Wall clock time and date at job start Sat Apr 11 2020 00:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 116.99426 * 2 1 4 4 O 1.21457 * 120.00270 * 359.97438 * 3 2 1 5 5 C 1.47860 * 119.99611 * 179.97438 * 3 2 1 6 6 C 1.39656 * 119.99478 * 179.97438 * 5 3 2 7 7 C 1.37752 * 119.99836 * 180.25559 * 6 5 3 8 8 C 1.39674 * 119.99601 * 359.51531 * 7 6 5 9 9 C 1.47853 * 120.00119 * 180.21003 * 8 7 6 10 10 O 1.21587 * 119.99950 * 147.59063 * 9 8 7 11 11 N 1.34773 * 119.99751 * 327.60153 * 9 8 7 12 12 C 1.36714 * 120.00421 * 3.41830 * 11 9 8 13 13 H 1.07999 * 119.99937 * 318.92426 * 12 11 9 14 14 C 1.39165 * 119.99625 * 138.92005 * 12 11 9 15 15 N 1.31287 * 119.99771 * 161.89404 * 14 12 11 16 16 Si 1.86795 * 120.00283 * 341.89136 * 14 12 11 17 17 H 1.48502 * 109.47410 * 95.26400 * 16 14 12 18 18 H 1.48495 * 109.47379 * 215.26504 * 16 14 12 19 19 H 1.48502 * 109.47025 * 335.26583 * 16 14 12 20 20 C 1.46508 * 119.99656 * 183.42772 * 11 9 8 21 21 C 1.52994 * 109.47150 * 89.99550 * 20 11 9 22 22 C 1.50698 * 109.47007 * 180.02562 * 21 20 11 23 23 O 1.20824 * 120.00176 * 0.02562 * 22 21 20 24 24 O 1.34234 * 120.00297 * 179.97438 * 22 21 20 25 25 C 1.39672 * 119.99720 * 0.50632 * 8 7 6 26 26 C 1.37742 * 119.99799 * 359.72905 * 25 8 7 27 27 H 1.08998 * 109.46693 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47488 * 300.00088 * 1 2 3 29 29 H 1.09005 * 109.46958 * 60.00265 * 1 2 3 30 30 H 1.07993 * 120.00382 * 359.97438 * 6 5 3 31 31 H 1.07995 * 120.00178 * 179.72759 * 7 6 5 32 32 H 0.97001 * 120.00242 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.46426 * 209.99700 * 20 11 9 34 34 H 1.09003 * 109.46717 * 329.99572 * 20 11 9 35 35 H 1.09006 * 109.47276 * 299.99761 * 21 20 11 36 36 H 1.08993 * 109.47464 * 60.00305 * 21 20 11 37 37 H 0.96697 * 117.00389 * 179.97438 * 24 22 21 38 38 H 1.08000 * 119.99748 * 179.70280 * 25 8 7 39 39 H 1.08005 * 120.00014 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5401 1.2777 0.0006 6 6 4.1739 2.5222 0.0000 7 6 5.5496 2.5944 -0.0048 8 6 6.3103 1.4230 0.0012 9 6 7.7868 1.5005 0.0007 10 8 8.4405 0.6474 0.5694 11 7 8.4081 2.5167 -0.6299 12 6 7.6730 3.5133 -1.2091 13 1 6.7731 3.2727 -1.7557 14 6 8.0843 4.8378 -1.0944 15 7 7.6121 5.7454 -1.9171 16 14 9.3083 5.3244 0.2302 17 1 10.6798 5.3248 -0.3391 18 1 8.9804 6.6829 0.7322 19 1 9.2377 4.3522 1.3506 20 6 9.8713 2.5533 -0.6947 21 6 10.3445 1.8217 -1.9523 22 6 11.8495 1.8589 -2.0187 23 8 12.4791 2.4132 -1.1491 24 8 12.4908 1.2753 -3.0434 25 6 5.6762 0.1785 0.0012 26 6 4.3007 0.1065 0.0011 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.5857 3.4278 -0.0012 31 1 6.0398 3.5567 -0.0096 32 1 7.8990 6.6686 -1.8374 33 1 10.2075 3.5896 -0.7290 34 1 10.2863 2.0656 0.1873 35 1 10.0082 0.7854 -1.9181 36 1 9.9294 2.3095 -2.8343 37 1 13.4565 1.3255 -3.0429 38 1 6.2645 -0.7272 0.0010 39 1 3.8103 -0.8558 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598956707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:47 Heat of formation + Delta-G solvation = -167.404444 kcal Electronic energy + Delta-G solvation = -26626.141265 eV Core-core repulsion = 22499.840103 eV Total energy + Delta-G solvation = -4126.301162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46878 -40.11702 -39.46815 -37.72784 -36.33168 -36.02442 -35.35446 -32.58570 -31.79602 -30.68557 -30.38767 -27.83426 -25.43197 -25.32103 -23.61650 -22.17887 -21.17638 -20.72304 -19.45246 -18.14564 -17.86234 -17.58372 -16.92575 -16.48787 -16.43649 -16.31379 -15.69980 -15.17172 -14.78562 -14.51420 -14.33153 -13.85591 -13.59686 -13.43175 -13.34293 -13.07514 -12.86096 -12.75489 -12.58828 -12.24890 -12.12493 -11.91271 -11.70989 -11.38297 -11.27574 -10.99013 -10.84147 -10.72441 -10.45949 -10.39143 -10.24453 -10.04399 -9.46468 -8.90563 -8.66147 -8.54491 -8.05733 -6.69985 -4.35446 0.77985 1.77385 2.43411 2.57469 2.71600 2.99732 3.13056 3.15799 3.21495 3.56461 3.95389 4.13113 4.28851 4.69912 4.81900 5.00278 5.08030 5.23795 5.23942 5.27759 5.38469 5.40650 5.55527 5.68013 5.76215 5.83398 5.95737 6.11462 6.16952 6.28538 6.38401 6.42034 6.55307 6.65917 6.78164 6.93906 7.05316 7.25267 7.79178 7.80554 7.99253 8.07954 8.65548 9.02672 9.35715 10.36686 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.003558 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.639695 B = 7867.526585 C = 8899.063816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.510 3.490 4 O -0.509 6.509 5 C -0.126 4.126 6 C -0.071 4.071 7 C -0.079 4.079 8 C -0.062 4.062 9 C 0.516 3.484 10 O -0.585 6.585 11 N -0.450 5.450 12 C -0.362 4.362 13 H 0.116 0.884 14 C 0.073 3.927 15 N -0.844 5.844 16 Si 0.868 3.132 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.257 1.257 20 C 0.111 3.889 21 C -0.123 4.123 22 C 0.485 3.515 23 O -0.519 6.519 24 O -0.519 6.519 25 C -0.095 4.095 26 C -0.082 4.082 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.177 0.823 32 H 0.280 0.720 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.404 0.596 38 H 0.133 0.867 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -8.540 -0.324 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.128 4.128 6 C -0.089 4.089 7 C -0.097 4.097 8 C -0.065 4.065 9 C 0.306 3.694 10 O -0.470 6.470 11 N -0.169 5.169 12 C -0.488 4.488 13 H 0.134 0.866 14 C -0.138 4.138 15 N -0.477 5.477 16 Si 0.694 3.306 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.181 1.181 20 C -0.012 4.012 21 C -0.162 4.162 22 C 0.327 3.673 23 O -0.408 6.408 24 O -0.331 6.331 25 C -0.114 4.114 26 C -0.100 4.100 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.194 0.806 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.262 0.738 38 H 0.151 0.849 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.752 -8.296 0.111 9.561 hybrid contribution 1.008 0.607 0.370 1.234 sum -3.743 -7.689 0.481 8.565 Atomic orbital electron populations 1.23241 0.76435 1.03493 1.02542 1.86559 1.23209 1.33023 1.84541 1.21454 0.89400 0.81176 0.72353 1.90813 1.66861 1.36039 1.46113 1.19168 0.88154 0.95474 1.09998 1.21311 0.94900 0.96182 0.96536 1.22459 0.92248 1.01296 0.93652 1.20218 0.94015 0.93779 0.98457 1.18322 0.87098 0.83721 0.80263 1.90672 1.66749 1.42394 1.47191 1.43509 1.03826 1.21822 1.47766 1.19238 1.11011 0.84789 1.33785 0.86638 1.25380 0.96884 0.95619 0.95883 1.69658 1.41965 1.03399 1.32659 0.87026 0.81259 0.78857 0.83453 1.19313 1.20954 1.18056 1.21473 0.82762 1.00618 0.96318 1.21736 0.86225 1.04931 1.03283 1.23666 0.92071 0.73691 0.77857 1.90705 1.69155 1.41814 1.39085 1.84575 1.27048 1.72969 1.48507 1.21154 0.93770 0.97426 0.99024 1.21195 0.93494 0.97478 0.97839 0.88180 0.91957 0.91915 0.84614 0.80616 0.90902 0.90431 0.89790 0.87472 0.86537 0.73770 0.84888 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.58 9.80 -40.51 -0.40 -4.98 16 3 C 0.51 7.87 7.90 34.67 0.27 8.14 16 4 O -0.51 -8.90 16.12 -19.23 -0.31 -9.21 16 5 C -0.13 -2.01 5.88 -104.90 -0.62 -2.62 16 6 C -0.07 -1.21 9.58 -39.23 -0.38 -1.58 16 7 C -0.08 -1.47 7.74 -39.22 -0.30 -1.77 16 8 C -0.06 -1.18 5.52 -104.89 -0.58 -1.76 16 9 C 0.52 11.18 7.40 -12.33 -0.09 11.09 16 10 O -0.59 -13.65 16.32 5.29 0.09 -13.56 16 11 N -0.45 -9.85 2.12 -115.89 -0.25 -10.09 16 12 C -0.36 -8.29 6.55 -15.03 -0.10 -8.39 16 13 H 0.12 2.76 6.44 -52.49 -0.34 2.43 16 14 C 0.07 1.73 5.31 -17.44 -0.09 1.64 16 15 N -0.84 -21.07 13.95 55.51 0.77 -20.30 16 16 Si 0.87 19.32 24.92 -169.99 -4.24 15.09 16 17 H -0.27 -5.99 6.74 56.52 0.38 -5.61 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.11 2.32 3.49 -4.04 -0.01 2.31 16 21 C -0.12 -2.14 6.13 -27.89 -0.17 -2.31 16 22 C 0.48 7.98 8.33 36.00 0.30 8.28 16 23 O -0.52 -10.06 16.74 -18.75 -0.31 -10.37 16 24 O -0.52 -6.60 13.42 -39.27 -0.53 -7.13 16 25 C -0.09 -1.56 9.59 -39.23 -0.38 -1.93 16 26 C -0.08 -1.20 9.60 -39.23 -0.38 -1.57 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.14 2.23 7.64 -52.49 -0.40 1.83 16 31 H 0.18 3.59 5.40 -52.49 -0.28 3.30 16 32 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.08 1.71 3.37 -51.93 -0.18 1.53 16 34 H 0.08 1.81 7.33 -51.93 -0.38 1.43 16 35 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 37 H 0.40 3.21 9.10 45.56 0.41 3.62 16 38 H 0.13 2.04 7.96 -52.49 -0.42 1.62 16 39 H 0.13 1.61 7.60 -52.48 -0.40 1.21 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -30.09 341.78 -4.72 -34.81 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.25 Total: 9.68 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -1.45 Total: 10.91 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.53 Total: -30.39 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.46 Total: -45.25 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.24 Total: 15.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.09 -4.72 -34.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598956707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.592 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds