Wall clock time and date at job start Sat Apr 11 2020 00:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 116.99426 * 2 1 4 4 O 1.21457 * 120.00270 * 359.97438 * 3 2 1 5 5 C 1.47860 * 119.99611 * 179.97438 * 3 2 1 6 6 C 1.39656 * 119.99478 * 179.97438 * 5 3 2 7 7 C 1.37752 * 119.99836 * 180.25559 * 6 5 3 8 8 C 1.39674 * 119.99601 * 359.51531 * 7 6 5 9 9 C 1.47853 * 120.00119 * 180.21003 * 8 7 6 10 10 O 1.21587 * 119.99950 * 147.59063 * 9 8 7 11 11 N 1.34773 * 119.99751 * 327.60153 * 9 8 7 12 12 C 1.36714 * 120.00421 * 3.41830 * 11 9 8 13 13 H 1.07999 * 119.99937 * 318.92426 * 12 11 9 14 14 C 1.39165 * 119.99625 * 138.92005 * 12 11 9 15 15 N 1.31287 * 119.99771 * 161.89404 * 14 12 11 16 16 Si 1.86795 * 120.00283 * 341.89136 * 14 12 11 17 17 H 1.48502 * 109.47410 * 95.26400 * 16 14 12 18 18 H 1.48495 * 109.47379 * 215.26504 * 16 14 12 19 19 H 1.48502 * 109.47025 * 335.26583 * 16 14 12 20 20 C 1.46508 * 119.99656 * 183.42772 * 11 9 8 21 21 C 1.52994 * 109.47150 * 89.99550 * 20 11 9 22 22 C 1.50698 * 109.47007 * 180.02562 * 21 20 11 23 23 O 1.20824 * 120.00176 * 0.02562 * 22 21 20 24 24 O 1.34234 * 120.00297 * 179.97438 * 22 21 20 25 25 C 1.39672 * 119.99720 * 0.50632 * 8 7 6 26 26 C 1.37742 * 119.99799 * 359.72905 * 25 8 7 27 27 H 1.08998 * 109.46693 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47488 * 300.00088 * 1 2 3 29 29 H 1.09005 * 109.46958 * 60.00265 * 1 2 3 30 30 H 1.07993 * 120.00382 * 359.97438 * 6 5 3 31 31 H 1.07995 * 120.00178 * 179.72759 * 7 6 5 32 32 H 0.97001 * 120.00242 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.46426 * 209.99700 * 20 11 9 34 34 H 1.09003 * 109.46717 * 329.99572 * 20 11 9 35 35 H 1.09006 * 109.47276 * 299.99761 * 21 20 11 36 36 H 1.08993 * 109.47464 * 60.00305 * 21 20 11 37 37 H 0.96697 * 117.00389 * 179.97438 * 24 22 21 38 38 H 1.08000 * 119.99748 * 179.70280 * 25 8 7 39 39 H 1.08005 * 120.00014 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5401 1.2777 0.0006 6 6 4.1739 2.5222 0.0000 7 6 5.5496 2.5944 -0.0048 8 6 6.3103 1.4230 0.0012 9 6 7.7868 1.5005 0.0007 10 8 8.4405 0.6474 0.5694 11 7 8.4081 2.5167 -0.6299 12 6 7.6730 3.5133 -1.2091 13 1 6.7731 3.2727 -1.7557 14 6 8.0843 4.8378 -1.0944 15 7 7.6121 5.7454 -1.9171 16 14 9.3083 5.3244 0.2302 17 1 10.6798 5.3248 -0.3391 18 1 8.9804 6.6829 0.7322 19 1 9.2377 4.3522 1.3506 20 6 9.8713 2.5533 -0.6947 21 6 10.3445 1.8217 -1.9523 22 6 11.8495 1.8589 -2.0187 23 8 12.4791 2.4132 -1.1491 24 8 12.4908 1.2753 -3.0434 25 6 5.6762 0.1785 0.0012 26 6 4.3007 0.1065 0.0011 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.5857 3.4278 -0.0012 31 1 6.0398 3.5567 -0.0096 32 1 7.8990 6.6686 -1.8374 33 1 10.2075 3.5896 -0.7290 34 1 10.2863 2.0656 0.1873 35 1 10.0082 0.7854 -1.9181 36 1 9.9294 2.3095 -2.8343 37 1 13.4565 1.3255 -3.0429 38 1 6.2645 -0.7272 0.0010 39 1 3.8103 -0.8558 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598956707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:46 Heat of formation + Delta-G solvation = -186.399797 kcal Electronic energy + Delta-G solvation = -26626.964966 eV Core-core repulsion = 22499.840103 eV Total energy + Delta-G solvation = -4127.124862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75513 -41.44306 -40.93002 -39.13033 -37.48858 -37.34590 -36.99648 -34.32277 -33.32394 -32.05508 -31.80232 -28.74904 -27.16530 -26.77692 -24.99512 -23.51438 -22.45623 -22.05777 -21.09293 -19.65503 -19.11578 -18.94451 -18.15270 -18.09559 -17.84356 -17.37281 -17.06028 -16.74059 -16.40263 -16.07325 -15.58252 -15.30046 -15.05593 -14.77090 -14.54812 -14.48054 -14.37771 -14.16562 -14.13192 -13.61988 -13.36156 -13.30874 -13.01164 -12.96010 -12.70545 -12.59976 -12.16803 -11.99162 -11.81054 -11.79890 -11.71533 -11.67497 -11.22944 -10.66306 -10.04887 -9.95958 -9.78075 -8.56055 -6.20286 -0.57150 0.44920 1.12697 1.15393 1.26191 1.33423 1.38755 1.66104 1.81878 2.03645 2.12387 2.61005 2.75798 2.99450 3.65303 3.77860 3.82133 3.96000 4.01983 4.04583 4.31347 4.35044 4.37773 4.40413 4.47343 4.54761 4.63047 4.73872 4.80051 4.82951 5.12259 5.14814 5.24837 5.31123 5.41641 5.53616 5.54408 5.84221 6.00257 6.15972 6.65021 6.84313 6.94742 7.24914 7.59936 8.54301 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.003558 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.639695 B = 7867.526585 C = 8899.063816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.516 3.484 4 O -0.534 6.534 5 C -0.124 4.124 6 C -0.074 4.074 7 C -0.086 4.086 8 C -0.086 4.086 9 C 0.515 3.485 10 O -0.604 6.604 11 N -0.459 5.459 12 C -0.343 4.343 13 H 0.105 0.895 14 C 0.050 3.950 15 N -0.876 5.876 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.270 1.270 20 C 0.109 3.891 21 C -0.118 4.118 22 C 0.496 3.504 23 O -0.553 6.553 24 O -0.504 6.504 25 C -0.088 4.088 26 C -0.061 4.061 27 H 0.138 0.862 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.153 0.847 32 H 0.283 0.717 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.429 0.571 38 H 0.148 0.852 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 -10.820 -0.673 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.362 3.638 4 O -0.425 6.425 5 C -0.125 4.125 6 C -0.093 4.093 7 C -0.104 4.104 8 C -0.089 4.089 9 C 0.307 3.693 10 O -0.490 6.490 11 N -0.178 5.178 12 C -0.470 4.470 13 H 0.122 0.878 14 C -0.158 4.158 15 N -0.512 5.512 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.014 4.014 21 C -0.156 4.156 22 C 0.340 3.660 23 O -0.444 6.444 24 O -0.318 6.318 25 C -0.107 4.107 26 C -0.079 4.079 27 H 0.156 0.844 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.291 0.709 38 H 0.165 0.835 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.746 -10.601 -0.260 12.060 hybrid contribution 1.208 1.139 0.483 1.729 sum -4.537 -9.462 0.223 10.496 Atomic orbital electron populations 1.23629 0.74127 1.06064 1.02662 1.86536 1.25348 1.31167 1.83743 1.21282 0.89036 0.81639 0.71825 1.90810 1.67305 1.37116 1.47317 1.19317 0.89033 0.95343 1.08838 1.21273 0.94133 0.97166 0.96690 1.22127 0.92987 1.00242 0.95082 1.20176 0.92594 0.95181 1.00977 1.18731 0.88234 0.83014 0.79357 1.90645 1.67584 1.42897 1.47850 1.43579 1.04256 1.21828 1.48172 1.19055 1.10469 0.84864 1.32593 0.87800 1.25630 0.97740 0.95771 0.96623 1.69683 1.43654 1.03773 1.34057 0.86479 0.80230 0.78296 0.81932 1.19612 1.20643 1.19432 1.21419 0.82177 1.00175 0.97671 1.21563 0.87415 1.05085 1.01541 1.23295 0.91625 0.73179 0.77927 1.90705 1.69694 1.43464 1.40542 1.84499 1.29194 1.71642 1.46450 1.21331 0.94661 0.96665 0.98007 1.21498 0.92532 0.98498 0.95361 0.84401 0.91832 0.91908 0.84565 0.82942 0.90679 0.91786 0.90977 0.86315 0.86015 0.70920 0.83452 0.81146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.85 9.80 -56.17 -0.55 -8.40 16 3 C 0.52 14.75 7.90 70.37 0.56 15.30 16 4 O -0.53 -17.96 16.12 19.98 0.32 -17.63 16 5 C -0.12 -3.69 5.88 -20.04 -0.12 -3.81 16 6 C -0.07 -2.51 9.58 22.50 0.22 -2.30 16 7 C -0.09 -3.27 7.74 22.50 0.17 -3.09 16 8 C -0.09 -3.29 5.52 -20.04 -0.11 -3.40 16 9 C 0.52 22.43 7.40 86.79 0.64 23.07 16 10 O -0.60 -28.06 16.32 -3.99 -0.07 -28.12 16 11 N -0.46 -20.36 2.12 -638.82 -1.35 -21.71 16 12 C -0.34 -16.04 6.55 84.15 0.55 -15.49 16 13 H 0.10 5.11 6.44 -2.91 -0.02 5.09 16 14 C 0.05 2.41 5.31 85.00 0.45 2.86 16 15 N -0.88 -44.68 13.95 21.70 0.30 -44.37 16 16 Si 0.90 40.73 24.92 68.60 1.71 42.44 16 17 H -0.27 -12.18 6.74 99.48 0.67 -11.51 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 C 0.11 4.58 3.49 86.38 0.30 4.88 16 21 C -0.12 -4.01 6.13 29.85 0.18 -3.83 16 22 C 0.50 15.75 8.33 71.24 0.59 16.34 16 23 O -0.55 -21.16 16.74 21.97 0.37 -20.79 16 24 O -0.50 -11.59 13.42 -51.46 -0.69 -12.28 16 25 C -0.09 -2.70 9.59 22.50 0.22 -2.48 16 26 C -0.06 -1.59 9.60 22.50 0.22 -1.38 16 27 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.14 4.53 7.64 -2.91 -0.02 4.50 16 31 H 0.15 6.49 5.40 -2.91 -0.02 6.48 16 32 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 33 H 0.06 2.87 3.37 -2.39 -0.01 2.86 16 34 H 0.07 3.18 7.33 -2.39 -0.02 3.16 16 35 H 0.12 3.77 8.14 -2.38 -0.02 3.75 16 36 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 37 H 0.43 5.59 9.10 -74.06 -0.67 4.91 16 38 H 0.15 4.12 7.96 -2.91 -0.02 4.10 16 39 H 0.17 3.25 7.60 -2.91 -0.02 3.22 16 Total: -1.00 -65.22 341.78 5.53 -59.69 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.42 Total: 22.87 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: 5.07 Total: 28.30 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.05 Total: -66.09 kcal Atomic # 8 Polarization: -86.60 SS G_CDS: -0.62 Total: -87.22 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.71 Total: 42.44 kcal Total: -65.22 5.53 -59.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598956707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.710 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds