Wall clock time and date at job start Sat Apr 11 2020 00:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99581 * 2 1 4 4 H 1.48493 * 109.47372 * 239.99697 * 3 2 1 5 5 H 1.48501 * 109.47223 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46923 * 119.99858 * 3 2 1 7 7 C 1.37872 * 120.00625 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00472 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99468 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46807 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46948 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47339 * 55.00259 * 11 10 9 13 13 N 1.46901 * 109.47335 * 295.00329 * 11 10 9 14 14 C 1.50700 * 109.47093 * 175.00017 * 11 10 9 15 15 N 1.31137 * 126.55316 * 255.25340 * 14 11 10 16 16 C 1.34487 * 105.61369 * 180.12166 * 15 14 11 17 17 C 1.50703 * 126.28752 * 179.90304 * 16 15 14 18 18 C 1.50699 * 109.47055 * 269.71769 * 17 16 15 19 19 C 1.38264 * 119.99683 * 89.99694 * 18 17 16 20 20 C 1.38220 * 120.02583 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.01498 * 0.02562 * 20 19 18 22 22 C 1.38335 * 119.98779 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.01468 * 179.72696 * 22 21 20 24 24 C 1.38189 * 119.99118 * 269.99284 * 18 17 16 25 25 N 1.29947 * 107.42972 * 359.64022 * 16 15 14 26 26 O 1.21301 * 110.24653 * 0.23034 * 25 16 15 27 27 H 0.96999 * 120.00363 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 60.00197 * 9 7 2 29 29 H 1.09000 * 109.47326 * 299.99918 * 9 7 2 30 30 H 1.09000 * 109.47162 * 60.00261 * 10 9 7 31 31 H 1.08995 * 109.47508 * 299.99837 * 10 9 7 32 32 H 1.00905 * 110.99415 * 299.99920 * 13 11 10 33 33 H 1.00895 * 110.99995 * 63.95188 * 13 11 10 34 34 H 1.08997 * 109.47633 * 149.71380 * 17 16 15 35 35 H 1.09003 * 109.47060 * 29.71289 * 17 16 15 36 36 H 1.08001 * 119.98449 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.99055 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00683 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.01014 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 1 0.7888 -5.0069 -0.8441 13 7 0.7282 -5.1187 1.2528 14 6 2.4552 -6.1297 -0.1256 15 7 2.6804 -6.8518 -1.1968 16 6 3.6186 -7.7467 -0.8395 17 6 4.2191 -8.8101 -1.7225 18 6 3.4056 -10.0737 -1.6112 19 6 2.3422 -10.2890 -2.4683 20 6 1.5960 -11.4481 -2.3670 21 6 1.9121 -12.3925 -1.4085 22 6 2.9759 -12.1777 -0.5507 23 17 3.3692 -13.3600 0.6581 24 6 3.7226 -11.0172 -0.6526 25 7 3.9163 -7.5224 0.4053 26 8 3.2590 -6.5975 0.8342 27 1 -0.4850 0.8400 0.0004 28 1 0.6249 -2.5562 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 2.8714 -3.6046 0.8891 31 1 2.8728 -3.6038 -0.8909 32 1 1.3477 -5.1030 2.0492 33 1 0.0233 -4.4007 1.3289 34 1 5.2434 -9.0084 -1.4072 35 1 4.2174 -8.4669 -2.7571 36 1 2.0946 -9.5512 -3.2171 37 1 0.7652 -11.6154 -3.0365 38 1 1.3292 -13.2983 -1.3298 39 1 4.5536 -10.8492 0.0166 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818381864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:43 Heat of formation + Delta-G solvation = 66.086059 kcal Electronic energy + Delta-G solvation = -23184.583121 eV Core-core repulsion = 19541.408782 eV Total energy + Delta-G solvation = -3643.174338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.44233 -39.78416 -36.88840 -36.86062 -35.96573 -33.56087 -32.97114 -31.44331 -31.08398 -30.08335 -27.94904 -26.66875 -24.32281 -23.56068 -23.00168 -22.18957 -21.09431 -20.03684 -17.96564 -17.50224 -17.13742 -16.63399 -16.01665 -15.83660 -15.76171 -14.93800 -14.55543 -14.28347 -14.20876 -13.83655 -13.61342 -13.52051 -13.45109 -12.81079 -12.45536 -12.22436 -12.07890 -11.82983 -11.73147 -11.67808 -11.46060 -11.18064 -11.09284 -10.97868 -10.88070 -10.67839 -10.08021 -9.95076 -9.60575 -9.32434 -9.30382 -9.03443 -8.55348 -8.46267 -6.12556 -4.15944 0.76642 0.87319 1.30059 1.79289 2.30858 2.97908 3.18915 3.26747 3.31761 3.34101 3.68615 4.04322 4.29792 4.36453 4.44776 4.68419 4.78346 4.89628 4.96093 5.05241 5.14011 5.23818 5.32046 5.37034 5.44923 5.53654 5.59099 5.81568 5.83762 5.96709 6.04093 6.13560 6.25284 6.39278 6.42165 6.75159 7.18531 7.42123 7.54339 7.60694 7.83857 8.25122 8.27770 8.89236 9.49252 10.98296 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.029205 B = 0.002128 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.523751 B =13153.007420 C =13211.887664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.142 4.142 11 C 0.180 3.820 12 H 0.123 0.877 13 N -0.840 5.840 14 C 0.218 3.782 15 N -0.484 5.484 16 C 0.169 3.831 17 C 0.014 3.986 18 C -0.073 4.073 19 C -0.096 4.096 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.036 4.036 23 Cl -0.071 7.071 24 C -0.097 4.097 25 N -0.387 5.387 26 O 0.078 5.922 27 H 0.263 0.737 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.344 0.656 33 H 0.366 0.634 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.863 -23.890 -3.243 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.183 4.183 11 C 0.066 3.934 12 H 0.140 0.860 13 N -0.373 5.373 14 C -0.003 4.003 15 N -0.218 5.218 16 C -0.104 4.104 17 C -0.024 4.024 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.062 4.062 23 Cl -0.042 7.042 24 C -0.116 4.116 25 N -0.096 5.096 26 O 0.021 5.979 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.050 -25.175 -3.395 25.900 hybrid contribution 0.785 1.924 0.421 2.120 sum 5.834 -23.252 -2.973 24.156 Atomic orbital electron populations 1.69929 1.06004 1.27008 1.50171 1.25000 0.94886 0.99324 0.95030 0.86629 0.79592 0.82943 0.78697 1.20194 1.21195 1.20196 1.21099 0.93019 0.90749 1.51490 0.92687 1.19099 0.93606 0.90846 0.97609 1.22538 1.00304 0.93320 1.02113 1.20237 0.90796 0.86145 0.96217 0.85960 1.58978 1.18565 1.56843 1.02964 1.29086 0.92994 0.96336 0.81894 1.71848 1.16211 1.07002 1.26749 1.25441 0.95766 0.98483 0.90732 1.18823 0.97799 0.86950 0.98846 1.19527 0.97023 0.94759 0.96136 1.21263 0.93951 0.97310 0.98847 1.21143 0.99772 0.93491 0.98097 1.21109 0.96222 1.00443 0.95028 1.20880 0.98573 0.92370 0.94382 1.98376 1.93674 1.57149 1.55051 1.20977 1.00126 0.92167 0.98334 1.74582 1.16624 1.04935 1.13443 1.85259 1.39229 1.34597 1.38805 0.92747 0.95990 0.96191 0.92211 0.91973 0.84337 0.81635 0.87974 0.87250 0.84719 0.84725 0.84879 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -13.98 9.11 -34.44 -0.31 -14.30 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.64 4.78 -26.73 -0.13 -2.76 16 11 C 0.18 2.84 3.35 -68.86 -0.23 2.61 16 12 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 13 N -0.84 -12.22 9.17 -5.65 -0.05 -12.27 16 14 C 0.22 3.48 7.32 -13.05 -0.10 3.38 16 15 N -0.48 -7.64 11.55 -9.87 -0.11 -7.75 16 16 C 0.17 2.40 7.45 -156.38 -1.17 1.24 16 17 C 0.01 0.15 5.97 -29.03 -0.17 -0.03 16 18 C -0.07 -0.74 5.11 -104.63 -0.54 -1.27 16 19 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 20 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 21 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 22 C -0.04 -0.35 6.32 -39.49 -0.25 -0.60 16 23 Cl -0.07 -0.67 28.96 -51.86 -1.50 -2.18 16 24 C -0.10 -0.99 9.49 -39.55 -0.38 -1.37 16 25 N -0.39 -6.04 12.16 30.90 0.38 -5.67 16 26 O 0.08 1.26 11.29 18.10 0.20 1.47 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.34 4.68 8.98 -39.29 -0.35 4.33 16 33 H 0.37 5.37 7.55 -39.29 -0.30 5.08 16 34 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.11 0.93 8.09 -51.93 -0.42 0.51 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -29.80 356.36 -9.44 -39.24 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.77 Total: 5.55 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.67 Total: -15.00 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.95 Total: -50.33 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.80 -9.44 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818381864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.324 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds