Wall clock time and date at job start Sat Apr 11 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34734 * 117.00283 * 2 1 4 4 O 1.21487 * 119.99450 * 359.97438 * 3 2 1 5 5 C 1.47593 * 120.00240 * 180.02562 * 3 2 1 6 6 C 1.39716 * 120.05451 * 5.41281 * 5 3 2 7 7 C 1.37632 * 120.08198 * 179.97438 * 6 5 3 8 8 C 1.39771 * 120.19364 * 359.97438 * 7 6 5 9 9 C 1.47959 * 119.94624 * 179.97438 * 8 7 6 10 10 O 1.21447 * 119.99666 * 179.97438 * 9 8 7 11 11 O 1.34681 * 119.99951 * 0.02562 * 9 8 7 12 12 C 1.39288 * 120.10274 * 359.74888 * 8 7 6 13 13 C 1.38750 * 119.92353 * 0.50769 * 12 8 7 14 14 N 1.39299 * 120.10074 * 179.77480 * 13 12 8 15 15 C 1.34778 * 120.00057 * 35.25976 * 14 13 12 16 16 O 1.21281 * 119.99756 * 355.57955 * 15 14 13 17 17 C 1.50691 * 119.99997 * 175.57204 * 15 14 13 18 18 H 1.09007 * 109.47423 * 300.00460 * 17 15 14 19 19 C 1.53003 * 109.47343 * 60.00446 * 17 15 14 20 20 C 1.50704 * 109.47244 * 180.02562 * 17 15 14 21 21 H 1.08007 * 119.99885 * 0.02562 * 20 17 15 22 22 C 1.37875 * 120.00313 * 180.02562 * 20 17 15 23 23 N 1.31522 * 119.99690 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 120.00050 * 180.02562 * 22 20 17 25 25 H 1.48490 * 109.47132 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47219 * 120.00108 * 24 22 20 27 27 H 1.48503 * 109.47029 * 239.99687 * 24 22 20 28 28 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46533 * 300.00076 * 1 2 3 30 30 H 1.09000 * 109.47049 * 60.00179 * 1 2 3 31 31 H 1.08001 * 119.95981 * 359.97438 * 6 5 3 32 32 H 1.07999 * 119.90513 * 180.02562 * 7 6 5 33 33 H 0.96710 * 116.99906 * 179.97438 * 11 9 8 34 34 H 1.08008 * 120.04000 * 180.27306 * 12 8 7 35 35 H 0.96998 * 119.99935 * 215.27263 * 14 13 12 36 36 H 1.08993 * 109.46761 * 299.99983 * 19 17 15 37 37 H 1.08995 * 109.47080 * 179.97438 * 19 17 15 38 38 H 1.09003 * 109.46403 * 59.99819 * 19 17 15 39 39 H 0.97003 * 119.99550 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5377 1.2777 -0.0006 6 6 4.2994 0.1121 -0.1152 7 6 5.6739 0.1835 -0.1163 8 6 6.3136 1.4211 -0.0035 9 6 7.7915 1.4914 -0.0047 10 8 8.3483 2.5664 0.0928 11 8 8.5193 0.3636 -0.1150 12 6 5.5619 2.5887 0.1054 13 6 4.1760 2.5215 0.1124 14 7 3.4207 3.6864 0.2259 15 6 3.8497 4.8266 -0.3508 16 8 4.9307 4.8590 -0.8997 17 6 2.9861 6.0609 -0.3137 18 1 2.0373 5.8557 -0.8097 19 6 2.7257 6.4578 1.1408 20 6 3.6902 7.1882 -1.0241 21 1 4.6655 7.0267 -1.4593 22 6 3.0895 8.4256 -1.1184 23 7 1.9018 8.6221 -0.5889 24 14 3.9621 9.8226 -1.9995 25 1 5.2754 9.3466 -2.5031 26 1 3.1312 10.2836 -3.1409 27 1 4.1733 10.9486 -1.0546 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8091 -0.8462 -0.2030 32 1 6.2599 -0.7193 -0.2055 33 1 9.4815 0.4599 -0.1115 34 1 6.0572 3.5449 0.1881 35 1 2.5861 3.6771 0.7201 36 1 2.2163 5.6424 1.6542 37 1 2.1015 7.3508 1.1676 38 1 3.6745 6.6630 1.6367 39 1 1.4790 9.4926 -0.6556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598966353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:55 Heat of formation + Delta-G solvation = -201.561054 kcal Electronic energy + Delta-G solvation = -26912.027183 eV Core-core repulsion = 22784.244879 eV Total energy + Delta-G solvation = -4127.782304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.31795 -41.30040 -40.96206 -39.29784 -37.63600 -37.16161 -35.91620 -35.78588 -33.04226 -32.78602 -30.68040 -28.81406 -27.28655 -26.59976 -25.35170 -23.58849 -23.19470 -22.07808 -21.17921 -19.49170 -19.07182 -18.85565 -18.33320 -18.00540 -17.92462 -17.40751 -17.07773 -16.76935 -16.51543 -16.41956 -15.57115 -15.40296 -15.12077 -14.76372 -14.68472 -14.46986 -14.40871 -13.84194 -13.81295 -13.53664 -13.09030 -13.00121 -12.82893 -12.70731 -12.65400 -12.64504 -12.29892 -12.08005 -11.95108 -11.83190 -11.81128 -11.40477 -11.11325 -10.70621 -10.49381 -10.33366 -9.40240 -8.19704 -6.31315 -0.99242 0.09024 0.89484 1.37584 1.39071 1.52363 1.53012 1.57465 1.71286 1.80774 2.12971 2.43153 2.59768 3.09703 3.49773 3.63841 3.84717 3.96986 4.00439 4.12637 4.31226 4.38730 4.40059 4.64378 4.71071 4.75850 4.83829 4.88135 4.93983 4.97149 5.11276 5.18044 5.30893 5.40241 5.50506 5.63145 5.68117 5.85193 6.09348 6.43438 6.55860 6.76834 6.89581 7.17265 7.37808 8.86799 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.004479 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.089912 B = 6250.305197 C = 8652.113364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.512 3.488 4 O -0.528 6.528 5 C -0.138 4.138 6 C -0.033 4.033 7 C -0.077 4.077 8 C -0.080 4.080 9 C 0.533 3.467 10 O -0.546 6.546 11 O -0.488 6.488 12 C -0.102 4.102 13 C 0.189 3.811 14 N -0.664 5.664 15 C 0.522 3.478 16 O -0.553 6.553 17 C 0.029 3.971 18 H 0.042 0.958 19 C -0.121 4.121 20 C -0.531 4.531 21 H 0.051 0.949 22 C 0.021 3.979 23 N -0.910 5.910 24 Si 0.960 3.040 25 H -0.280 1.280 26 H -0.273 1.273 27 H -0.272 1.272 28 H 0.142 0.858 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.193 0.807 32 H 0.190 0.810 33 H 0.437 0.563 34 H 0.124 0.876 35 H 0.424 0.576 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -25.811 4.059 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.257 6.257 3 C 0.358 3.642 4 O -0.418 6.418 5 C -0.143 4.143 6 C -0.051 4.051 7 C -0.095 4.095 8 C -0.082 4.082 9 C 0.377 3.623 10 O -0.437 6.437 11 O -0.302 6.302 12 C -0.123 4.123 13 C 0.091 3.909 14 N -0.312 5.312 15 C 0.314 3.686 16 O -0.429 6.429 17 C 0.008 3.992 18 H 0.059 0.941 19 C -0.179 4.179 20 C -0.569 4.569 21 H 0.070 0.930 22 C -0.179 4.179 23 N -0.549 5.549 24 Si 0.785 3.215 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.197 1.197 28 H 0.160 0.840 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.210 0.790 32 H 0.207 0.793 33 H 0.300 0.700 34 H 0.142 0.858 35 H 0.267 0.733 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.793 -25.043 3.709 25.379 hybrid contribution 0.346 1.710 -0.264 1.765 sum 2.139 -23.333 3.445 23.682 Atomic orbital electron populations 1.23652 0.73922 1.06210 1.02655 1.86505 1.25320 1.30264 1.83649 1.21086 0.88651 0.82094 0.72368 1.90807 1.67213 1.36942 1.46872 1.19269 0.89962 0.93855 1.11175 1.21696 0.93097 0.97699 0.92595 1.21730 0.94502 0.96837 0.96471 1.19216 0.89551 0.94793 1.04612 1.20817 0.88506 0.81439 0.71525 1.90950 1.73668 1.32094 1.47028 1.84455 1.27354 1.34031 1.84354 1.21204 0.92004 0.99456 0.99587 1.17818 0.90510 0.86049 0.96507 1.43972 1.26319 1.07343 1.53608 1.21958 0.86868 0.84841 0.74982 1.90543 1.23465 1.84538 1.44380 1.18812 0.94525 0.88898 0.96958 0.94056 1.21582 1.00215 1.02141 0.93983 1.21266 1.04170 0.95555 1.35909 0.93045 1.25624 0.95639 1.00553 0.96061 1.69967 1.15325 1.24272 1.45329 0.85478 0.78452 0.78928 0.78636 1.20483 1.19810 1.19704 0.83988 0.91741 0.92310 0.79036 0.79272 0.70037 0.85766 0.73288 0.93579 0.90455 0.95267 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.34 -6.31 9.82 -56.44 -0.55 -6.86 16 3 C 0.51 13.30 7.87 70.29 0.55 13.85 16 4 O -0.53 -17.35 13.75 19.88 0.27 -17.07 16 5 C -0.14 -3.56 5.89 -19.96 -0.12 -3.68 16 6 C -0.03 -0.54 9.59 22.48 0.22 -0.32 16 7 C -0.08 -1.25 9.59 22.50 0.22 -1.04 16 8 C -0.08 -2.08 5.87 -20.08 -0.12 -2.20 16 9 C 0.53 13.54 8.28 70.40 0.58 14.12 16 10 O -0.55 -19.25 17.11 20.01 0.34 -18.91 16 11 O -0.49 -6.84 12.66 -55.90 -0.71 -7.55 16 12 C -0.10 -3.60 8.22 22.65 0.19 -3.41 16 13 C 0.19 6.50 6.30 38.57 0.24 6.74 16 14 N -0.66 -26.60 4.45 -303.03 -1.35 -27.95 16 15 C 0.52 25.90 6.98 87.65 0.61 26.51 16 16 O -0.55 -30.53 12.90 -3.03 -0.04 -30.57 16 17 C 0.03 1.56 2.65 -12.29 -0.03 1.53 16 18 H 0.04 2.34 8.14 -2.38 -0.02 2.32 16 19 C -0.12 -5.88 8.87 71.98 0.64 -5.24 16 20 C -0.53 -31.83 8.38 25.60 0.21 -31.62 16 21 H 0.05 3.28 6.75 -2.91 -0.02 3.26 16 22 C 0.02 1.19 5.30 84.65 0.45 1.64 16 23 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 24 Si 0.96 46.17 29.54 68.60 2.03 48.20 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 28 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.19 1.55 7.61 -2.91 -0.02 1.53 16 32 H 0.19 1.53 7.59 -2.91 -0.02 1.51 16 33 H 0.44 2.30 9.11 -74.05 -0.67 1.63 16 34 H 0.12 5.51 5.81 -2.91 -0.02 5.49 16 35 H 0.42 15.91 5.87 -92.71 -0.54 15.36 16 36 H 0.05 1.87 7.47 -2.39 -0.02 1.85 16 37 H 0.08 4.07 6.07 -2.39 -0.01 4.05 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -81.55 342.51 5.00 -76.55 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.08 Total: 17.88 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 4.84 Total: 18.46 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.11 Total: -80.13 kcal Atomic # 8 Polarization: -80.27 SS G_CDS: -0.69 Total: -80.96 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -81.55 5.00 -76.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598966353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.010 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds