Wall clock time and date at job start Sat Apr 11 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 120.00049 * 2 1 4 4 H 1.48498 * 109.46992 * 240.00578 * 3 2 1 5 5 H 1.48498 * 109.46653 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00408 * 3 2 1 7 7 C 1.38655 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99932 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.35745 * 116.99917 * 185.05339 * 9 7 2 11 11 C 1.38963 * 120.03333 * 174.47987 * 10 9 7 12 12 C 1.38122 * 120.08044 * 179.97438 * 11 10 9 13 13 C 1.38198 * 120.14625 * 359.97438 * 12 11 10 14 14 C 1.38960 * 120.05758 * 0.04214 * 13 12 11 15 15 N 1.39678 * 120.03887 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.50700 * 109.47292 * 179.97438 * 16 15 14 18 18 C 1.38483 * 119.99301 * 89.99880 * 17 16 15 19 19 F 1.35097 * 119.96339 * 0.02562 * 18 17 16 20 20 C 1.38410 * 120.07362 * 179.97438 * 18 17 16 21 21 C 1.38233 * 120.06828 * 0.02562 * 20 18 17 22 22 C 1.38592 * 119.99543 * 0.02562 * 21 20 18 23 23 O 1.35999 * 120.04025 * 180.02562 * 22 21 20 24 24 C 1.38288 * 119.99860 * 269.72557 * 17 16 15 25 25 F 1.35099 * 120.03186 * 0.02562 * 24 17 16 26 26 C 1.38723 * 120.03038 * 354.45324 * 10 9 7 27 27 H 0.96994 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.95551 * 359.95846 * 11 10 9 29 29 H 1.07997 * 119.92955 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.97192 * 180.02562 * 13 12 11 31 31 H 0.97000 * 120.00288 * 179.97438 * 15 14 13 32 32 H 1.09007 * 109.47047 * 300.00148 * 16 15 14 33 33 H 1.09010 * 109.47252 * 59.99319 * 16 15 14 34 34 H 1.08002 * 119.96722 * 180.02562 * 20 18 17 35 35 H 1.07998 * 120.00213 * 180.02562 * 21 20 18 36 36 H 0.96701 * 114.00271 * 90.00022 * 23 22 21 37 37 H 1.07995 * 120.07598 * 359.75286 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6964 -1.2126 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 1.4354 -4.7349 0.2274 12 6 2.1827 -5.8916 0.3348 13 6 3.5632 -5.8298 0.3208 14 6 4.2038 -4.6027 0.1995 15 7 5.5992 -4.5407 0.1860 16 6 6.3881 -5.7697 0.3003 17 6 7.8558 -5.4302 0.2590 18 6 8.5369 -5.1588 1.4338 19 9 7.8850 -5.1990 2.6164 20 6 9.8850 -4.8473 1.3978 21 6 10.5543 -4.8060 0.1890 22 6 9.8752 -5.0762 -0.9885 23 8 10.5329 -5.0363 -2.1782 24 6 8.5236 -5.3954 -0.9515 25 9 7.8607 -5.6650 -2.0974 26 6 3.4556 -3.4386 0.0916 27 1 -0.4850 0.8400 0.0004 28 1 0.3567 -4.7865 0.2385 29 1 1.6870 -6.8464 0.4290 30 1 4.1447 -6.7360 0.4046 31 1 6.0458 -3.6839 0.1009 32 1 6.1556 -6.2643 1.2435 33 1 6.1460 -6.4354 -0.5283 34 1 10.4146 -4.6363 2.3151 35 1 11.6063 -4.5633 0.1623 36 1 10.9225 -5.8815 -2.4408 37 1 3.9510 -2.4842 -0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816564463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:39 Heat of formation + Delta-G solvation = -99.415907 kcal Electronic energy + Delta-G solvation = -25682.809065 eV Core-core repulsion = 21448.368592 eV Total energy + Delta-G solvation = -4234.440474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.096 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.33106 -49.31680 -39.97802 -39.01961 -37.57195 -36.76249 -34.78987 -32.24862 -31.82811 -29.82772 -29.13824 -28.15735 -25.85894 -25.19783 -23.26303 -22.56286 -21.62897 -20.51945 -18.93157 -18.46966 -17.99256 -17.84673 -17.37544 -16.57802 -16.15903 -15.81162 -15.64277 -15.30891 -15.01737 -14.78028 -14.66462 -14.23012 -14.17279 -13.89296 -13.81428 -13.42234 -13.34042 -12.91430 -12.74621 -12.32252 -12.13346 -12.08103 -11.59926 -11.37883 -11.11432 -10.91091 -10.78339 -10.60469 -10.37699 -9.50687 -9.42829 -9.32131 -8.99934 -8.72351 -7.32410 -6.77837 -6.37446 -3.96669 0.34998 0.41434 2.41189 2.59557 2.68240 3.17161 3.18849 3.20866 3.29947 3.58414 3.84868 3.94502 4.02986 4.05604 4.25252 4.49479 4.73577 4.97469 5.16819 5.19295 5.36816 5.39971 5.41679 5.49325 5.51676 5.64560 5.72065 6.00519 6.12521 6.30074 6.37899 6.62860 6.67185 7.03572 7.05000 7.18372 7.41358 7.51265 7.67659 7.99743 8.08498 8.18271 9.08633 9.81065 10.80893 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.003251 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.582820 B = 8609.871756 C = 9521.698605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.178 6.178 10 C 0.190 3.810 11 C -0.234 4.234 12 C -0.040 4.040 13 C -0.279 4.279 14 C 0.250 3.750 15 N -0.749 5.749 16 C 0.175 3.825 17 C -0.162 4.162 18 C 0.142 3.858 19 F -0.120 7.120 20 C -0.151 4.151 21 C -0.083 4.083 22 C 0.060 3.940 23 O -0.482 6.482 24 C 0.124 3.876 25 F -0.115 7.115 26 C -0.300 4.300 27 H 0.269 0.731 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.393 0.607 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.844 -12.657 0.967 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.135 3.865 11 C -0.255 4.255 12 C -0.059 4.059 13 C -0.302 4.302 14 C 0.149 3.851 15 N -0.382 5.382 16 C 0.051 3.949 17 C -0.165 4.165 18 C 0.122 3.878 19 F -0.098 7.098 20 C -0.170 4.170 21 C -0.101 4.101 22 C 0.014 3.986 23 O -0.292 6.292 24 C 0.104 3.896 25 F -0.093 7.093 26 C -0.323 4.323 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.250 0.750 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 22.218 -12.053 0.955 25.295 hybrid contribution 0.716 0.625 -0.084 0.954 sum 22.934 -11.428 0.871 25.639 Atomic orbital electron populations 1.70031 1.05901 1.27614 1.46482 1.25258 0.95804 0.98716 0.96701 0.85817 0.78715 0.80004 0.79095 1.19591 1.20291 1.19594 1.21255 0.91715 0.80916 1.52706 0.89262 1.83985 1.34189 1.11452 1.78444 1.19056 0.89422 0.87871 0.90134 1.20051 0.99386 0.90330 1.15720 1.20367 0.92919 0.96558 0.96011 1.20057 0.94519 0.94936 1.20669 1.17423 0.81658 0.93713 0.92274 1.44412 1.02900 1.07004 1.83863 1.19858 0.83373 0.88983 1.02699 1.19958 0.98191 1.07201 0.91120 1.17239 0.90245 0.99675 0.80665 1.91583 1.81212 1.93359 1.43659 1.21120 0.92607 1.03511 0.99800 1.21194 1.01081 0.97960 0.89896 1.18393 0.89108 1.04320 0.86810 1.84939 1.72221 1.37667 1.34415 1.17657 0.90059 1.00084 0.81843 1.91572 1.80373 1.90608 1.46774 1.20492 0.93744 0.97139 1.20950 0.92075 0.86851 0.87128 0.87908 0.77060 0.90726 0.90883 0.83246 0.83133 0.75035 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.99 13.67 55.48 0.76 -25.23 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.25 9.76 0.06 0.00 -5.25 16 10 C 0.19 4.81 6.64 -39.13 -0.26 4.55 16 11 C -0.23 -5.23 9.99 -39.36 -0.39 -5.62 16 12 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 13 C -0.28 -5.14 9.31 -39.33 -0.37 -5.50 16 14 C 0.25 4.88 6.65 -83.81 -0.56 4.33 16 15 N -0.75 -11.99 5.72 -59.82 -0.34 -12.34 16 16 C 0.18 2.26 4.68 -5.20 -0.02 2.24 16 17 C -0.16 -1.78 5.26 -104.51 -0.55 -2.33 16 18 C 0.14 1.41 7.24 -39.43 -0.29 1.12 16 19 F -0.12 -1.38 16.47 2.25 0.04 -1.34 16 20 C -0.15 -1.09 10.02 -39.52 -0.40 -1.48 16 21 C -0.08 -0.54 9.98 -39.45 -0.39 -0.93 16 22 C 0.06 0.51 6.71 -39.19 -0.26 0.25 16 23 O -0.48 -3.76 13.37 -19.74 -0.26 -4.03 16 24 C 0.12 1.33 7.25 -39.31 -0.28 1.05 16 25 F -0.12 -1.45 16.31 2.25 0.04 -1.41 16 26 C -0.30 -6.87 9.01 -39.19 -0.35 -7.22 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.10 1.62 6.72 -52.49 -0.35 1.27 16 31 H 0.40 6.13 8.47 -40.82 -0.35 5.78 16 32 H 0.07 0.94 7.44 -51.93 -0.39 0.56 16 33 H 0.07 0.94 7.43 -51.92 -0.39 0.55 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.39 1.07 9.06 45.56 0.41 1.48 16 37 H 0.12 2.86 5.64 -52.49 -0.30 2.57 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -34.07 334.45 -6.54 -40.61 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.45 Total: 8.51 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -4.33 Total: -20.65 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.42 Total: -37.57 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.26 Total: -9.28 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.07 Total: -2.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.07 -6.54 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816564463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.807 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds