Wall clock time and date at job start Sat Apr 11 2020 00:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34823 * 116.99974 * 2 1 4 4 O 1.21552 * 119.99803 * 0.02562 * 3 2 1 5 5 C 1.47159 * 120.00141 * 180.02562 * 3 2 1 6 6 C 1.39517 * 120.44730 * 356.02121 * 5 3 2 7 7 C 1.37823 * 120.18688 * 180.02562 * 6 5 3 8 8 C 1.39725 * 121.16023 * 359.97438 * 7 6 5 9 9 C 1.48335 * 119.54404 * 180.02562 * 8 7 6 10 10 C 1.39502 * 120.04943 * 180.02562 * 9 8 7 11 11 C 1.38109 * 120.17777 * 179.97438 * 10 9 8 12 12 C 1.38057 * 120.28345 * 359.95937 * 11 10 9 13 13 C 1.50702 * 119.94951 * 180.02562 * 12 11 10 14 14 C 1.39692 * 120.10172 * 359.76477 * 12 11 10 15 15 C 1.43200 * 120.09232 * 180.27889 * 14 12 11 16 16 N 9.72715 * 131.60772 * 357.93509 * 3 1 2 17 17 C 1.39099 * 120.04997 * 0.02562 * 9 8 7 18 18 C 1.38706 * 120.91173 * 0.29760 * 8 7 6 19 19 C 1.40566 * 119.73227 * 359.45672 * 18 8 7 20 20 C 1.40909 * 120.55210 * 180.24431 * 19 18 8 21 21 H 1.07996 * 120.00392 * 213.23235 * 20 19 18 22 22 C 1.40283 * 119.99536 * 33.23057 * 20 19 18 23 23 N 1.30624 * 120.00530 * 9.36648 * 22 20 19 24 24 Si 1.86805 * 119.99677 * 189.36363 * 22 20 19 25 25 H 1.48504 * 109.46957 * 60.00128 * 24 22 20 26 26 H 1.48502 * 109.47102 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47432 * 300.00186 * 24 22 20 28 28 H 1.09000 * 109.46721 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46848 * 299.99262 * 1 2 3 30 30 H 1.08993 * 109.47806 * 59.99437 * 1 2 3 31 31 H 1.07994 * 119.90441 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.41688 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.91160 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.85806 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.46980 * 90.00158 * 13 12 11 36 36 H 1.09003 * 109.47110 * 209.99566 * 13 12 11 37 37 H 1.09000 * 109.47201 * 330.00033 * 13 12 11 38 38 H 1.08000 * 120.14501 * 0.02600 * 17 9 8 39 39 H 1.08004 * 120.13353 * 179.70510 * 18 8 7 40 40 H 0.96999 * 119.99986 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4020 2.2207 0.0005 5 6 3.5337 1.2783 -0.0006 6 6 4.3025 0.1171 0.0823 7 6 5.6785 0.1956 0.0819 8 6 6.3324 1.4276 -0.0013 9 6 7.8152 1.4703 0.0006 10 6 8.4789 2.6945 -0.0815 11 6 9.8593 2.7374 -0.0794 12 6 10.5919 1.5703 0.0046 13 6 12.0979 1.6259 0.0068 14 6 9.9394 0.3383 0.0931 15 6 10.6996 -0.8717 0.1863 16 7 11.3026 -1.8316 0.2621 17 6 8.5459 0.2896 0.0842 18 6 5.6142 2.6116 -0.0799 19 6 4.2090 2.5754 -0.0878 20 6 3.4623 3.7673 -0.1723 21 1 2.5090 3.8441 0.3293 22 6 3.9572 4.8543 -0.9081 23 7 5.0135 4.7060 -1.6621 24 14 3.1056 6.5140 -0.8097 25 1 3.1201 6.9953 0.5951 26 1 3.8184 7.4882 -1.6747 27 1 1.7009 6.3778 -1.2718 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 3.8181 -0.8459 0.1470 32 1 6.2616 -0.7113 0.1462 33 1 7.9117 3.6113 -0.1468 34 1 10.3678 3.6880 -0.1436 35 1 12.4569 1.7105 1.0325 36 1 12.4957 0.7164 -0.4434 37 1 12.4304 2.4909 -0.5670 38 1 8.0361 -0.6604 0.1475 39 1 6.1326 3.5573 -0.1390 40 1 5.3555 5.4575 -2.1711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244494547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:04 Heat of formation + Delta-G solvation = -32.251776 kcal Electronic energy + Delta-G solvation = -25191.066968 eV Core-core repulsion = 21513.768480 eV Total energy + Delta-G solvation = -3677.298488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06053 -40.70220 -38.88322 -37.46668 -36.98091 -35.76273 -34.33217 -32.47790 -31.53179 -31.34539 -28.75951 -27.71887 -27.15829 -24.82209 -24.14771 -22.69809 -22.41399 -21.26231 -19.59177 -18.89514 -18.28435 -17.61115 -17.00252 -16.90885 -16.78270 -16.55653 -15.80419 -15.36448 -15.10017 -14.92557 -14.86027 -14.52587 -14.22372 -14.11548 -14.04453 -13.97581 -13.73661 -13.56343 -13.29799 -13.14116 -12.94365 -12.87212 -12.72808 -12.58792 -12.35416 -12.31049 -12.08357 -11.85614 -11.56845 -11.32551 -11.18954 -10.69848 -10.20587 -9.90647 -9.34496 -8.85063 -8.64575 -6.46576 -0.34448 -0.01892 0.72457 1.03176 1.38222 1.48223 1.53957 1.59159 1.86112 2.15475 2.19537 2.20849 2.68603 2.84783 2.99073 3.66170 3.74584 3.87226 4.02250 4.23286 4.35166 4.39432 4.41766 4.42899 4.53548 4.62076 4.69388 4.73679 4.77680 4.81474 5.01517 5.07029 5.14856 5.19923 5.21177 5.28259 5.48094 5.50572 5.57593 5.66842 5.82099 5.91170 5.99430 6.10431 6.26966 6.42496 6.61258 6.73520 6.86043 7.28880 8.18103 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.003923 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.305948 B = 7135.190285 C = 9363.021590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.500 3.500 4 O -0.552 6.552 5 C -0.290 4.290 6 C -0.028 4.028 7 C -0.240 4.240 8 C -0.017 4.017 9 C -0.053 4.053 10 C -0.078 4.078 11 C -0.112 4.112 12 C -0.035 4.035 13 C -0.119 4.119 14 C -0.047 4.047 15 C 0.285 3.715 16 N -0.459 5.459 17 C -0.059 4.059 18 C -0.156 4.156 19 C 0.123 3.877 20 C -0.447 4.447 21 H 0.089 0.911 22 C 0.039 3.961 23 N -0.796 5.796 24 Si 0.979 3.021 25 H -0.256 1.256 26 H -0.254 1.254 27 H -0.275 1.275 28 H 0.133 0.867 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.164 0.836 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.561 -1.026 1.577 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.352 3.648 4 O -0.446 6.446 5 C -0.293 4.293 6 C -0.046 4.046 7 C -0.259 4.259 8 C -0.018 4.018 9 C -0.053 4.053 10 C -0.097 4.097 11 C -0.129 4.129 12 C -0.038 4.038 13 C -0.175 4.175 14 C -0.050 4.050 15 C -0.029 4.029 16 N -0.135 5.135 17 C -0.079 4.079 18 C -0.175 4.175 19 C 0.119 3.881 20 C -0.474 4.474 21 H 0.107 0.893 22 C -0.180 4.180 23 N -0.420 5.420 24 Si 0.800 3.200 25 H -0.180 1.180 26 H -0.178 1.178 27 H -0.200 1.200 28 H 0.151 0.849 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.181 0.819 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.144 0.856 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.445 -2.130 1.516 8.840 hybrid contribution -1.461 0.959 -0.191 1.758 sum 6.984 -1.171 1.325 7.204 Atomic orbital electron populations 1.23370 0.75942 1.05028 1.01698 1.86541 1.24097 1.33012 1.85514 1.21366 0.89716 0.80698 0.72980 1.90680 1.67610 1.36443 1.49856 1.20108 0.87692 0.94956 1.26552 1.20984 0.93872 0.96215 0.93563 1.20634 0.93625 0.96684 1.14924 1.18787 0.91351 0.93695 0.97924 1.18852 0.91877 0.93595 1.00979 1.21738 0.95319 0.97587 0.95020 1.21149 0.92459 0.98854 1.00472 1.20199 0.97433 0.90722 0.95430 1.20960 0.88650 1.03877 1.04054 1.15802 0.91210 0.87234 1.10757 1.25680 0.92397 0.92450 0.92396 1.81240 1.10158 1.11417 1.10725 1.21292 0.91527 0.98776 0.96304 1.21413 0.92786 0.97203 1.06063 1.18734 0.92411 0.90595 0.86345 1.20357 1.05332 0.96343 1.25322 0.89321 1.26813 0.94878 1.03671 0.92589 1.69681 1.19508 1.34735 1.18094 0.85290 0.78769 0.75942 0.80030 1.17991 1.17751 1.19981 0.84871 0.92719 0.93074 0.85539 0.85227 0.85311 0.81855 0.89242 0.92350 0.88320 0.84170 0.85616 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.57 113.37 1.20 2.18 16 2 O -0.37 -14.82 9.84 -57.35 -0.56 -15.39 16 3 C 0.50 24.09 7.87 70.16 0.55 24.65 16 4 O -0.55 -29.20 13.47 19.67 0.26 -28.93 16 5 C -0.29 -14.22 6.07 -18.47 -0.11 -14.34 16 6 C -0.03 -1.18 9.60 22.48 0.22 -0.96 16 7 C -0.24 -9.26 9.37 22.53 0.21 -9.05 16 8 C -0.02 -0.68 5.86 -20.12 -0.12 -0.80 16 9 C -0.05 -1.71 5.87 -20.08 -0.12 -1.83 16 10 C -0.08 -2.22 9.41 22.54 0.21 -2.01 16 11 C -0.11 -2.35 9.67 22.20 0.21 -2.13 16 12 C -0.04 -0.72 5.92 -19.56 -0.12 -0.84 16 13 C -0.12 -1.73 9.60 71.24 0.68 -1.05 16 14 C -0.05 -1.13 5.73 -21.39 -0.12 -1.26 16 15 C 0.28 7.33 13.78 88.33 1.22 8.55 16 16 N -0.46 -13.31 18.54 19.01 0.35 -12.96 16 17 C -0.06 -1.62 9.12 22.77 0.21 -1.42 16 18 C -0.16 -7.23 8.00 22.95 0.18 -7.05 16 19 C 0.12 6.36 5.66 -19.90 -0.11 6.25 16 20 C -0.45 -23.76 7.96 23.42 0.19 -23.58 16 21 H 0.09 5.00 5.75 -2.91 -0.02 4.98 16 22 C 0.04 1.86 5.26 85.37 0.45 2.31 16 23 N -0.80 -37.20 11.10 21.88 0.24 -36.96 16 24 Si 0.98 37.14 29.57 68.60 2.03 39.17 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.13 4.64 7.62 -2.91 -0.02 4.62 16 32 H 0.13 4.11 6.09 -2.91 -0.02 4.09 16 33 H 0.13 3.94 6.14 -2.91 -0.02 3.93 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 0.95 7.09 -2.39 -0.02 0.93 16 37 H 0.10 1.02 8.08 -2.39 -0.02 1.00 16 38 H 0.14 3.62 6.13 -2.91 -0.02 3.60 16 39 H 0.13 5.75 4.61 -2.91 -0.01 5.74 16 40 H 0.30 12.35 8.29 -92.71 -0.77 11.58 16 Total: -1.00 -62.88 349.54 8.27 -54.62 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 1.11 Total: 22.80 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.83 Total: -22.35 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.60 Total: -49.91 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.30 Total: -44.32 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -62.88 8.27 -54.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244494547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.364 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds