.09001 * 109.47289 * 304.99698 * 12 11 10 33 33 H 1.09004 * 109.47261 * 184.99954 * 12 11 10 34 34 H 1.07995 * 120.00327 * 359.97438 * 16 14 13 35 35 H 1.08004 * 119.99586 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.08601 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.90907 * 180.25209 * 20 19 18 38 38 H 1.07994 * 119.91527 * 180.02562 * 25 21 20 39 39 H 1.08005 * 120.08661 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5654 -4.8753 -0.0011 12 6 2.6484 -5.9561 -0.0017 13 8 3.3879 -5.8901 1.2193 14 6 4.3877 -6.7817 1.3788 15 8 4.6241 -7.5931 0.5043 16 6 5.1872 -6.7724 2.6032 17 6 6.1868 -7.6643 2.7630 18 6 6.9917 -7.6546 3.9949 19 6 6.7274 -6.7188 5.0000 20 6 7.4826 -6.7197 6.1536 21 6 8.5072 -7.6362 6.3137 22 7 9.3167 -7.6266 7.5528 23 8 10.2190 -8.4321 7.6972 24 8 9.0808 -6.8132 8.4281 25 6 8.7785 -8.5622 5.3214 26 6 8.0288 -8.5776 4.1643 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 0.9455 -4.9822 -0.8913 31 1 0.9450 -4.9827 0.8886 32 1 3.3219 -5.7951 -0.8435 33 1 2.1824 -6.9374 -0.0917 34 1 4.9775 -6.0515 3.3796 35 1 6.3967 -8.3849 1.9863 36 1 5.9314 -5.9997 4.8744 37 1 7.2770 -6.0002 6.9325 38 1 9.5794 -9.2745 5.4538 39 1 8.2419 -9.3005 3.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:22 Heat of formation + Delta-G solvation = -94.939529 kcal Electronic energy + Delta-G solvation = -24400.859757 eV Core-core repulsion = 20277.700910 eV Total energy + Delta-G solvation = -4123.158848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.56199 -40.64028 -40.00671 -37.35787 -36.94524 -36.28841 -34.98959 -32.82797 -32.16257 -31.35646 -30.13861 -27.43198 -26.90563 -24.62572 -23.88588 -22.73311 -22.37767 -21.72729 -20.09879 -19.82866 -19.04103 -18.27893 -17.90623 -16.92812 -16.69891 -16.48743 -16.29323 -15.78796 -15.40488 -15.33759 -14.73125 -14.48346 -14.38149 -14.02177 -13.81899 -13.37835 -13.13147 -12.94009 -12.55165 -12.06508 -11.97566 -11.85316 -11.58776 -11.52219 -11.50898 -11.35157 -11.04109 -10.93990 -10.83626 -10.66432 -10.46824 -10.10985 -10.05250 -9.33605 -9.20267 -8.93944 -8.27633 -6.16910 -4.19080 -0.95240 0.34264 0.35437 0.96645 1.22916 2.52057 2.57628 2.90770 3.28202 3.31240 3.34773 3.72368 3.84525 3.87707 4.20138 4.22701 4.26880 4.48996 4.61191 4.70221 4.72865 5.03200 5.10579 5.11821 5.13729 5.18672 5.19542 5.35748 5.55063 5.63510 5.74726 5.77655 5.86627 5.97761 5.98951 6.39611 6.98682 7.23022 7.33328 7.61432 7.72204 8.06514 8.45429 8.92749 9.45807 10.94455 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.002012 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.144730 B =13915.154828 C =15727.528622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.328 6.328 14 C 0.491 3.509 15 O -0.512 6.512 16 C -0.145 4.145 17 C -0.044 4.044 18 C -0.013 4.013 19 C -0.104 4.104 20 C -0.051 4.051 21 C -0.043 4.043 22 N 0.027 4.973 23 O -0.161 6.161 24 O -0.157 6.157 25 C -0.055 4.055 26 C -0.098 4.098 27 H 0.265 0.735 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.536 -19.599 9.504 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C -0.001 4.001 13 O -0.243 6.243 14 C 0.337 3.663 15 O -0.403 6.403 16 C -0.164 4.164 17 C -0.062 4.062 18 C -0.013 4.013 19 C -0.122 4.122 20 C -0.070 4.070 21 C -0.126 4.126 22 N 0.547 4.453 23 O -0.376 6.376 24 O -0.374 6.374 25 C -0.074 4.074 26 C -0.116 4.116 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.211 -19.654 8.626 25.204 hybrid contribution 0.158 0.853 0.168 0.884 sum 13.369 -18.801 8.794 24.689 Atomic orbital electron populations 1.69946 1.06095 1.27377 1.50295 1.24954 0.95006 0.99469 0.95060 0.86378 0.79310 0.81812 0.78872 1.20001 1.21110 1.19973 1.20992 0.94037 0.89280 1.51173 0.91582 1.20241 0.88725 0.83434 0.95549 1.87911 1.35382 1.12610 1.95239 1.22329 0.93156 0.85428 1.00693 1.22901 0.93818 0.98957 0.84466 1.86289 1.42977 1.53445 1.41605 1.21128 0.79442 0.78547 0.87167 1.90876 1.68075 1.38006 1.43334 1.22503 0.96078 1.01168 0.96647 1.22374 0.91954 0.97021 0.94843 1.19412 0.94211 0.94172 0.93525 1.21599 1.00032 0.98894 0.91725 1.21051 0.91263 0.96016 0.98648 1.21316 0.99015 1.04371 0.87854 1.43640 1.00227 0.99302 1.02172 1.94547 1.23154 1.34537 1.85399 1.94563 1.73854 1.33546 1.35395 1.21008 0.99156 0.96083 0.91139 1.21420 0.94092 0.98922 0.97170 0.92524 0.97563 0.97470 0.91839 0.93130 0.90524 0.90498 0.83397 0.83374 0.82542 0.82343 0.82524 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.93 9.43 -34.44 -0.32 -15.26 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.19 5.19 5.69 36.00 0.20 5.40 16 10 O -0.39 -9.16 10.29 -40.08 -0.41 -9.57 16 11 C 0.06 1.07 6.32 37.16 0.23 1.30 16 12 C 0.07 1.07 5.76 37.16 0.21 1.28 16 13 O -0.33 -4.96 10.09 -44.17 -0.45 -5.40 16 14 C 0.49 6.28 7.87 33.94 0.27 6.54 16 15 O -0.51 -7.42 16.00 -19.36 -0.31 -7.73 16 16 C -0.15 -1.25 9.54 -37.55 -0.36 -1.61 16 17 C -0.04 -0.29 9.46 -37.14 -0.35 -0.64 16 18 C -0.01 -0.07 5.87 -105.06 -0.62 -0.69 16 19 C -0.10 -0.58 9.41 -39.11 -0.37 -0.95 16 20 C -0.05 -0.33 9.53 -39.65 -0.38 -0.71 16 21 C -0.04 -0.33 6.86 -79.82 -0.55 -0.88 16 22 N 0.03 0.28 4.45 34.02 0.15 0.43 16 23 O -0.16 -1.77 18.43 -29.46 -0.54 -2.31 16 24 O -0.16 -1.78 18.43 -29.46 -0.54 -2.32 16 25 C -0.05 -0.31 9.54 -39.65 -0.38 -0.69 16 26 C -0.10 -0.45 9.80 -39.10 -0.38 -0.83 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 33 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 34 H 0.15 0.99 6.08 -52.49 -0.32 0.67 16 35 H 0.15 0.92 7.52 -52.48 -0.39 0.52 16 36 H 0.16 0.63 6.17 -52.49 -0.32 0.31 16 37 H 0.16 0.86 7.60 -52.48 -0.40 0.47 16 38 H 0.16 0.68 7.59 -52.49 -0.40 0.28 16 39 H 0.15 0.32 8.06 -52.48 -0.42 -0.11 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -34.46 360.34 -8.18 -42.63 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -4.34 Total: -5.75 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.88 Total: -6.23 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.89 Total: -25.18 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -2.25 Total: -27.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.46 -8.18 -42.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.308 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds