Wall clock time and date at job start Sat Apr 11 2020 00:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86805 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46825 * 239.99487 * 3 2 1 5 5 H 1.48496 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46966 * 119.99569 * 3 2 1 7 7 C 1.38695 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99482 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00030 * 359.72794 * 7 2 1 10 10 C 1.35522 * 117.00358 * 174.68943 * 9 7 2 11 11 C 1.38835 * 120.15348 * 6.95582 * 10 9 7 12 12 C 1.38035 * 120.06901 * 180.02562 * 11 10 9 13 13 C 1.38570 * 120.39868 * 0.02562 * 12 11 10 14 14 C 1.37826 * 120.32724 * 359.97438 * 13 12 11 15 15 C 1.39663 * 119.91703 * 359.72611 * 14 13 12 16 16 C 1.47534 * 120.19804 * 180.27139 * 15 14 13 17 17 O 1.21589 * 120.00323 * 138.27070 * 16 15 14 18 18 N 1.34780 * 120.00136 * 318.26780 * 16 15 14 19 19 C 1.47144 * 120.98304 * 312.33081 * 18 16 15 20 20 C 1.53294 * 108.38158 * 230.50742 * 19 18 16 21 21 O 1.42963 * 109.22484 * 307.69422 * 20 19 18 22 22 C 1.42957 * 114.16403 * 62.58071 * 21 20 19 23 23 C 1.47156 * 120.97751 * 132.03668 * 18 16 15 24 24 H 1.08998 * 109.68079 * 249.20992 * 23 18 16 25 25 C 1.50691 * 109.68477 * 9.77044 * 23 18 16 26 26 O 1.20826 * 120.00426 * 235.21698 * 25 23 18 27 27 O 1.34238 * 119.99908 * 55.22145 * 25 23 18 28 28 H 0.96996 * 119.99988 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.96915 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.79789 * 180.02562 * 12 11 10 31 31 H 1.08006 * 119.83520 * 179.97438 * 13 12 11 32 32 H 1.08000 * 120.04331 * 180.02562 * 14 13 12 33 33 H 1.09005 * 109.68361 * 350.22845 * 19 18 16 34 34 H 1.09000 * 109.68804 * 110.74895 * 19 18 16 35 35 H 1.09001 * 109.51377 * 67.62189 * 20 19 18 36 36 H 1.09002 * 109.51568 * 187.71817 * 20 19 18 37 37 H 1.09003 * 109.51619 * 57.34761 * 22 21 20 38 38 H 1.09001 * 109.51274 * 177.44793 * 22 21 20 39 39 H 0.96697 * 116.99741 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0088 -1.2011 0.0005 8 1 3.0888 -1.2010 0.0010 9 8 1.3348 -2.3686 0.0066 10 6 2.0679 -3.5029 -0.1050 11 6 3.4546 -3.4430 -0.0737 12 6 4.1996 -4.5994 -0.1880 13 6 3.5721 -5.8261 -0.3350 14 6 2.1965 -5.9046 -0.3682 15 6 1.4294 -4.7437 -0.2474 16 6 -0.0436 -4.8212 -0.2761 17 8 -0.7028 -4.1521 0.4960 18 7 -0.6587 -5.6338 -1.1582 19 6 -0.2732 -5.6404 -2.5782 20 6 -1.5425 -5.4895 -3.4244 21 8 -2.4970 -6.4744 -3.0210 22 6 -2.9331 -6.3461 -1.6656 23 6 -1.7312 -6.5450 -0.7282 24 1 -1.3826 -7.5760 -0.7875 25 6 -2.1319 -6.2245 0.6886 26 8 -2.1097 -7.0886 1.5329 27 8 -2.5137 -4.9791 1.0128 28 1 -0.4850 0.8400 -0.0004 29 1 3.9510 -2.4905 0.0394 30 1 5.2781 -4.5477 -0.1627 31 1 4.1639 -6.7251 -0.4241 32 1 1.7122 -6.8631 -0.4826 33 1 0.4029 -4.8093 -2.7790 34 1 0.2203 -6.5817 -2.8203 35 1 -1.9619 -4.4942 -3.2773 36 1 -1.2970 -5.6290 -4.4772 37 1 -3.3576 -5.3540 -1.5120 38 1 -3.6888 -7.1024 -1.4532 39 1 -2.7620 -4.8219 1.9340 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833068374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:04 Heat of formation + Delta-G solvation = -135.148179 kcal Electronic energy + Delta-G solvation = -28256.817514 eV Core-core repulsion = 24131.915088 eV Total energy + Delta-G solvation = -4124.902426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83543 -39.44771 -38.83202 -37.68111 -36.41943 -35.77518 -34.49471 -32.43401 -31.96136 -30.54204 -29.02734 -27.79049 -25.47367 -25.20612 -23.39355 -22.03029 -21.74873 -21.30495 -19.43928 -18.11115 -17.79299 -17.47445 -16.83242 -16.66694 -15.95107 -15.63435 -15.56639 -14.99204 -14.72896 -14.69331 -14.31993 -14.16060 -14.03526 -13.80821 -13.65361 -13.15829 -12.75234 -12.61927 -12.40710 -12.14079 -11.80027 -11.50060 -11.40486 -11.36799 -11.05446 -10.99318 -10.95035 -10.82601 -10.53739 -10.42851 -10.08762 -9.64868 -9.09232 -8.95319 -8.34024 -8.19043 -7.40797 -6.54438 -4.14726 1.64588 2.10457 2.24681 3.03209 3.06589 3.07967 3.10832 3.13582 3.29527 3.76679 3.86437 4.43265 4.51264 4.80725 4.97305 4.99299 5.07115 5.09824 5.22733 5.34015 5.39696 5.48650 5.50635 5.65447 5.72431 5.73161 5.90328 5.96649 6.09361 6.51665 6.58480 6.68891 6.75615 6.91191 6.93667 7.00252 7.17159 7.21659 7.61973 7.66495 7.86286 8.11453 8.60205 8.87262 9.54983 10.60272 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004959 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.884918 B = 5645.329272 C = 6382.605762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.401 4.401 8 H 0.094 0.906 9 O -0.144 6.144 10 C 0.188 3.812 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.226 4.226 14 C -0.029 4.029 15 C -0.231 4.231 16 C 0.578 3.422 17 O -0.445 6.445 18 N -0.659 5.659 19 C 0.101 3.899 20 C 0.043 3.957 21 O -0.374 6.374 22 C 0.055 3.945 23 C 0.136 3.864 24 H 0.115 0.885 25 C 0.481 3.519 26 O -0.523 6.523 27 O -0.460 6.460 28 H 0.273 0.727 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -10.315 -5.599 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.111 0.889 9 O -0.043 6.043 10 C 0.129 3.871 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.245 4.245 14 C -0.048 4.048 15 C -0.236 4.236 16 C 0.369 3.631 17 O -0.314 6.314 18 N -0.403 5.403 19 C -0.022 4.022 20 C -0.034 4.034 21 O -0.291 6.291 22 C -0.023 4.023 23 C 0.030 3.970 24 H 0.132 0.868 25 C 0.322 3.678 26 O -0.412 6.412 27 O -0.268 6.268 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.625 -10.053 -5.384 11.519 hybrid contribution 0.684 1.021 0.766 1.448 sum -0.941 -9.032 -4.618 10.187 Atomic orbital electron populations 1.70070 1.05983 1.28024 1.43257 1.25362 0.95833 0.98947 0.96088 0.85779 0.78788 0.79568 0.79313 1.19344 1.20137 1.19338 1.21383 0.91867 0.80759 1.53644 0.88873 1.84027 1.34204 1.11282 1.74814 1.19272 0.90010 0.87180 0.90590 1.21146 0.93345 0.99373 1.11743 1.20918 0.98713 0.92276 0.95026 1.20503 0.94024 0.97202 1.12805 1.20705 0.93500 0.95748 0.94810 1.18944 0.92229 0.92489 1.19924 1.18355 0.87413 0.77614 0.79763 1.90876 1.66017 1.34478 1.40002 1.47510 1.38885 1.45002 1.08909 1.22110 0.97187 1.03458 0.79424 1.23102 0.88803 0.92540 0.98979 1.87947 1.60695 1.53885 1.26617 1.23018 0.93942 1.03586 0.81739 1.21754 0.90874 0.95587 0.88739 0.86788 1.22971 0.73579 0.80616 0.90616 1.90712 1.50730 1.48945 1.50800 1.84956 1.76274 1.29619 1.35987 0.91732 0.85067 0.87109 0.87166 0.86857 0.88533 0.91136 0.91934 0.87433 0.90866 0.87622 0.73982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.34 13.67 55.48 0.76 -23.59 16 2 C 0.04 1.20 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.40 -10.90 9.49 30.90 0.29 -10.60 16 8 H 0.09 2.30 5.22 -52.48 -0.27 2.03 16 9 O -0.14 -4.03 8.60 -13.83 -0.12 -4.15 16 10 C 0.19 4.45 6.62 -38.60 -0.26 4.20 16 11 C -0.24 -4.91 9.16 -39.43 -0.36 -5.27 16 12 C -0.05 -0.87 10.03 -39.53 -0.40 -1.27 16 13 C -0.23 -3.67 10.02 -39.61 -0.40 -4.07 16 14 C -0.03 -0.50 9.46 -39.20 -0.37 -0.88 16 15 C -0.23 -4.84 5.11 -104.81 -0.54 -5.38 16 16 C 0.58 12.14 5.76 -12.47 -0.07 12.07 16 17 O -0.45 -10.91 12.41 -25.17 -0.31 -11.23 16 18 N -0.66 -10.83 2.83 -167.03 -0.47 -11.30 16 19 C 0.10 1.34 6.23 -3.54 -0.02 1.32 16 20 C 0.04 0.51 6.98 37.31 0.26 0.77 16 21 O -0.37 -4.68 10.74 -35.23 -0.38 -5.06 16 22 C 0.06 0.69 6.29 37.53 0.24 0.92 16 23 C 0.14 1.96 3.55 -68.36 -0.24 1.72 16 24 H 0.11 1.45 8.13 -51.93 -0.42 1.03 16 25 C 0.48 8.04 6.06 36.00 0.22 8.26 16 26 O -0.52 -9.64 17.85 -18.75 -0.33 -9.97 16 27 O -0.46 -7.94 9.67 -47.71 -0.46 -8.41 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.13 2.68 5.66 -52.49 -0.30 2.39 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.10 1.40 7.69 -51.93 -0.40 1.00 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 38 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.40 5.52 9.10 45.56 0.41 5.93 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -34.59 335.79 -6.51 -41.11 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.49 Total: 9.77 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.74 Total: 2.90 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.29 Total: -34.89 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.61 Total: -38.82 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.59 -6.51 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833068374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.042 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds