Wall clock time and date at job start Sat Apr 11 2020 00:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48507 * 109.47145 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46899 * 119.99811 * 3 2 1 6 6 H 1.48497 * 109.47718 * 240.00478 * 3 2 1 7 7 C 1.38692 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99938 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.35519 * 117.00309 * 174.93527 * 9 7 2 11 11 C 1.38842 * 120.15993 * 5.59633 * 10 9 7 12 12 C 1.38025 * 120.07014 * 179.72130 * 11 10 9 13 13 C 1.38577 * 120.40058 * 0.55398 * 12 11 10 14 14 C 1.37824 * 120.32451 * 359.72365 * 13 12 11 15 15 C 1.39667 * 119.92004 * 359.97438 * 14 13 12 16 16 C 1.47532 * 120.19860 * 179.97438 * 15 14 13 17 17 O 1.21595 * 120.00253 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00108 * 0.02562 * 16 15 14 19 19 C 1.46504 * 120.00257 * 180.02562 * 18 16 15 20 20 C 1.50691 * 110.45545 * 61.14852 * 19 18 16 21 21 O 1.20834 * 119.99805 * 145.70158 * 20 19 18 22 22 O 1.34230 * 120.00326 * 325.70190 * 20 19 18 23 23 C 1.54509 * 110.50796 * 183.90702 * 19 18 16 24 24 C 1.54475 * 104.06117 * 118.64577 * 23 19 18 25 25 O 1.44418 * 104.80491 * 336.01461 * 24 23 19 26 26 C 1.44423 * 105.27634 * 40.51295 * 25 24 23 27 27 H 0.97009 * 119.99666 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.96268 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.79648 * 180.29942 * 12 11 10 30 30 H 1.08001 * 119.83390 * 179.70386 * 13 12 11 31 31 H 1.07998 * 120.03898 * 180.02562 * 14 13 12 32 32 H 0.96999 * 119.99883 * 359.97438 * 18 16 15 33 33 H 0.96698 * 116.99713 * 179.97438 * 22 20 19 34 34 H 1.09000 * 110.50729 * 237.28643 * 23 19 18 35 35 H 1.09001 * 110.51446 * 359.97438 * 23 19 18 36 36 H 1.09007 * 110.36769 * 217.18148 * 24 23 19 37 37 H 1.09002 * 110.46819 * 94.90177 * 24 23 19 38 38 H 1.08994 * 110.37483 * 200.65703 * 26 25 24 39 39 H 1.09005 * 110.36667 * 78.31642 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6963 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0086 -1.2011 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0016 10 6 2.0685 -3.5028 -0.1087 11 6 3.4555 -3.4401 -0.0942 12 6 4.2012 -4.5970 -0.1976 13 6 3.5744 -5.8260 -0.3278 14 6 2.1987 -5.9068 -0.3498 15 6 1.4309 -4.7453 -0.2398 16 6 -0.0421 -4.8245 -0.2632 17 8 -0.7072 -3.8110 -0.1677 18 7 -0.6508 -6.0203 -0.3904 19 6 -2.1135 -6.0990 -0.4142 20 6 -2.6635 -5.3263 -1.5852 21 8 -3.6560 -5.7159 -2.1536 22 8 -2.0509 -4.2051 -1.9968 23 6 -2.5755 -7.5723 -0.4687 24 6 -3.3922 -7.7579 0.8293 25 8 -2.8917 -6.7444 1.7283 26 6 -2.7055 -5.5687 0.9105 27 1 -0.4850 0.8401 0.0004 28 1 3.9513 -2.4855 0.0021 29 1 5.2797 -4.5435 -0.1810 30 1 4.1669 -6.7250 -0.4129 31 1 1.7151 -6.8671 -0.4511 32 1 -0.1203 -6.8288 -0.4670 33 1 -2.4405 -3.7440 -2.7523 34 1 -3.2037 -7.7434 -1.3429 35 1 -1.7157 -8.2422 -0.4784 36 1 -3.2231 -8.7512 1.2453 37 1 -4.4540 -7.6037 0.6369 38 1 -2.0089 -4.8802 1.3887 39 1 -3.6616 -5.0776 0.7290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833068271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:59 Heat of formation + Delta-G solvation = -175.228368 kcal Electronic energy + Delta-G solvation = -27967.766638 eV Core-core repulsion = 23841.126205 eV Total energy + Delta-G solvation = -4126.640433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34305 -41.00800 -40.09600 -39.29342 -37.96943 -37.18331 -35.65835 -34.27774 -32.78370 -31.44574 -30.52722 -29.91350 -27.32395 -25.58744 -24.82448 -23.98517 -23.12011 -21.70525 -21.03001 -19.87438 -19.57633 -19.06305 -18.41321 -17.88574 -17.56805 -17.01028 -16.44429 -16.25983 -16.17084 -15.95517 -15.84712 -15.70583 -15.30370 -15.06858 -14.74546 -14.28687 -14.08558 -13.95521 -13.67888 -13.51561 -13.06178 -12.97644 -12.81171 -12.65046 -12.60391 -12.47962 -12.32519 -12.18760 -12.13195 -11.92480 -11.36329 -11.01237 -10.78508 -10.48344 -10.18252 -9.77638 -8.99072 -8.40583 -6.10336 0.17419 0.77186 0.88202 1.34281 1.46145 1.50709 1.84325 2.05846 2.17970 2.22836 2.85889 2.92546 3.05547 3.26661 3.49350 3.52350 3.93391 3.99568 4.02604 4.11824 4.12513 4.26019 4.35108 4.56212 4.58356 4.68383 4.73321 4.78191 4.83197 5.01468 5.11227 5.17303 5.30469 5.44120 5.51677 5.58508 5.64583 5.73897 5.99263 6.20478 6.61910 6.85317 6.99142 7.51759 7.84266 8.78654 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.004702 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.520690 B = 5953.109140 C = 7235.817645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.018 4.018 3 Si 1.016 2.984 4 H -0.275 1.275 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.426 4.426 8 H 0.103 0.897 9 O -0.182 6.182 10 C 0.151 3.849 11 C -0.259 4.259 12 C -0.043 4.043 13 C -0.202 4.202 14 C -0.032 4.032 15 C -0.240 4.240 16 C 0.550 3.450 17 O -0.517 6.517 18 N -0.706 5.706 19 C 0.158 3.842 20 C 0.483 3.517 21 O -0.535 6.535 22 O -0.487 6.487 23 C -0.139 4.139 24 C 0.040 3.960 25 O -0.376 6.376 26 C 0.057 3.943 27 H 0.269 0.731 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.418 0.582 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -17.741 -1.918 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.200 1.200 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.502 4.502 8 H 0.120 0.880 9 O -0.085 6.085 10 C 0.096 3.904 11 C -0.279 4.279 12 C -0.061 4.061 13 C -0.220 4.220 14 C -0.050 4.050 15 C -0.244 4.244 16 C 0.339 3.661 17 O -0.392 6.392 18 N -0.366 5.366 19 C 0.068 3.932 20 C 0.325 3.675 21 O -0.426 6.426 22 O -0.297 6.297 23 C -0.176 4.176 24 C -0.036 4.036 25 O -0.295 6.295 26 C -0.022 4.022 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.258 0.742 33 H 0.272 0.728 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.313 -17.104 -1.419 17.166 hybrid contribution -0.016 1.515 -0.789 1.709 sum 0.297 -15.589 -2.207 15.747 Atomic orbital electron populations 1.70302 1.08076 1.28382 1.46722 1.26610 0.96693 1.02743 0.95685 0.84703 0.77417 0.74402 0.79979 1.19953 1.18046 1.18024 1.21914 0.92530 0.81911 1.53811 0.87955 1.84167 1.34828 1.11925 1.77551 1.20036 0.91496 0.87638 0.91231 1.21296 0.92552 1.00801 1.13209 1.21410 1.00610 0.91409 0.92635 1.21154 0.94083 0.98330 1.08460 1.21320 0.94420 0.95750 0.93530 1.19229 0.92326 0.92740 1.20153 1.18420 0.88090 0.83197 0.76346 1.90963 1.66218 1.35402 1.46605 1.45697 1.03867 1.09580 1.77462 1.21457 0.82937 0.97592 0.91176 1.23791 0.80993 0.79026 0.83689 1.90656 1.26378 1.69242 1.56312 1.85029 1.56613 1.37215 1.50852 1.23358 1.03378 0.89173 1.01710 1.23781 0.97958 0.94024 0.87853 1.89194 1.86177 1.21586 1.32509 1.23476 1.00108 0.89387 0.89187 0.92210 0.86109 0.83196 0.82052 0.82183 0.74207 0.72839 0.87138 0.85354 0.84652 0.90933 0.89688 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.16 13.67 21.62 0.30 -56.86 16 2 C -0.02 -1.02 5.49 84.85 0.47 -0.55 16 3 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.43 -25.10 9.49 67.93 0.64 -24.46 16 8 H 0.10 5.45 5.21 -2.91 -0.02 5.44 16 9 O -0.18 -11.15 7.84 0.83 0.01 -11.15 16 10 C 0.15 7.50 6.66 22.91 0.15 7.65 16 11 C -0.26 -10.79 9.16 22.36 0.20 -10.59 16 12 C -0.04 -1.29 10.03 22.30 0.22 -1.06 16 13 C -0.20 -5.15 10.02 22.25 0.22 -4.93 16 14 C -0.03 -0.90 9.53 22.52 0.21 -0.69 16 15 C -0.24 -9.84 5.89 -19.99 -0.12 -9.96 16 16 C 0.55 22.97 6.50 86.69 0.56 23.53 16 17 O -0.52 -27.37 11.13 26.32 0.29 -27.08 16 18 N -0.71 -20.69 5.10 -424.83 -2.17 -22.86 16 19 C 0.16 4.51 1.00 3.87 0.00 4.52 16 20 C 0.48 16.11 7.06 71.23 0.50 16.61 16 21 O -0.54 -18.01 16.35 21.94 0.36 -17.65 16 22 O -0.49 -18.52 9.86 -43.81 -0.43 -18.95 16 23 C -0.14 -2.48 6.40 31.61 0.20 -2.28 16 24 C 0.04 0.70 7.63 72.48 0.55 1.25 16 25 O -0.38 -10.37 11.65 -148.98 -1.74 -12.10 16 26 C 0.06 1.85 6.44 72.48 0.47 2.32 16 27 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 28 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 29 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.16 2.88 6.40 -2.91 -0.02 2.87 16 32 H 0.42 8.47 6.17 -92.71 -0.57 7.90 16 33 H 0.41 12.31 9.10 -74.06 -0.67 11.63 16 34 H 0.11 1.97 6.79 -2.39 -0.02 1.95 16 35 H 0.13 1.40 7.53 -2.39 -0.02 1.38 16 36 H 0.14 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 3.44 6.48 -2.39 -0.02 3.42 16 39 H 0.07 2.15 7.86 -2.38 -0.02 2.13 16 Total: -1.00 -86.94 329.66 2.85 -84.09 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.10 Total: 35.62 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 4.30 Total: 1.37 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.87 Total: -79.72 kcal Atomic # 8 Polarization: -85.42 SS G_CDS: -1.51 Total: -86.93 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -86.94 2.85 -84.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833068271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.139 kcal (2) G-P(sol) polarization free energy of solvation -86.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds