Wall clock time and date at job start Sat Apr 11 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 O 1.45209 * 109.46951 * 179.97438 * 12 10 9 14 14 C 1.34223 * 116.99725 * 179.97438 * 13 12 10 15 15 O 1.20820 * 120.00620 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99666 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46894 * 179.97438 * 16 14 13 18 18 H 1.08994 * 109.70873 * 305.58276 * 17 16 14 19 19 C 1.53474 * 109.70532 * 184.99684 * 17 16 14 20 20 O 1.43176 * 108.23876 * 180.57746 * 19 17 16 21 21 C 1.36107 * 116.70531 * 46.23442 * 20 19 17 22 22 C 1.38699 * 119.40051 * 162.74054 * 21 20 19 23 23 C 1.38201 * 120.06557 * 179.84943 * 22 21 20 24 24 C 1.38248 * 120.11619 * 359.97438 * 23 22 21 25 25 C 1.38200 * 120.10966 * 0.11097 * 24 23 22 26 26 C 1.38699 * 120.06916 * 359.94521 * 25 24 23 27 27 O 1.36105 * 119.39977 * 179.71724 * 26 25 24 28 28 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 31 31 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 32 32 H 1.08997 * 109.46698 * 299.99691 * 16 14 13 33 33 H 1.08997 * 109.47228 * 59.99862 * 16 14 13 34 34 H 1.08997 * 109.71341 * 300.26784 * 19 17 16 35 35 H 1.09000 * 109.71007 * 60.85206 * 19 17 16 36 36 H 1.07995 * 119.96845 * 359.87145 * 22 21 20 37 37 H 1.08004 * 119.94370 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.94663 * 180.02562 * 24 23 22 39 39 H 1.08004 * 119.96774 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 8 2.1873 -5.9666 0.0183 14 6 1.6741 -7.2069 0.0248 15 8 0.4764 -7.3652 0.0264 16 6 2.5922 -8.4021 0.0300 17 6 1.7588 -9.6852 0.0376 18 1 1.0587 -9.6639 0.8727 19 6 2.6842 -10.9025 0.1688 20 8 1.8750 -12.0836 0.1589 21 6 0.9089 -12.1553 -0.7972 22 6 0.3401 -13.3836 -1.0996 23 6 -0.6441 -13.4717 -2.0659 24 6 -1.0647 -12.3363 -2.7332 25 6 -0.5007 -11.1097 -2.4379 26 6 0.4882 -11.0144 -1.4701 27 8 1.0383 -9.8004 -1.1942 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6167 -4.9162 0.9030 31 1 0.6174 -4.9252 -0.8769 32 1 3.2203 -8.3816 -0.8605 33 1 3.2216 -8.3728 0.9194 34 1 3.3806 -10.9270 -0.6694 35 1 3.2384 -10.8437 1.1055 36 1 0.6663 -14.2719 -0.5793 37 1 -1.0860 -14.4291 -2.2995 38 1 -1.8342 -12.4083 -3.4874 39 1 -0.8307 -10.2242 -2.9609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837990934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:12 Heat of formation + Delta-G solvation = -187.877723 kcal Electronic energy + Delta-G solvation = -25757.130899 eV Core-core repulsion = 21629.941949 eV Total energy + Delta-G solvation = -4127.188950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40773 -41.57917 -40.07714 -38.76719 -38.30438 -37.49755 -36.05430 -34.21595 -33.43640 -31.63446 -30.70816 -29.90662 -28.33411 -26.58461 -25.06714 -23.74508 -22.37634 -21.49799 -21.44760 -20.09715 -19.92387 -18.93601 -18.49122 -18.12558 -17.75498 -17.63607 -17.16952 -16.50621 -16.25554 -15.99617 -15.96177 -15.72306 -15.51395 -15.42955 -14.87480 -14.80317 -14.59033 -14.20320 -13.92005 -13.58949 -13.51833 -13.16241 -12.94954 -12.83554 -12.75882 -12.48456 -12.16418 -12.11558 -12.00299 -11.88557 -11.75502 -11.60334 -11.40980 -10.54014 -10.14129 -9.64193 -9.08052 -8.54357 -6.05241 0.30362 0.32752 1.08549 1.30209 1.33439 1.43652 1.58062 1.84244 1.98382 2.20011 2.28402 2.74765 2.93801 3.11045 3.21307 3.37604 3.56522 3.72053 3.82245 4.05720 4.11329 4.13410 4.19066 4.22319 4.24840 4.36768 4.40087 4.47147 4.58516 4.64005 4.89438 5.19027 5.22545 5.31012 5.35776 5.51909 5.72259 5.86995 5.91693 6.40464 6.42999 6.61121 7.00677 7.37293 7.90295 8.62917 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.002082 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.225246 B =13443.883891 C =14071.619990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.072 3.928 13 O -0.342 6.342 14 C 0.457 3.543 15 O -0.530 6.530 16 C -0.096 4.096 17 C 0.060 3.940 18 H 0.081 0.919 19 C 0.030 3.970 20 O -0.316 6.316 21 C 0.028 3.972 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.135 4.135 26 C 0.031 3.969 27 O -0.320 6.320 28 H 0.281 0.719 29 H 0.399 0.601 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 -26.930 -1.686 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.005 4.005 13 O -0.258 6.258 14 C 0.301 3.699 15 O -0.419 6.419 16 C -0.133 4.133 17 C 0.003 3.997 18 H 0.099 0.901 19 C -0.045 4.045 20 O -0.231 6.231 21 C -0.017 4.017 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.154 4.154 26 C -0.014 4.014 27 O -0.236 6.236 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.190 0.810 34 H 0.111 0.889 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.175 0.825 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.275 -26.745 -1.649 26.798 hybrid contribution -0.485 1.394 0.041 1.476 sum -0.210 -25.352 -1.608 25.404 Atomic orbital electron populations 1.69683 1.07000 1.29704 1.49200 1.26167 0.96613 1.02705 0.95649 0.84771 0.78085 0.76441 0.78429 1.19450 1.19479 1.19436 1.19773 0.92970 0.83320 1.50577 0.89652 1.41769 1.09566 1.04264 1.63984 1.20089 0.88081 0.85352 0.84132 1.90521 1.15359 1.87697 1.56784 1.22476 0.90223 0.82695 1.05100 1.86540 1.40613 1.15010 1.83604 1.24308 0.89124 0.84768 0.71728 1.90687 1.18172 1.86730 1.46281 1.21530 0.96660 0.84582 1.10506 1.23029 0.94498 0.95766 0.86381 0.90078 1.23903 0.91472 0.81137 1.08000 1.86281 1.44917 1.41633 1.50249 1.19204 0.94039 0.94090 0.94361 1.20805 0.98653 0.94912 0.99586 1.21333 0.96529 1.00114 0.95217 1.21289 1.00315 0.90870 1.00689 1.20750 0.95593 1.00147 0.98881 1.19277 0.97869 0.83884 1.00382 1.86354 1.68081 1.29465 1.39653 0.90952 0.76616 0.87651 0.88101 0.84321 0.80969 0.88885 0.81985 0.83130 0.81838 0.82524 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 42.01 29.55 68.60 2.03 44.04 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -28.82 5.29 -306.98 -1.62 -30.45 16 10 C 0.44 21.41 7.86 87.66 0.69 22.09 16 11 O -0.62 -34.94 16.08 15.73 0.25 -34.69 16 12 C 0.07 2.75 5.94 71.24 0.42 3.18 16 13 O -0.34 -12.26 9.76 -45.00 -0.44 -12.70 16 14 C 0.46 13.48 7.85 71.24 0.56 14.04 16 15 O -0.53 -18.55 15.22 26.70 0.41 -18.14 16 16 C -0.10 -1.70 5.54 29.85 0.17 -1.53 16 17 C 0.06 1.19 2.55 30.75 0.08 1.26 16 18 H 0.08 1.81 7.94 -2.39 -0.02 1.79 16 19 C 0.03 0.41 6.56 72.14 0.47 0.88 16 20 O -0.32 -6.29 10.42 -82.54 -0.86 -7.15 16 21 C 0.03 0.61 6.49 22.56 0.15 0.76 16 22 C -0.12 -2.06 9.96 22.37 0.22 -1.84 16 23 C -0.11 -1.56 10.04 22.26 0.22 -1.34 16 24 C -0.11 -1.80 10.04 22.26 0.22 -1.57 16 25 C -0.14 -2.98 9.96 22.37 0.22 -2.76 16 26 C 0.03 0.77 6.49 22.56 0.15 0.91 16 27 O -0.32 -8.59 9.40 -72.08 -0.68 -9.27 16 28 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 30 H 0.11 3.60 8.13 -2.39 -0.02 3.58 16 31 H 0.10 3.55 8.13 -2.39 -0.02 3.53 16 32 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -77.76 346.93 4.59 -73.17 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.37 Total: 27.89 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 4.86 Total: 15.83 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.34 Total: -78.98 kcal Atomic # 8 Polarization: -80.62 SS G_CDS: -1.32 Total: -81.94 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -77.76 4.59 -73.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837990934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.709 kcal (2) G-P(sol) polarization free energy of solvation -77.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds