Wall clock time and date at job start Sat Apr 11 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50706 * 120.00041 * 2 1 4 4 C 1.52990 * 109.46926 * 294.99842 * 3 2 1 5 5 C 1.53002 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47346 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00015 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99984 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99857 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46935 * 90.00179 * 10 8 6 12 12 H 1.48494 * 109.46803 * 209.99994 * 10 8 6 13 13 H 1.48496 * 109.47020 * 330.00226 * 10 8 6 14 14 N 1.28021 * 119.99898 * 179.97438 * 2 1 3 15 15 N 1.40093 * 120.00195 * 0.02562 * 14 2 1 16 16 C 1.38598 * 120.00037 * 179.97438 * 15 14 2 17 17 N 1.29733 * 124.94684 * 179.97438 * 16 15 14 18 18 C 1.32027 * 116.87640 * 179.97438 * 17 16 15 19 19 C 1.50706 * 122.71041 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.46715 * 5.02458 * 19 18 17 21 21 F 1.39897 * 109.47068 * 125.02369 * 19 18 17 22 22 F 1.39895 * 109.47042 * 245.02678 * 19 18 17 23 23 C 1.33401 * 114.58299 * 0.26957 * 18 17 16 24 24 S 1.70966 * 124.95359 * 359.97438 * 16 15 14 25 25 H 1.08991 * 109.47109 * 270.00263 * 1 2 3 26 26 H 1.09001 * 109.46616 * 30.00549 * 1 2 3 27 27 H 1.09002 * 109.46813 * 149.99771 * 1 2 3 28 28 H 1.08999 * 109.46862 * 54.99826 * 3 2 1 29 29 H 1.08997 * 109.46746 * 174.99623 * 3 2 1 30 30 H 1.08999 * 109.47336 * 299.99693 * 4 3 2 31 31 H 1.08997 * 109.47587 * 60.00296 * 4 3 2 32 32 H 1.09003 * 109.47153 * 299.99847 * 5 4 3 33 33 H 1.08999 * 109.47361 * 59.99659 * 5 4 3 34 34 H 0.97004 * 119.99766 * 179.97438 * 9 8 6 35 35 H 0.96999 * 119.99987 * 359.97438 * 15 14 2 36 36 H 1.07997 * 125.95495 * 179.72662 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 1.9876 2.0515 -1.3073 5 6 2.7531 3.3763 -1.3076 6 6 2.4849 4.1113 -2.5956 7 1 1.8332 3.6772 -3.3393 8 6 3.0706 5.3384 -2.8239 9 7 3.8629 5.8677 -1.9175 10 14 2.7385 6.2491 -4.4208 11 1 1.5511 7.1251 -4.2533 12 1 3.9194 7.0779 -4.7726 13 1 2.4811 5.2683 -5.5056 14 7 2.1471 -1.1087 0.0005 15 7 1.4467 -2.3220 0.0005 16 6 2.1397 -3.5222 0.0005 17 7 1.5903 -4.6975 0.0010 18 6 2.4044 -5.7369 0.0004 19 6 1.9083 -7.1600 0.0014 20 9 0.5140 -7.1677 -0.1126 21 9 2.4684 -7.8498 -1.0792 22 9 2.2820 -7.7832 1.1968 23 6 3.7016 -5.4258 0.0050 24 16 3.8429 -3.6699 -0.0001 25 1 -0.3633 0.0000 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.9317 1.9145 0.8418 29 1 3.3288 1.1079 0.0896 30 1 2.3165 1.4422 -2.1491 31 1 0.9194 2.2488 -1.3969 32 1 2.4247 3.9859 -0.4658 33 1 3.8213 3.1787 -1.2182 34 1 4.2753 6.7309 -2.0784 35 1 0.4767 -2.3220 0.0005 36 1 4.5221 -6.1280 0.0096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841629668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:16 Heat of formation + Delta-G solvation = -75.291570 kcal Electronic energy + Delta-G solvation = -23155.480395 eV Core-core repulsion = 18966.362428 eV Total energy + Delta-G solvation = -4189.117966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.39061 -47.93509 -47.83408 -40.19319 -38.48962 -35.28894 -33.46918 -31.87212 -30.23679 -28.50402 -27.40047 -27.12661 -24.28281 -23.36402 -21.30000 -20.64186 -19.89704 -18.84825 -18.79466 -18.20100 -17.45975 -16.83969 -16.33803 -16.17417 -15.50397 -14.79314 -14.65127 -14.59483 -14.37943 -14.30936 -14.16185 -14.01887 -14.00076 -13.94004 -13.68305 -13.11336 -12.53538 -12.43484 -12.13218 -11.90924 -11.70812 -11.53733 -10.92958 -10.90390 -10.62796 -10.37740 -10.18806 -10.09141 -9.80394 -9.63893 -9.44852 -9.15882 -8.40648 -8.07682 -6.05879 -4.08486 0.34639 0.75740 1.25884 1.76299 1.86736 2.34734 2.50414 3.28045 3.35003 3.37865 3.38600 3.83512 4.11780 4.40104 4.46266 4.60580 4.78768 4.86589 5.01711 5.18747 5.24347 5.30412 5.65167 5.73474 5.80580 5.90928 6.24822 6.47575 6.56204 6.68286 6.97483 7.10936 7.59556 7.72079 7.91796 7.93302 8.34897 8.98344 9.56071 11.05288 Molecular weight = 321.08amu Principal moments of inertia in cm(-1) A = 0.027796 B = 0.002014 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.096639 B =13899.331610 C =14048.279728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 C -0.066 4.066 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.269 5.269 15 N -0.544 5.544 16 C 0.336 3.664 17 N -0.531 5.531 18 C 0.020 3.980 19 C 0.547 3.453 20 F -0.164 7.164 21 F -0.171 7.171 22 F -0.171 7.171 23 C -0.260 4.260 24 S 0.224 5.776 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.401 0.599 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 -23.069 6.949 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.054 4.054 3 C -0.106 4.106 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.075 5.075 15 N -0.273 5.273 16 C -0.035 4.035 17 N -0.256 5.256 18 C -0.115 4.115 19 C 0.489 3.511 20 F -0.145 7.145 21 F -0.152 7.152 22 F -0.153 7.153 23 C -0.405 4.405 24 S 0.475 5.525 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.244 0.756 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.725 -22.646 6.987 23.762 hybrid contribution -1.918 -0.336 -0.901 2.146 sum -3.643 -22.982 6.086 24.052 Atomic orbital electron populations 1.21435 0.92623 1.04556 1.03850 1.25512 0.95009 0.93681 0.91178 1.20787 1.00007 0.88228 1.01572 1.21661 1.00930 0.98467 0.93198 1.19105 0.95377 0.89834 0.97244 1.21219 1.28534 1.03405 1.02900 0.92711 1.25016 0.95138 0.97554 0.96702 1.69955 1.31200 1.17953 1.34246 0.86608 0.77772 0.79826 0.83888 1.20662 1.21198 1.19904 1.74337 1.23998 0.90430 1.18755 1.44530 1.07004 0.98959 1.76775 1.22684 0.94687 0.87675 0.98478 1.65801 1.37356 0.95732 1.26683 1.19312 0.89886 0.92699 1.09598 1.17261 0.75524 0.84431 0.73837 1.93226 1.28900 1.96777 1.95609 1.93228 1.85207 1.81132 1.55646 1.93228 1.91308 1.84115 1.46631 1.26645 1.00017 1.00676 1.13115 1.84521 1.01704 0.97552 1.68688 0.89479 0.88364 0.91742 0.89172 0.89818 0.92977 0.92791 0.96323 0.96301 0.92942 0.75570 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.46 36.01 0.34 -1.23 16 2 C 0.14 1.71 6.55 -78.90 -0.52 1.20 16 3 C -0.07 -0.93 5.60 -27.88 -0.16 -1.08 16 4 C -0.10 -1.84 5.03 -26.74 -0.13 -1.98 16 5 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 6 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 10 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 N -0.27 -3.54 10.89 35.60 0.39 -3.15 16 15 N -0.54 -6.68 6.26 29.78 0.19 -6.49 16 16 C 0.34 4.26 8.37 -87.65 -0.73 3.52 16 17 N -0.53 -7.02 10.19 -11.36 -0.12 -7.13 16 18 C 0.02 0.24 6.16 -84.20 -0.52 -0.28 16 19 C 0.55 5.94 3.38 36.01 0.12 6.06 16 20 F -0.16 -1.98 17.01 2.25 0.04 -1.95 16 21 F -0.17 -1.75 17.22 2.25 0.04 -1.71 16 22 F -0.17 -1.77 17.30 2.25 0.04 -1.73 16 23 C -0.26 -2.49 11.02 29.04 0.32 -2.17 16 24 S 0.22 2.38 22.72 -107.50 -2.44 -0.07 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 0.94 6.91 -51.93 -0.36 0.58 16 27 H 0.06 0.56 6.31 -51.93 -0.33 0.23 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.90 7.01 -51.93 -0.36 0.54 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.40 4.32 6.51 -182.60 -1.19 3.13 16 36 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -30.04 340.52 -7.59 -37.62 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.74 Total: -2.83 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.83 Total: -8.46 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 1.19 Total: -41.98 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.12 Total: -5.39 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.44 Total: -0.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.04 -7.59 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841629668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.670 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds