Wall clock time and date at job start Sat Apr 11 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31339 * 1 3 3 Si 1.86798 * 119.99624 * 2 1 4 4 H 1.48508 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47402 * 299.99494 * 3 2 1 6 6 H 1.48494 * 109.47457 * 60.00000 * 3 2 1 7 7 C 1.39023 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99509 * 198.16332 * 7 2 1 9 9 N 1.36870 * 120.00198 * 18.16460 * 7 2 1 10 10 C 1.38251 * 125.62169 * 217.88634 * 9 7 2 11 11 C 1.46716 * 125.44859 * 0.03714 * 10 9 7 12 12 O 1.21587 * 119.99941 * 185.29581 * 11 10 9 13 13 O 1.34864 * 119.99885 * 5.01179 * 11 10 9 14 14 C 1.45195 * 117.00222 * 175.07764 * 13 11 10 15 15 C 1.53005 * 109.47546 * 183.89041 * 14 13 11 16 16 H 1.08997 * 115.54389 * 32.26606 * 15 14 13 17 17 C 1.52997 * 117.49936 * 177.93481 * 15 14 13 18 18 C 1.52995 * 117.50066 * 246.55949 * 15 14 13 19 19 F 1.39908 * 117.49760 * 359.97438 * 18 15 14 20 20 F 1.39895 * 117.49893 * 145.01793 * 18 15 14 21 21 C 1.36217 * 109.10259 * 179.77207 * 10 9 7 22 22 C 1.41651 * 107.74226 * 0.22656 * 21 10 9 23 23 C 1.40044 * 133.33743 * 180.02562 * 22 21 10 24 24 C 1.36577 * 119.82922 * 179.97438 * 23 22 21 25 25 C 1.38855 * 120.60279 * 0.02562 * 24 23 22 26 26 C 1.37841 * 120.63690 * 359.97438 * 25 24 23 27 27 C 1.37823 * 125.62325 * 38.05797 * 9 7 2 28 28 H 0.96998 * 120.00710 * 4.69669 * 1 2 3 29 29 H 1.09005 * 109.47318 * 303.89771 * 14 13 11 30 30 H 1.09001 * 109.47204 * 63.89347 * 14 13 11 31 31 H 1.08999 * 117.50255 * 214.97721 * 17 15 14 32 32 H 1.09005 * 117.49849 * 359.97438 * 17 15 14 33 33 H 1.08005 * 126.12715 * 180.24884 * 21 10 9 34 34 H 1.07997 * 120.08742 * 359.97438 * 23 22 21 35 35 H 1.07996 * 119.69604 * 180.02562 * 24 23 22 36 36 H 1.08001 * 119.68600 * 180.02562 * 25 24 23 37 37 H 1.08006 * 120.08933 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.7074 1.3465 -0.0006 5 1 1.8886 2.3964 -1.2125 6 1 1.8885 2.3965 1.2124 7 6 2.0085 -1.2040 0.0005 8 1 3.0482 -1.2271 0.2921 9 7 1.3753 -2.3600 -0.3685 10 6 1.5655 -3.6017 0.2087 11 6 2.4800 -3.8933 1.3184 12 8 2.6418 -5.0404 1.6874 13 8 3.1454 -2.8894 1.9253 14 6 3.9475 -3.2365 3.0847 15 6 4.5440 -1.9649 3.6915 16 1 3.9323 -1.0676 3.5977 17 6 5.3878 -2.1154 4.9589 18 6 6.0630 -1.7951 3.6238 19 9 6.8004 -2.8147 3.0123 20 9 6.5609 -0.4998 3.4461 21 6 0.7637 -4.5101 -0.4137 22 6 0.0421 -3.8282 -1.4241 23 6 -0.9113 -4.2355 -2.3655 24 6 -1.4429 -3.3236 -3.2322 25 6 -1.0465 -1.9935 -3.1898 26 6 -0.1098 -1.5686 -2.2722 27 6 0.4455 -2.4786 -1.3788 28 1 -0.4851 0.8372 -0.0688 29 1 3.3202 -3.7328 3.8252 30 1 4.7522 -3.9068 2.7825 31 1 5.3316 -1.3169 5.6987 32 1 5.5176 -3.1203 5.3607 33 1 0.6910 -5.5618 -0.1788 34 1 -1.2253 -5.2680 -2.4062 35 1 -2.1783 -3.6400 -3.9571 36 1 -1.4769 -1.2848 -3.8819 37 1 0.1924 -0.5320 -2.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816415686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:35 Heat of formation + Delta-G solvation = -104.981661 kcal Electronic energy + Delta-G solvation = -26646.447752 eV Core-core repulsion = 22411.765930 eV Total energy + Delta-G solvation = -4234.681823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.096 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.76713 -48.46552 -42.28466 -41.02301 -38.23313 -37.63095 -36.86386 -35.45813 -32.51734 -30.87225 -30.19615 -28.76320 -26.78732 -25.12895 -23.62371 -22.78188 -22.26889 -22.09388 -21.03414 -19.79657 -19.14647 -18.69709 -18.07820 -17.53618 -17.38726 -17.13023 -16.82622 -16.49013 -16.32712 -15.42312 -15.29876 -15.12001 -14.80276 -14.72482 -14.68274 -14.62399 -14.33646 -14.26619 -13.82982 -13.63102 -13.54828 -13.01539 -12.90535 -12.77354 -12.37389 -12.29531 -12.18893 -12.00536 -11.86533 -11.68115 -11.50578 -10.95865 -10.91822 -10.45543 -9.02073 -8.73013 -8.36217 -6.38830 -0.09914 1.07208 1.15244 1.35240 1.37483 1.48879 1.51271 1.94237 2.04954 2.09454 2.28278 2.72607 2.85391 3.17703 3.24205 3.34003 3.51803 3.89133 4.00379 4.11716 4.19383 4.24190 4.42514 4.49472 4.52547 4.68949 4.71569 4.78991 4.82261 4.95702 5.13492 5.17174 5.24637 5.32181 5.43251 5.71800 5.88672 5.94644 6.14712 6.27454 6.55210 6.66988 6.97033 7.41489 8.35255 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.004646 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.425483 B = 6025.418948 C = 7614.872506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.023 3.977 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.257 5.257 10 C -0.054 4.054 11 C 0.549 3.451 12 O -0.534 6.534 13 O -0.343 6.343 14 C 0.083 3.917 15 C -0.164 4.164 16 H 0.140 0.860 17 C -0.110 4.110 18 C 0.168 3.832 19 F -0.172 7.172 20 F -0.171 7.171 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.087 4.087 24 C -0.151 4.151 25 C -0.133 4.133 26 C -0.086 4.086 27 C 0.065 3.935 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -0.598 5.509 7.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.126 0.874 9 N 0.080 4.920 10 C -0.166 4.166 11 C 0.397 3.603 12 O -0.426 6.426 13 O -0.260 6.260 14 C 0.010 3.990 15 C -0.184 4.184 16 H 0.158 0.842 17 C -0.147 4.147 18 C 0.132 3.868 19 F -0.152 7.152 20 F -0.151 7.151 21 C -0.190 4.190 22 C -0.157 4.157 23 C -0.105 4.105 24 C -0.169 4.169 25 C -0.153 4.153 26 C -0.106 4.106 27 C -0.051 4.051 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.765 -0.462 5.865 7.571 hybrid contribution 0.625 0.831 -0.015 1.040 sum 5.390 0.370 5.850 7.963 Atomic orbital electron populations 1.70084 1.07697 1.30644 1.39070 1.26382 0.95943 1.03033 0.93363 0.85002 0.78958 0.76284 0.79086 1.18507 1.18742 1.19020 1.20114 0.96443 0.83702 1.48859 0.87436 1.40302 1.27039 1.05388 1.19272 1.19523 1.07099 0.88891 1.01116 1.19897 0.77163 0.82614 0.80600 1.90757 1.64321 1.21894 1.65647 1.86824 1.57748 1.38588 1.42793 1.22661 0.94590 0.95745 0.86037 1.23568 0.91197 1.01402 1.02189 0.84231 1.24613 0.91972 1.08680 0.89433 1.20555 0.89786 0.72715 1.03791 1.92984 1.79084 1.57996 1.85168 1.93003 1.89221 1.36430 1.96460 1.20611 1.00031 0.98662 0.99683 1.18345 1.03190 0.92717 1.01398 1.20501 0.95517 1.00284 0.94228 1.20781 1.02392 0.92772 1.01003 1.21052 0.97926 0.97104 0.99215 1.20203 0.98181 0.97312 0.94863 1.18655 0.98033 0.95281 0.93094 0.90311 0.88203 0.90401 0.82218 0.83131 0.83033 0.84344 0.83314 0.84380 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.29 10.88 21.67 0.24 -43.06 16 2 C 0.02 1.13 4.42 84.95 0.38 1.50 16 3 Si 0.99 38.21 29.59 68.60 2.03 40.24 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.36 -18.99 8.74 84.10 0.74 -18.26 16 8 H 0.11 5.59 6.85 -2.91 -0.02 5.57 16 9 N -0.26 -13.68 2.83 -331.41 -0.94 -14.61 16 10 C -0.05 -2.70 6.76 39.88 0.27 -2.43 16 11 C 0.55 25.39 7.90 70.04 0.55 25.94 16 12 O -0.53 -24.40 16.64 19.55 0.33 -24.07 16 13 O -0.34 -14.46 8.01 -57.77 -0.46 -14.92 16 14 C 0.08 2.54 5.75 71.98 0.41 2.96 16 15 C -0.16 -4.06 6.05 -10.79 -0.07 -4.13 16 16 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 17 C -0.11 -1.64 10.22 30.59 0.31 -1.33 16 18 C 0.17 4.18 5.20 30.59 0.16 4.34 16 19 F -0.17 -4.89 16.49 44.97 0.74 -4.15 16 20 F -0.17 -4.75 17.60 44.97 0.79 -3.96 16 21 C -0.16 -7.56 10.55 22.64 0.24 -7.32 16 22 C -0.15 -7.07 6.16 -21.34 -0.13 -7.20 16 23 C -0.09 -3.27 10.06 22.32 0.22 -3.04 16 24 C -0.15 -5.16 9.97 22.03 0.22 -4.94 16 25 C -0.13 -5.02 10.02 22.32 0.22 -4.80 16 26 C -0.09 -4.00 8.54 22.38 0.19 -3.81 16 27 C 0.06 3.31 6.09 39.07 0.24 3.55 16 28 H 0.29 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.10 2.70 8.12 -2.38 -0.02 2.68 16 30 H 0.08 2.37 7.08 -2.39 -0.02 2.35 16 31 H 0.16 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.15 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.15 6.27 8.06 -2.91 -0.02 6.24 16 34 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.10 4.80 6.42 -2.91 -0.02 4.79 16 Total: -1.00 -65.79 333.23 7.80 -57.99 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.12 Total: 25.52 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.96 Total: -18.98 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.70 Total: -57.67 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.14 Total: -38.99 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 1.53 Total: -8.11 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -65.79 7.80 -57.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816415686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.992 kcal (2) G-P(sol) polarization free energy of solvation -65.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds